Protein–RNA interactions for Protein: Q9HD45

TM9SF3, Transmembrane 9 superfamily member 3, humanhuman

Predictions only

Length 589 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TM9SF3Q9HD45 FIS1-207ENST00000474120 915 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
TM9SF3Q9HD45 AC022424.1-201ENST00000512155 889 ntTSL 3 BASIC18.81■□□□□ 0.6
TM9SF3Q9HD45 AC004448.5-201ENST00000579897 567 ntTSL 5 BASIC18.81■□□□□ 0.6
TM9SF3Q9HD45 Metazoa_SRP.33-201ENST00000613468 285 ntBASIC18.81■□□□□ 0.6
TM9SF3Q9HD45 RIMBP3-201ENST00000619918 6105 ntAPPRIS P1 BASIC18.81■□□□□ 0.6
TM9SF3Q9HD45 AC126773.2-201ENST00000562172 1682 ntTSL 3 BASIC18.81■□□□□ 0.6
TM9SF3Q9HD45 GALNT13-201ENST00000392825 5536 ntAPPRIS P1 TSL 2 BASIC18.81■□□□□ 0.6
TM9SF3Q9HD45 CASKIN2-205ENST00000581870 1612 ntTSL 2 BASIC18.81■□□□□ 0.6
TM9SF3Q9HD45 SLC6A7-203ENST00000524041 2431 ntTSL 5 BASIC18.81■□□□□ 0.6
TM9SF3Q9HD45 ISLR2-208ENST00000565159 2824 ntAPPRIS P1 TSL 3 BASIC18.81■□□□□ 0.6
TM9SF3Q9HD45 IL17RC-203ENST00000403601 2388 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
TM9SF3Q9HD45 AC008691.1-203ENST00000515337 1580 ntTSL 2 BASIC18.81■□□□□ 0.6
TM9SF3Q9HD45 TAX1BP3-201ENST00000225525 1377 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
TM9SF3Q9HD45 MEN1-202ENST00000315422 3148 ntAPPRIS ALT1 TSL 5 BASIC18.8■□□□□ 0.6
TM9SF3Q9HD45 ITPKB-202ENST00000366784 3146 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
TM9SF3Q9HD45 TRMU-201ENST00000290846 1940 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
TM9SF3Q9HD45 FAM57B-204ENST00000564806 1710 ntTSL 2 BASIC18.8■□□□□ 0.6
TM9SF3Q9HD45 SMARCD1-201ENST00000381513 3237 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
TM9SF3Q9HD45 SCFD2-204ENST00000611795 1320 ntTSL 5 BASIC18.8■□□□□ 0.6
TM9SF3Q9HD45 FGFR2-204ENST00000356226 3547 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
TM9SF3Q9HD45 WNT7B-204ENST00000410089 2202 ntTSL 5 BASIC18.8■□□□□ 0.6
TM9SF3Q9HD45 RETREG2-203ENST00000430297 4618 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
TM9SF3Q9HD45 AGAP5-203ENST00000581191 2779 ntAPPRIS ALT2 TSL 5 BASIC18.8■□□□□ 0.6
TM9SF3Q9HD45 UBE2Z-201ENST00000360943 3122 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
TM9SF3Q9HD45 RHOBTB2-201ENST00000251822 5451 ntAPPRIS P3 TSL 1 (best) BASIC18.8■□□□□ 0.6
TM9SF3Q9HD45 IRF7-202ENST00000348655 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
TM9SF3Q9HD45 HSD17B10-201ENST00000168216 960 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
TM9SF3Q9HD45 TLCD1-201ENST00000292090 1017 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
TM9SF3Q9HD45 PTMS-201ENST00000309083 1139 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
TM9SF3Q9HD45 FAM187B-201ENST00000324675 1184 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
TM9SF3Q9HD45 MRPL24-202ENST00000368211 883 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
TM9SF3Q9HD45 SYCE1L-201ENST00000378644 858 ntAPPRIS P2 TSL 5 BASIC18.8■□□□□ 0.6
TM9SF3Q9HD45 BECN2-201ENST00000419583 1296 ntAPPRIS P1 BASIC18.8■□□□□ 0.6
TM9SF3Q9HD45 PLPP5-202ENST00000422581 853 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
TM9SF3Q9HD45 DMKN-208ENST00000424570 1293 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
TM9SF3Q9HD45 TSPY23P-201ENST00000440136 739 ntBASIC18.8■□□□□ 0.6
TM9SF3Q9HD45 MIR1302-2HG-202ENST00000473358 712 ntTSL 5 BASIC18.8■□□□□ 0.6
TM9SF3Q9HD45 NEK7-207ENST00000538004 1036 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
TM9SF3Q9HD45 AC140725.1-202ENST00000561145 712 ntTSL 5 BASIC18.8■□□□□ 0.6
TM9SF3Q9HD45 TYROBP-209ENST00000589517 415 ntAPPRIS ALT1 TSL 1 (best) BASIC18.8■□□□□ 0.6
TM9SF3Q9HD45 AC016582.2-201ENST00000591908 446 ntTSL 3 BASIC18.8■□□□□ 0.6
TM9SF3Q9HD45 FGF14-AS2-201ENST00000606448 1074 ntBASIC18.8■□□□□ 0.6
TM9SF3Q9HD45 TBC1D9B-220ENST00000630103 303 ntTSL 5 BASIC18.8■□□□□ 0.6
TM9SF3Q9HD45 SMIM29-209ENST00000636500 1186 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
TM9SF3Q9HD45 FKBP8-206ENST00000596558 1756 ntAPPRIS ALT1 TSL 2 BASIC18.8■□□□□ 0.6
TM9SF3Q9HD45 SKP2-208ENST00000546211 1589 ntTSL 5 BASIC18.8■□□□□ 0.6
TM9SF3Q9HD45 ASGR1-208ENST00000574388 1552 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
TM9SF3Q9HD45 HTR1E-201ENST00000305344 2052 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
TM9SF3Q9HD45 P2RX2-208ENST00000542301 1881 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
TM9SF3Q9HD45 C5orf47-201ENST00000340147 2522 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
TM9SF3Q9HD45 ADGRB1-201ENST00000323289 5527 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
TM9SF3Q9HD45 TRA2A-201ENST00000297071 1845 ntAPPRIS P3 TSL 1 (best) BASIC18.79■□□□□ 0.6
TM9SF3Q9HD45 DMRT2-201ENST00000259622 2459 ntTSL 2 BASIC18.79■□□□□ 0.6
TM9SF3Q9HD45 IL6R-208ENST00000622330 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
TM9SF3Q9HD45 RBM45-201ENST00000286070 1785 ntAPPRIS P2 TSL 1 (best) BASIC18.79■□□□□ 0.6
TM9SF3Q9HD45 FAM91A1-207ENST00000521166 2706 ntTSL 2 BASIC18.79■□□□□ 0.6
TM9SF3Q9HD45 AL450487.1-201ENST00000426799 995 ntBASIC18.79■□□□□ 0.6
TM9SF3Q9HD45 AL359747.1-201ENST00000442370 536 ntTSL 2 BASIC18.79■□□□□ 0.6
TM9SF3Q9HD45 AGBL5-AS1-201ENST00000444217 407 ntTSL 5 BASIC18.79■□□□□ 0.6
TM9SF3Q9HD45 RPL29-202ENST00000466397 742 ntAPPRIS P1 TSL 2 BASIC18.79■□□□□ 0.6
TM9SF3Q9HD45 AC064807.1-201ENST00000518942 816 ntTSL 3 BASIC18.79■□□□□ 0.6
TM9SF3Q9HD45 CLEC4GP1-201ENST00000596555 870 ntBASIC18.79■□□□□ 0.6
TM9SF3Q9HD45 NDUFV2-AS1-203ENST00000608008 779 ntBASIC18.79■□□□□ 0.6
TM9SF3Q9HD45 TXNDC12-205ENST00000610127 806 ntTSL 2 BASIC18.79■□□□□ 0.6
TM9SF3Q9HD45 CLN6-214ENST00000636314 442 ntTSL 3 BASIC18.79■□□□□ 0.6
TM9SF3Q9HD45 SPACA6-213ENST00000637797 1073 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
TM9SF3Q9HD45 ARMC6-202ENST00000392335 2383 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
TM9SF3Q9HD45 PHKG2-202ENST00000424889 1566 ntTSL 2 BASIC18.79■□□□□ 0.6
TM9SF3Q9HD45 WFIKKN1-201ENST00000319070 2028 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
TM9SF3Q9HD45 METTL5-207ENST00000410097 1370 ntTSL 2 BASIC18.79■□□□□ 0.6
TM9SF3Q9HD45 TMEM176A-210ENST00000484928 1530 ntAPPRIS P2 TSL 5 BASIC18.79■□□□□ 0.6
TM9SF3Q9HD45 ABCC5-204ENST00000392579 1848 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
TM9SF3Q9HD45 ROR1-201ENST00000371079 5832 ntAPPRIS P2 TSL 1 (best) BASIC18.78■□□□□ 0.6
TM9SF3Q9HD45 LARGE2-202ENST00000401752 2516 ntAPPRIS P3 TSL 1 (best) BASIC18.78■□□□□ 0.6
TM9SF3Q9HD45 FAM76B-204ENST00000536839 2546 ntAPPRIS ALT1 TSL 5 BASIC18.78■□□□□ 0.6
TM9SF3Q9HD45 ZFC3H1-206ENST00000548100 1771 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
TM9SF3Q9HD45 ICA1-208ENST00000407906 1615 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
TM9SF3Q9HD45 NR1H2-202ENST00000411902 1466 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
TM9SF3Q9HD45 OGFOD2-205ENST00000454694 1488 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
TM9SF3Q9HD45 NUDT16L1-201ENST00000304301 1349 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
TM9SF3Q9HD45 ADGRA2-201ENST00000315215 6270 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
TM9SF3Q9HD45 KMT5B-201ENST00000304363 5837 ntAPPRIS P1 TSL 5 BASIC18.78■□□□□ 0.6
TM9SF3Q9HD45 ATPIF1-202ENST00000465645 1855 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
TM9SF3Q9HD45 AC116565.2-201ENST00000637674 1854 ntTSL 2 BASIC18.78■□□□□ 0.6
TM9SF3Q9HD45 FAM187A-202ENST00000412523 1748 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
TM9SF3Q9HD45 UBE2E3-209ENST00000602710 1556 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
TM9SF3Q9HD45 ACOT2-204ENST00000613168 1553 ntAPPRIS P5 TSL 1 (best) BASIC18.78■□□□□ 0.6
TM9SF3Q9HD45 MARK1-203ENST00000402574 5273 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
TM9SF3Q9HD45 ISCU-201ENST00000311893 994 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
TM9SF3Q9HD45 SPATA22-202ENST00000355380 1216 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
TM9SF3Q9HD45 AKAP8L-201ENST00000397410 2146 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
TM9SF3Q9HD45 TSPY21P-201ENST00000433481 731 ntBASIC18.78■□□□□ 0.6
TM9SF3Q9HD45 AP000347.1-209ENST00000437294 557 ntTSL 4 BASIC18.78■□□□□ 0.6
TM9SF3Q9HD45 LINC01063-201ENST00000441644 348 ntTSL 3 BASIC18.78■□□□□ 0.6
TM9SF3Q9HD45 HOXB-AS3-203ENST00000465846 434 ntTSL 3 BASIC18.78■□□□□ 0.6
TM9SF3Q9HD45 CHTOP-204ENST00000368694 2096 ntAPPRIS P3 TSL 1 (best) BASIC18.78■□□□□ 0.6
TM9SF3Q9HD45 KCNH1-214ENST00000640566 1365 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
TM9SF3Q9HD45 POU3F2-201ENST00000328345 4879 ntAPPRIS P1 BASIC18.78■□□□□ 0.6
TM9SF3Q9HD45 BACE2-202ENST00000330333 2993 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
TM9SF3Q9HD45 PDLIM5-205ENST00000380180 2020 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 33.5 ms