Protein–RNA interactions for Protein: A6NKD9

CCDC85C, Coiled-coil domain-containing protein 85C, humanhuman

Predictions only

Length 419 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC85CA6NKD9 GABRD-205ENST00000638771 1707 ntAPPRIS ALT2 TSL 3 BASIC20.79■□□□□ 0.92
CCDC85CA6NKD9 CNR1-203ENST00000369501 6031 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
CCDC85CA6NKD9 AL356309.3-201ENST00000624132 1934 ntBASIC20.79■□□□□ 0.92
CCDC85CA6NKD9 PABPC1L-204ENST00000255136 2129 ntAPPRIS P1 TSL 5 BASIC20.79■□□□□ 0.92
CCDC85CA6NKD9 NUDT4P1-201ENST00000322209 1206 ntAPPRIS P1 BASIC20.79■□□□□ 0.92
CCDC85CA6NKD9 VCX3A-201ENST00000381089 995 ntAPPRIS P2 TSL 1 (best) BASIC20.79■□□□□ 0.92
CCDC85CA6NKD9 AC092159.3-201ENST00000439196 571 ntTSL 4 BASIC20.79■□□□□ 0.92
CCDC85CA6NKD9 CCND1-203ENST00000536559 553 ntTSL 3 BASIC20.79■□□□□ 0.92
CCDC85CA6NKD9 RIMS4-202ENST00000541604 1036 ntAPPRIS ALT1 TSL 1 (best) BASIC20.79■□□□□ 0.92
CCDC85CA6NKD9 DUT-210ENST00000559935 569 ntTSL 3 BASIC20.79■□□□□ 0.92
CCDC85CA6NKD9 AL513190.1-201ENST00000621254 727 ntBASIC20.79■□□□□ 0.92
CCDC85CA6NKD9 AC105339.1-201ENST00000440089 1362 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
CCDC85CA6NKD9 WDR18-204ENST00000587001 1465 ntTSL 5 BASIC20.79■□□□□ 0.92
CCDC85CA6NKD9 FAM72C-201ENST00000369175 1658 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
CCDC85CA6NKD9 FGF16-201ENST00000439435 1650 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
CCDC85CA6NKD9 TPST2-203ENST00000403880 2084 ntAPPRIS P1 TSL 5 BASIC20.79■□□□□ 0.92
CCDC85CA6NKD9 C10orf55-202ENST00000412307 2360 ntAPPRIS P1 TSL 5 BASIC20.79■□□□□ 0.92
CCDC85CA6NKD9 DHRS7-212ENST00000611054 1321 ntTSL 5 BASIC20.78■□□□□ 0.92
CCDC85CA6NKD9 AL365232.1-201ENST00000423730 1636 ntAPPRIS P1 TSL 5 BASIC20.78■□□□□ 0.92
CCDC85CA6NKD9 GTF3C5-201ENST00000342018 1905 ntTSL 5 BASIC20.78■□□□□ 0.92
CCDC85CA6NKD9 FBXL14-201ENST00000339235 2111 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
CCDC85CA6NKD9 ADAD2-201ENST00000268624 2283 ntAPPRIS P3 TSL 2 BASIC20.78■□□□□ 0.92
CCDC85CA6NKD9 AC096719.1-201ENST00000510705 1874 ntTSL 5 BASIC20.78■□□□□ 0.92
CCDC85CA6NKD9 SQLE-206ENST00000523430 1879 ntTSL 2 BASIC20.78■□□□□ 0.92
CCDC85CA6NKD9 TSSC4-201ENST00000333256 1686 ntAPPRIS P3 TSL 1 (best) BASIC20.78■□□□□ 0.92
CCDC85CA6NKD9 STK16-201ENST00000396738 1673 ntAPPRIS P1 TSL 2 BASIC20.78■□□□□ 0.92
CCDC85CA6NKD9 TRABD2A-202ENST00000409133 1554 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
CCDC85CA6NKD9 CHRNB4-202ENST00000412074 1355 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
CCDC85CA6NKD9 TM2D3-207ENST00000559107 1353 ntTSL 3 BASIC20.78■□□□□ 0.92
CCDC85CA6NKD9 AC002310.6-201ENST00000624451 1377 ntBASIC20.78■□□□□ 0.92
CCDC85CA6NKD9 JAKMIP1-208ENST00000637373 1362 ntTSL 5 BASIC20.78■□□□□ 0.92
CCDC85CA6NKD9 AL807752.4-201ENST00000439076 580 ntTSL 2 BASIC20.78■□□□□ 0.92
CCDC85CA6NKD9 CCND3-213ENST00000510503 1257 ntTSL 3 BASIC20.78■□□□□ 0.92
CCDC85CA6NKD9 MRPL49-203ENST00000526171 501 ntTSL 2 BASIC20.78■□□□□ 0.92
CCDC85CA6NKD9 RPS29-206ENST00000557111 488 ntTSL 2 BASIC20.78■□□□□ 0.92
CCDC85CA6NKD9 AC087641.1-201ENST00000557561 1021 ntBASIC20.78■□□□□ 0.92
CCDC85CA6NKD9 AC026336.2-201ENST00000563922 763 ntTSL 2 BASIC20.78■□□□□ 0.92
CCDC85CA6NKD9 WNT1-202ENST00000613114 1278 ntTSL 5 BASIC20.78■□□□□ 0.92
CCDC85CA6NKD9 ADORA1-208ENST00000618295 862 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
CCDC85CA6NKD9 DEAF1-201ENST00000382409 2500 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
CCDC85CA6NKD9 OGG1-205ENST00000344629 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC20.78■□□□□ 0.92
CCDC85CA6NKD9 ACBD5-201ENST00000375888 1747 ntAPPRIS ALT2 TSL 5 BASIC20.78■□□□□ 0.92
CCDC85CA6NKD9 GPX3-209ENST00000614343 1478 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
CCDC85CA6NKD9 SLC7A10-201ENST00000253188 1946 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
CCDC85CA6NKD9 SYTL1-201ENST00000318074 1900 ntTSL 2 BASIC20.77■□□□□ 0.92
CCDC85CA6NKD9 RPS6KB1-204ENST00000443572 1913 ntTSL 2 BASIC20.77■□□□□ 0.92
CCDC85CA6NKD9 FAM237A-203ENST00000543490 1376 ntAPPRIS P1 TSL 5 BASIC20.77■□□□□ 0.92
CCDC85CA6NKD9 LCE1E-201ENST00000368770 1180 ntAPPRIS P2 TSL 1 (best) BASIC20.77■□□□□ 0.92
CCDC85CA6NKD9 CLDN7-202ENST00000397317 1228 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
CCDC85CA6NKD9 DMKN-206ENST00000418261 1257 ntAPPRIS ALT2 TSL 1 (best) BASIC20.77■□□□□ 0.92
CCDC85CA6NKD9 AC064807.1-203ENST00000520357 575 ntTSL 5 BASIC20.77■□□□□ 0.92
CCDC85CA6NKD9 AJ011932.1-201ENST00000621707 465 ntBASIC20.77■□□□□ 0.92
CCDC85CA6NKD9 SNX7-201ENST00000306121 1734 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
CCDC85CA6NKD9 BMS1P4-202ENST00000584747 1716 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
CCDC85CA6NKD9 SLC35G2-202ENST00000446465 2060 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
CCDC85CA6NKD9 BAIAP2-203ENST00000416299 1442 ntTSL 2 BASIC20.77■□□□□ 0.91
CCDC85CA6NKD9 CRHR1-203ENST00000339069 2490 ntTSL 2 BASIC20.77■□□□□ 0.91
CCDC85CA6NKD9 KMT5B-201ENST00000304363 5837 ntAPPRIS P1 TSL 5 BASIC20.77■□□□□ 0.91
CCDC85CA6NKD9 FOXK2-201ENST00000335255 5265 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.91
CCDC85CA6NKD9 KLC1-201ENST00000246489 2294 ntAPPRIS P1 TSL 5 BASIC20.76■□□□□ 0.91
CCDC85CA6NKD9 ATG4D-201ENST00000309469 1949 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
CCDC85CA6NKD9 KLC1-224ENST00000557450 2265 ntTSL 5 BASIC20.76■□□□□ 0.91
CCDC85CA6NKD9 DAZAP1-201ENST00000233078 2160 ntAPPRIS P2 TSL 1 (best) BASIC20.76■□□□□ 0.91
CCDC85CA6NKD9 NDRG2-215ENST00000553503 2162 ntAPPRIS ALT1 TSL 1 (best) BASIC20.76■□□□□ 0.91
CCDC85CA6NKD9 PIGQ-206ENST00000422307 2052 ntTSL 3 BASIC20.76■□□□□ 0.91
CCDC85CA6NKD9 CDC14B-208ENST00000463569 1734 ntAPPRIS ALT2 TSL 5 BASIC20.76■□□□□ 0.91
CCDC85CA6NKD9 PDHA1-203ENST00000379805 734 ntTSL 2 BASIC20.76■□□□□ 0.91
CCDC85CA6NKD9 HLA-DRB6-201ENST00000411500 1235 ntBASIC20.76■□□□□ 0.91
CCDC85CA6NKD9 PTPA-213ENST00000419582 952 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
CCDC85CA6NKD9 RPL13P5-203ENST00000421824 845 ntTSL 3 BASIC20.76■□□□□ 0.91
CCDC85CA6NKD9 PIGBOS1-201ENST00000436697 866 ntAPPRIS P2 TSL 2 BASIC20.76■□□□□ 0.91
CCDC85CA6NKD9 DICER1-AS1-202ENST00000439819 810 ntTSL 3 BASIC20.76■□□□□ 0.91
CCDC85CA6NKD9 BARX1-AS1-202ENST00000454594 307 ntTSL 3 BASIC20.76■□□□□ 0.91
CCDC85CA6NKD9 POLD4-211ENST00000539074 714 ntTSL 3 BASIC20.76■□□□□ 0.91
CCDC85CA6NKD9 COX14-202ENST00000548985 677 ntAPPRIS P1 TSL 2 BASIC20.76■□□□□ 0.91
CCDC85CA6NKD9 GNG2-209ENST00000555472 908 ntAPPRIS P1 TSL 3 BASIC20.76■□□□□ 0.91
CCDC85CA6NKD9 LSM12-202ENST00000585388 942 ntTSL 3 BASIC20.76■□□□□ 0.91
CCDC85CA6NKD9 GRTP1-205ENST00000620217 1073 ntTSL 2 BASIC20.76■□□□□ 0.91
CCDC85CA6NKD9 AC092865.6-201ENST00000642101 219 ntBASIC20.76■□□□□ 0.91
CCDC85CA6NKD9 EGR4-201ENST00000436467 2377 ntAPPRIS ALT2 TSL 1 (best) BASIC20.76■□□□□ 0.91
CCDC85CA6NKD9 SPSB1-202ENST00000357898 1439 ntAPPRIS P1 TSL 5 BASIC20.76■□□□□ 0.91
CCDC85CA6NKD9 C6orf89-203ENST00000373685 1400 ntAPPRIS ALT2 TSL 5 BASIC20.76■□□□□ 0.91
CCDC85CA6NKD9 SMYD2-201ENST00000366957 1671 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
CCDC85CA6NKD9 HEIH-201ENST00000623091 1652 ntBASIC20.76■□□□□ 0.91
CCDC85CA6NKD9 NBL1-202ENST00000375136 2172 ntAPPRIS P3 TSL 1 (best) BASIC20.76■□□□□ 0.91
CCDC85CA6NKD9 CPE-201ENST00000402744 2421 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
CCDC85CA6NKD9 SLC35A3-222ENST00000640715 1989 ntTSL 5 BASIC20.76■□□□□ 0.91
CCDC85CA6NKD9 SOCS2-206ENST00000549122 2391 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
CCDC85CA6NKD9 SLC36A1-209ENST00000521925 1621 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
CCDC85CA6NKD9 C1orf229-201ENST00000623686 2258 ntBASIC20.75■□□□□ 0.91
CCDC85CA6NKD9 ZFPL1-201ENST00000294258 1371 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
CCDC85CA6NKD9 LYSMD2-201ENST00000267838 1759 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
CCDC85CA6NKD9 SLC10A3-201ENST00000263512 2161 ntAPPRIS P3 TSL 2 BASIC20.75■□□□□ 0.91
CCDC85CA6NKD9 CCM2-206ENST00000474617 1532 ntTSL 5 BASIC20.75■□□□□ 0.91
CCDC85CA6NKD9 HNRNPLL-204ENST00000409328 1908 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
CCDC85CA6NKD9 CLTA-201ENST00000242285 1152 ntAPPRIS P4 TSL 1 (best) BASIC20.75■□□□□ 0.91
CCDC85CA6NKD9 ROPN1L-201ENST00000274134 1066 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
CCDC85CA6NKD9 CLTA-203ENST00000396603 1090 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
CCDC85CA6NKD9 KIRREL3-AS3-201ENST00000404882 831 ntBASIC20.75■□□□□ 0.91
CCDC85CA6NKD9 PMS2P4-201ENST00000412466 1052 ntBASIC20.75■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 23.6 ms