Protein–RNA interactions for Protein: Q9NXB0

MKS1, Meckel syndrome type 1 protein, humanhuman

Predictions only

Length 559 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MKS1Q9NXB0 ZNRF2-201ENST00000323037 3460 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
MKS1Q9NXB0 NBPF21P-201ENST00000425093 1451 ntBASIC18.6■□□□□ 0.57
MKS1Q9NXB0 PRSS35-201ENST00000369700 2440 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
MKS1Q9NXB0 C19orf25-201ENST00000427685 1410 ntTSL 2 BASIC18.6■□□□□ 0.57
MKS1Q9NXB0 IL17RC-206ENST00000416074 2342 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
MKS1Q9NXB0 SLC38A8-201ENST00000299709 1308 ntAPPRIS P1 TSL 5 BASIC18.6■□□□□ 0.57
MKS1Q9NXB0 HSD11B1L-221ENST00000583928 1319 ntTSL 5 BASIC18.6■□□□□ 0.57
MKS1Q9NXB0 CFC1-201ENST00000259216 1046 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
MKS1Q9NXB0 CFC1B-201ENST00000281882 1071 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
MKS1Q9NXB0 XXYLT1-202ENST00000356740 564 ntTSL 2 BASIC18.6■□□□□ 0.57
MKS1Q9NXB0 GPSM1-203ENST00000392944 1111 ntTSL 3 BASIC18.6■□□□□ 0.57
MKS1Q9NXB0 GPR75-201ENST00000394705 2115 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
MKS1Q9NXB0 NCF1B-203ENST00000435988 1254 ntBASIC18.6■□□□□ 0.57
MKS1Q9NXB0 AC008667.2-201ENST00000504413 469 ntTSL 3 BASIC18.6■□□□□ 0.57
MKS1Q9NXB0 SNHG6-203ENST00000520944 638 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
MKS1Q9NXB0 PRKY-204ENST00000533551 1019 ntBASIC18.6■□□□□ 0.57
MKS1Q9NXB0 AC011611.3-201ENST00000552367 569 ntTSL 4 BASIC18.6■□□□□ 0.57
MKS1Q9NXB0 AF274858.3-202ENST00000569906 755 ntTSL 3 BASIC18.6■□□□□ 0.57
MKS1Q9NXB0 ZNF667-AS1-206ENST00000591797 535 ntTSL 5 BASIC18.6■□□□□ 0.57
MKS1Q9NXB0 FFAR3-202ENST00000594310 1182 ntAPPRIS P1 BASIC18.6■□□□□ 0.57
MKS1Q9NXB0 LGI4-201ENST00000310123 2814 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
MKS1Q9NXB0 USP48-204ENST00000400301 4309 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
MKS1Q9NXB0 FAM222A-201ENST00000358906 2731 ntAPPRIS P1 TSL 5 BASIC18.6■□□□□ 0.57
MKS1Q9NXB0 ZNF302-215ENST00000627982 1723 ntAPPRIS ALT2 TSL 5 BASIC18.6■□□□□ 0.57
MKS1Q9NXB0 SLC2A14-214ENST00000542505 1650 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
MKS1Q9NXB0 AC090206.1-201ENST00000615734 1678 ntTSL 5 BASIC18.6■□□□□ 0.57
MKS1Q9NXB0 NFATC1-217ENST00000591814 4819 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
MKS1Q9NXB0 SLC22A4-201ENST00000200652 2201 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
MKS1Q9NXB0 KRT81-202ENST00000615839 1505 ntAPPRIS ALT2 TSL 5 BASIC18.59■□□□□ 0.57
MKS1Q9NXB0 INO80E-207ENST00000563197 2103 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
MKS1Q9NXB0 CCNJL-203ENST00000393977 3320 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
MKS1Q9NXB0 CRYZL1-203ENST00000381540 1482 ntTSL 2 BASIC18.59■□□□□ 0.57
MKS1Q9NXB0 C21orf58-203ENST00000397680 2624 ntAPPRIS ALT2 TSL 2 BASIC18.59■□□□□ 0.57
MKS1Q9NXB0 MATN4-205ENST00000537548 1991 ntAPPRIS ALT2 TSL 5 BASIC18.59■□□□□ 0.57
MKS1Q9NXB0 GPC2-201ENST00000292377 2532 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
MKS1Q9NXB0 RELL2-201ENST00000297164 2520 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
MKS1Q9NXB0 SLCO6A1-201ENST00000379807 2437 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
MKS1Q9NXB0 QTRT1-201ENST00000250237 1317 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
MKS1Q9NXB0 GPS1-201ENST00000306823 1842 ntAPPRIS P3 TSL 1 (best) BASIC18.59■□□□□ 0.57
MKS1Q9NXB0 MBD1-208ENST00000398493 1845 ntTSL 5 BASIC18.59■□□□□ 0.57
MKS1Q9NXB0 LINC00574-201ENST00000420557 2318 ntTSL 2 BASIC18.59■□□□□ 0.57
MKS1Q9NXB0 SPATA2L-202ENST00000335360 1001 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
MKS1Q9NXB0 EGFL7-202ENST00000371698 1282 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
MKS1Q9NXB0 Z98884.1-201ENST00000451646 830 ntTSL 3 BASIC18.59■□□□□ 0.57
MKS1Q9NXB0 DLX3-202ENST00000512495 834 ntTSL 2 BASIC18.59■□□□□ 0.57
MKS1Q9NXB0 CA3-AS1-201ENST00000517697 559 ntTSL 4 BASIC18.59■□□□□ 0.57
MKS1Q9NXB0 Z97986.1-201ENST00000565879 476 ntTSL 5 BASIC18.59■□□□□ 0.57
MKS1Q9NXB0 TXNL4A-203ENST00000585474 1185 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
MKS1Q9NXB0 PNMA8A-203ENST00000602246 572 ntAPPRIS ALT2 TSL 4 BASIC18.59■□□□□ 0.57
MKS1Q9NXB0 NECTIN1-201ENST00000264025 5840 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
MKS1Q9NXB0 FAM110A-203ENST00000381939 1737 ntAPPRIS P1 TSL 3 BASIC18.59■□□□□ 0.57
MKS1Q9NXB0 ZNF655-202ENST00000320583 1601 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
MKS1Q9NXB0 FAM131A-202ENST00000340957 2421 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
MKS1Q9NXB0 RNFT2-204ENST00000407967 2415 ntTSL 5 BASIC18.59■□□□□ 0.57
MKS1Q9NXB0 HEXIM2-201ENST00000307275 1528 ntAPPRIS P1 TSL 2 BASIC18.59■□□□□ 0.57
MKS1Q9NXB0 TRMT6-201ENST00000203001 2327 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
MKS1Q9NXB0 LINC02361-201ENST00000538731 1484 ntTSL 2 BASIC18.58■□□□□ 0.57
MKS1Q9NXB0 NPBWR1-201ENST00000331251 2687 ntAPPRIS P1 BASIC18.58■□□□□ 0.57
MKS1Q9NXB0 SRCIN1-213ENST00000617146 7058 ntAPPRIS P2 TSL 1 (best) BASIC18.58■□□□□ 0.57
MKS1Q9NXB0 GRB10-201ENST00000335866 5032 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
MKS1Q9NXB0 FAM83H-201ENST00000388913 5654 ntAPPRIS P1 TSL 5 BASIC18.58■□□□□ 0.57
MKS1Q9NXB0 BOD1L2-201ENST00000585477 3239 ntAPPRIS P1 BASIC18.58■□□□□ 0.57
MKS1Q9NXB0 SCFD2-204ENST00000611795 1320 ntTSL 5 BASIC18.58■□□□□ 0.57
MKS1Q9NXB0 SLC35E1-208ENST00000595753 5099 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
MKS1Q9NXB0 POM121L13P-201ENST00000422362 380 ntBASIC18.58■□□□□ 0.56
MKS1Q9NXB0 UNC93B4-201ENST00000505679 747 ntBASIC18.58■□□□□ 0.56
MKS1Q9NXB0 DHRS4-206ENST00000558581 1143 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
MKS1Q9NXB0 MAGIX-202ENST00000595224 1238 ntAPPRIS P2 TSL 5 BASIC18.58■□□□□ 0.56
MKS1Q9NXB0 AC018730.2-201ENST00000598623 443 ntTSL 5 BASIC18.58■□□□□ 0.56
MKS1Q9NXB0 AL137784.2-201ENST00000607332 1000 ntBASIC18.58■□□□□ 0.56
MKS1Q9NXB0 CORO6-210ENST00000580212 2345 ntTSL 5 BASIC18.58■□□□□ 0.56
MKS1Q9NXB0 CDHR1-201ENST00000332904 2694 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
MKS1Q9NXB0 ACAA1-209ENST00000450296 1570 ntTSL 5 BASIC18.58■□□□□ 0.56
MKS1Q9NXB0 PSMD8-207ENST00000592035 1581 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
MKS1Q9NXB0 GNE-201ENST00000377902 2565 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
MKS1Q9NXB0 TRIM15-207ENST00000376694 2214 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
MKS1Q9NXB0 FLYWCH1P1-201ENST00000460917 1874 ntBASIC18.58■□□□□ 0.56
MKS1Q9NXB0 PNMA6E-201ENST00000445091 2192 ntAPPRIS P1 TSL 2 BASIC18.58■□□□□ 0.56
MKS1Q9NXB0 UBP1-202ENST00000283629 4148 ntAPPRIS P3 TSL 1 (best) BASIC18.58■□□□□ 0.56
MKS1Q9NXB0 LMNA-207ENST00000368301 2461 ntTSL 2 BASIC18.58■□□□□ 0.56
MKS1Q9NXB0 KRT8P11-201ENST00000409686 1436 ntBASIC18.57■□□□□ 0.56
MKS1Q9NXB0 AC008556.1-201ENST00000610908 2040 ntBASIC18.57■□□□□ 0.56
MKS1Q9NXB0 ARFIP2-201ENST00000254584 2543 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
MKS1Q9NXB0 TTLL8-201ENST00000266182 2505 ntAPPRIS ALT2 TSL 5 BASIC18.57■□□□□ 0.56
MKS1Q9NXB0 NDN-201ENST00000331837 1931 ntAPPRIS P1 BASIC18.57■□□□□ 0.56
MKS1Q9NXB0 ALDH3A1-206ENST00000457500 1925 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
MKS1Q9NXB0 CIRBP-202ENST00000413636 1606 ntTSL 2 BASIC18.57■□□□□ 0.56
MKS1Q9NXB0 IRAK3-202ENST00000457197 1853 ntTSL 2 BASIC18.57■□□□□ 0.56
MKS1Q9NXB0 CARMIL2-201ENST00000334583 4687 ntAPPRIS P3 TSL 1 (best) BASIC18.57■□□□□ 0.56
MKS1Q9NXB0 ANG-201ENST00000336811 1222 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
MKS1Q9NXB0 ACTN4-202ENST00000390009 2102 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
MKS1Q9NXB0 ROPN1L-202ENST00000503804 1291 ntAPPRIS P1 TSL 2 BASIC18.57■□□□□ 0.56
MKS1Q9NXB0 PPP1R14BP3-201ENST00000509033 445 ntBASIC18.57■□□□□ 0.56
MKS1Q9NXB0 PRSS44-201ENST00000515154 1146 ntBASIC18.57■□□□□ 0.56
MKS1Q9NXB0 AC098934.4-201ENST00000564127 592 ntBASIC18.57■□□□□ 0.56
MKS1Q9NXB0 AC003102.1-201ENST00000588279 569 ntTSL 4 BASIC18.57■□□□□ 0.56
MKS1Q9NXB0 AC004264.1-201ENST00000608354 794 ntBASIC18.57■□□□□ 0.56
MKS1Q9NXB0 PFKL-212ENST00000628044 129 ntTSL 3 BASIC18.57■□□□□ 0.56
MKS1Q9NXB0 AC138028.4-201ENST00000564984 1845 ntBASIC18.57■□□□□ 0.56
MKS1Q9NXB0 AL357033.4-201ENST00000617703 1807 ntBASIC18.57■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 23.4 ms