Protein–RNA interactions for Protein: Q9UK41

VPS28, Vacuolar protein sorting-associated protein 28 homolog, humanhuman

Predictions only

Length 221 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28Q9UK41 NFIB-208ENST00000397581 3318 ntTSL 5 BASIC19.35■□□□□ 0.69
VPS28Q9UK41 VWA8-AS1-201ENST00000611103 2079 ntTSL 2 BASIC19.35■□□□□ 0.69
VPS28Q9UK41 SAYSD1-201ENST00000229903 2020 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
VPS28Q9UK41 GPR146-201ENST00000397095 1969 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
VPS28Q9UK41 LGALS8-AS1-201ENST00000487567 1457 ntBASIC19.35■□□□□ 0.69
VPS28Q9UK41 LINC01586-201ENST00000506090 1840 ntTSL 2 BASIC19.35■□□□□ 0.69
VPS28Q9UK41 ANXA8L1-201ENST00000584982 2174 ntTSL 2 BASIC19.34■□□□□ 0.69
VPS28Q9UK41 SMARCC1-201ENST00000254480 6375 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
VPS28Q9UK41 CTBP2-202ENST00000334808 2130 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
VPS28Q9UK41 FGFR2-204ENST00000356226 3547 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
VPS28Q9UK41 PRMT5-204ENST00000397441 2418 ntTSL 2 BASIC19.34■□□□□ 0.69
VPS28Q9UK41 LDHD-201ENST00000300051 2067 ntAPPRIS P3 TSL 1 (best) BASIC19.34■□□□□ 0.69
VPS28Q9UK41 CDC14B-208ENST00000463569 1734 ntAPPRIS ALT2 TSL 5 BASIC19.34■□□□□ 0.69
VPS28Q9UK41 BRPF3-202ENST00000357641 6052 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
VPS28Q9UK41 CDHR5-201ENST00000349570 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC19.34■□□□□ 0.69
VPS28Q9UK41 SIX5-203ENST00000560168 1975 ntTSL 4 BASIC19.34■□□□□ 0.69
VPS28Q9UK41 FP475955.4-201ENST00000623131 1990 ntBASIC19.34■□□□□ 0.69
VPS28Q9UK41 METTL5-201ENST00000260953 1010 ntAPPRIS P2 TSL 1 (best) BASIC19.34■□□□□ 0.69
VPS28Q9UK41 BOLA3-202ENST00000327428 639 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
VPS28Q9UK41 C5orf49-202ENST00000509627 1020 ntAPPRIS ALT2 TSL 1 (best) BASIC19.34■□□□□ 0.69
VPS28Q9UK41 NDUFS3-213ENST00000534716 1263 ntTSL 2 BASIC19.34■□□□□ 0.69
VPS28Q9UK41 CFL2-205ENST00000555765 632 ntTSL 2 BASIC19.34■□□□□ 0.69
VPS28Q9UK41 AL512604.3-201ENST00000569583 964 ntBASIC19.34■□□□□ 0.69
VPS28Q9UK41 AC215522.2-202ENST00000633163 1143 ntTSL 5 BASIC19.34■□□□□ 0.69
VPS28Q9UK41 WT1-205ENST00000452863 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC19.34■□□□□ 0.69
VPS28Q9UK41 TNFRSF1A-213ENST00000540022 1527 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
VPS28Q9UK41 MED15P9-202ENST00000427638 1841 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
VPS28Q9UK41 GGT6-202ENST00000381550 2145 ntTSL 2 BASIC19.34■□□□□ 0.69
VPS28Q9UK41 OTOP3-201ENST00000328801 2363 ntAPPRIS P1 TSL 2 BASIC19.34■□□□□ 0.69
VPS28Q9UK41 SMARCD1-201ENST00000381513 3237 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
VPS28Q9UK41 IQCJ-SCHIP1-207ENST00000638749 2633 ntAPPRIS P3 TSL 1 (best) BASIC19.34■□□□□ 0.69
VPS28Q9UK41 SLC39A1-209ENST00000537590 2022 ntTSL 2 BASIC19.34■□□□□ 0.69
VPS28Q9UK41 CHRNB1-201ENST00000306071 2557 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
VPS28Q9UK41 COLCA2-201ENST00000398035 1414 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
VPS28Q9UK41 GXYLT1-202ENST00000398675 7497 ntAPPRIS P4 TSL 1 (best) BASIC19.33■□□□□ 0.69
VPS28Q9UK41 COL9A3-201ENST00000343916 2485 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
VPS28Q9UK41 ORAI2-204ENST00000473939 2493 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
VPS28Q9UK41 FO681492.1-203ENST00000622861 1362 ntAPPRIS ALT2 TSL 5 BASIC19.33■□□□□ 0.69
VPS28Q9UK41 KLHL14-201ENST00000358095 1884 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
VPS28Q9UK41 SLC6A18-201ENST00000324642 2121 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
VPS28Q9UK41 SEPT6-202ENST00000354228 1576 ntAPPRIS P4 TSL 1 (best) BASIC19.33■□□□□ 0.69
VPS28Q9UK41 PPP1R7-207ENST00000407025 1592 ntAPPRIS P1 TSL 5 BASIC19.33■□□□□ 0.69
VPS28Q9UK41 SNX19-209ENST00000530356 1562 ntTSL 2 BASIC19.33■□□□□ 0.69
VPS28Q9UK41 MTFR1L-202ENST00000374301 2099 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
VPS28Q9UK41 SELENOF-202ENST00000370554 1220 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
VPS28Q9UK41 AC105935.2-201ENST00000435478 544 ntTSL 4 BASIC19.33■□□□□ 0.68
VPS28Q9UK41 L34079.3-201ENST00000600242 546 ntTSL 4 BASIC19.33■□□□□ 0.68
VPS28Q9UK41 AC008622.2-201ENST00000617006 1229 ntBASIC19.33■□□□□ 0.68
VPS28Q9UK41 AC009542.2-201ENST00000637483 1189 ntTSL 5 BASIC19.33■□□□□ 0.68
VPS28Q9UK41 AP001922.1-201ENST00000499390 1504 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
VPS28Q9UK41 SNHG10-201ENST00000500370 1531 ntTSL 2 BASIC19.33■□□□□ 0.68
VPS28Q9UK41 ZNRF3-203ENST00000544604 6851 ntAPPRIS ALT2 TSL 1 (best) BASIC19.33■□□□□ 0.68
VPS28Q9UK41 ADAP2-201ENST00000330889 2934 ntAPPRIS P2 TSL 1 (best) BASIC19.33■□□□□ 0.68
VPS28Q9UK41 P2RY6-212ENST00000618468 2431 ntAPPRIS P1 TSL 3 BASIC19.33■□□□□ 0.68
VPS28Q9UK41 SLC25A51-202ENST00000377716 1691 ntAPPRIS P1 TSL 3 BASIC19.33■□□□□ 0.68
VPS28Q9UK41 KRT8P3-201ENST00000519669 1449 ntBASIC19.33■□□□□ 0.68
VPS28Q9UK41 ADORA2A-201ENST00000337539 2569 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
VPS28Q9UK41 LINC00315-201ENST00000441947 2323 ntTSL 5 BASIC19.33■□□□□ 0.68
VPS28Q9UK41 CORO1A-216ENST00000570045 1622 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
VPS28Q9UK41 GLS-202ENST00000338435 4475 ntAPPRIS ALT1 TSL 1 (best) BASIC19.32■□□□□ 0.68
VPS28Q9UK41 KAT5-203ENST00000377046 2237 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
VPS28Q9UK41 THOC3-208ENST00000513482 1796 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
VPS28Q9UK41 CAB39-203ENST00000410084 1324 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
VPS28Q9UK41 ARFIP2-204ENST00000445086 1300 ntTSL 2 BASIC19.32■□□□□ 0.68
VPS28Q9UK41 PRSS36-202ENST00000418068 2446 ntTSL 2 BASIC19.32■□□□□ 0.68
VPS28Q9UK41 CCK-201ENST00000334681 830 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
VPS28Q9UK41 NPM3-201ENST00000370110 877 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
VPS28Q9UK41 MIR1302-2HG-202ENST00000473358 712 ntTSL 5 BASIC19.32■□□□□ 0.68
VPS28Q9UK41 LY6E-214ENST00000522971 857 ntAPPRIS P2 TSL 2 BASIC19.32■□□□□ 0.68
VPS28Q9UK41 SLC52A2-205ENST00000526752 710 ntTSL 3 BASIC19.32■□□□□ 0.68
VPS28Q9UK41 AC140725.1-202ENST00000561145 712 ntTSL 5 BASIC19.32■□□□□ 0.68
VPS28Q9UK41 AC005606.2-201ENST00000564438 614 ntTSL 2 BASIC19.32■□□□□ 0.68
VPS28Q9UK41 TXNL4A-211ENST00000592837 611 ntTSL 2 BASIC19.32■□□□□ 0.68
VPS28Q9UK41 AL158151.3-201ENST00000599172 696 ntTSL 5 BASIC19.32■□□□□ 0.68
VPS28Q9UK41 CLIP2-202ENST00000361545 5445 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
VPS28Q9UK41 SEPT2-203ENST00000391971 3315 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
VPS28Q9UK41 IKBKG-214ENST00000618670 2069 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
VPS28Q9UK41 THAP7-AS1-203ENST00000452284 2298 ntTSL 2 BASIC19.32■□□□□ 0.68
VPS28Q9UK41 ABHD14B-202ENST00000361143 1636 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
VPS28Q9UK41 FUCA1-201ENST00000374479 2047 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
VPS28Q9UK41 HOXD10-201ENST00000249501 1989 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
VPS28Q9UK41 NR1H2-201ENST00000253727 1998 ntAPPRIS P2 TSL 1 (best) BASIC19.32■□□□□ 0.68
VPS28Q9UK41 CFAP100-203ENST00000505024 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC19.32■□□□□ 0.68
VPS28Q9UK41 KDM5C-203ENST00000375383 5122 ntAPPRIS ALT2 TSL 5 BASIC19.32■□□□□ 0.68
VPS28Q9UK41 KCTD12-201ENST00000377474 6225 ntAPPRIS P1 BASIC19.31■□□□□ 0.68
VPS28Q9UK41 AC120498.9-201ENST00000339021 3867 ntBASIC19.31■□□□□ 0.68
VPS28Q9UK41 GJB6-204ENST00000400066 1927 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
VPS28Q9UK41 PRRT1-202ENST00000375150 1726 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
VPS28Q9UK41 DMRT2-204ENST00000382251 2292 ntAPPRIS P1 TSL 5 BASIC19.31■□□□□ 0.68
VPS28Q9UK41 RTBDN-201ENST00000322912 1328 ntAPPRIS P3 TSL 1 (best) BASIC19.31■□□□□ 0.68
VPS28Q9UK41 LAPTM4B-204ENST00000619747 2758 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
VPS28Q9UK41 KRT13-208ENST00000587544 1456 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
VPS28Q9UK41 P2RX5-202ENST00000345901 2031 ntTSL 5 BASIC19.31■□□□□ 0.68
VPS28Q9UK41 EFHC1-206ENST00000635760 2030 ntTSL 5 BASIC19.31■□□□□ 0.68
VPS28Q9UK41 TCP11-209ENST00000444780 1841 ntAPPRIS ALT2 TSL 2 BASIC19.31■□□□□ 0.68
VPS28Q9UK41 COMMD1-201ENST00000311832 911 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
VPS28Q9UK41 SPAG16-207ENST00000432529 1250 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
VPS28Q9UK41 TMEM64-204ENST00000519519 873 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
VPS28Q9UK41 ABHD14B-208ENST00000525795 980 ntAPPRIS P1 TSL 3 BASIC19.31■□□□□ 0.68
VPS28Q9UK41 MIR4674-201ENST00000582457 87 ntBASIC19.31■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 37.4 ms