Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 ANKRD53-202ENST00000360589 1666 ntAPPRIS ALT2 TSL 2 BASIC18.64■□□□□ 0.57
TRIM39Q9HCM9 CD7-206ENST00000583376 1659 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
TRIM39Q9HCM9 LAPTM4B-204ENST00000619747 2758 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
TRIM39Q9HCM9 ICAM1-202ENST00000423829 1296 ntTSL 2 BASIC18.64■□□□□ 0.57
TRIM39Q9HCM9 AP001059.1-201ENST00000442785 523 ntTSL 3 BASIC18.64■□□□□ 0.57
TRIM39Q9HCM9 ATP5G1P1-201ENST00000448724 379 ntBASIC18.64■□□□□ 0.57
TRIM39Q9HCM9 KRT18P21-201ENST00000515767 1272 ntBASIC18.64■□□□□ 0.57
TRIM39Q9HCM9 NDUFB10-202ENST00000543683 830 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
TRIM39Q9HCM9 SPTBN4-204ENST00000392025 8671 ntAPPRIS ALT1 TSL 5 BASIC18.64■□□□□ 0.57
TRIM39Q9HCM9 ST3GAL3-205ENST00000347631 1324 ntTSL 5 BASIC18.64■□□□□ 0.57
TRIM39Q9HCM9 DMRT2-201ENST00000259622 2459 ntTSL 2 BASIC18.64■□□□□ 0.57
TRIM39Q9HCM9 SPATA6L-207ENST00000475086 1444 ntAPPRIS P1 TSL 2 BASIC18.64■□□□□ 0.57
TRIM39Q9HCM9 RPRM-201ENST00000325926 1471 ntAPPRIS P1 BASIC18.64■□□□□ 0.57
TRIM39Q9HCM9 UBTF-203ENST00000393606 2683 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
TRIM39Q9HCM9 ARNTL-203ENST00000403290 2746 ntAPPRIS ALT1 TSL 1 (best) BASIC18.64■□□□□ 0.57
TRIM39Q9HCM9 AL161938.1-201ENST00000569833 2180 ntBASIC18.64■□□□□ 0.57
TRIM39Q9HCM9 FAM129C-201ENST00000332386 2222 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
TRIM39Q9HCM9 TJP1-208ENST00000495972 2890 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
TRIM39Q9HCM9 LRRC23-201ENST00000007969 1615 ntAPPRIS P4 TSL 1 (best) BASIC18.63■□□□□ 0.57
TRIM39Q9HCM9 MAFF-202ENST00000407965 2325 ntAPPRIS P1 TSL 2 BASIC18.63■□□□□ 0.57
TRIM39Q9HCM9 SLC35A3-224ENST00000640732 1777 ntTSL 5 BASIC18.63■□□□□ 0.57
TRIM39Q9HCM9 AC116565.2-201ENST00000637674 1854 ntTSL 2 BASIC18.63■□□□□ 0.57
TRIM39Q9HCM9 ALG9-214ENST00000614444 2028 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
TRIM39Q9HCM9 TSPY8-202ENST00000383000 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
TRIM39Q9HCM9 TSPY2-202ENST00000383042 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
TRIM39Q9HCM9 MCF2L-207ENST00000397024 490 ntTSL 5 BASIC18.63■□□□□ 0.57
TRIM39Q9HCM9 TSPY3-201ENST00000424594 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
TRIM39Q9HCM9 TSPY10-202ENST00000444056 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
TRIM39Q9HCM9 NDUFS3-213ENST00000534716 1263 ntTSL 2 BASIC18.63■□□□□ 0.57
TRIM39Q9HCM9 AC079385.1-202ENST00000549203 569 ntTSL 4 BASIC18.63■□□□□ 0.57
TRIM39Q9HCM9 AC005606.2-201ENST00000564438 614 ntTSL 2 BASIC18.63■□□□□ 0.57
TRIM39Q9HCM9 MARK4-211ENST00000622871 1147 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
TRIM39Q9HCM9 GPR62-201ENST00000322241 2191 ntAPPRIS P1 BASIC18.63■□□□□ 0.57
TRIM39Q9HCM9 ARHGAP23-222ENST00000622683 5964 ntAPPRIS P2 TSL 5 BASIC18.63■□□□□ 0.57
TRIM39Q9HCM9 FBLN7-202ENST00000331203 2301 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
TRIM39Q9HCM9 STRBP-201ENST00000348403 3337 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
TRIM39Q9HCM9 KRT13-208ENST00000587544 1456 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
TRIM39Q9HCM9 NGLY1-202ENST00000280700 2473 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
TRIM39Q9HCM9 SNHG10-201ENST00000500370 1531 ntTSL 2 BASIC18.63■□□□□ 0.57
TRIM39Q9HCM9 PPP1R7-207ENST00000407025 1592 ntAPPRIS P1 TSL 5 BASIC18.63■□□□□ 0.57
TRIM39Q9HCM9 RBM42-201ENST00000262633 1680 ntAPPRIS P2 TSL 1 (best) BASIC18.63■□□□□ 0.57
TRIM39Q9HCM9 KRAS-203ENST00000556131 1696 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
TRIM39Q9HCM9 GDF7-201ENST00000272224 9749 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
TRIM39Q9HCM9 ST3GAL4-203ENST00000392669 1724 ntAPPRIS ALT1 TSL 1 (best) BASIC18.63■□□□□ 0.57
TRIM39Q9HCM9 PAQR6-201ENST00000292291 1908 ntAPPRIS P3 TSL 1 (best) BASIC18.62■□□□□ 0.57
TRIM39Q9HCM9 RPS6KB1-204ENST00000443572 1913 ntTSL 2 BASIC18.62■□□□□ 0.57
TRIM39Q9HCM9 AL512353.2-201ENST00000448759 1962 ntBASIC18.62■□□□□ 0.57
TRIM39Q9HCM9 PTPN12-201ENST00000248594 3406 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
TRIM39Q9HCM9 ANHX-202ENST00000545940 3452 ntAPPRIS P1 TSL 5 BASIC18.62■□□□□ 0.57
TRIM39Q9HCM9 PIK3R1-201ENST00000320694 2625 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
TRIM39Q9HCM9 MTA1-207ENST00000435036 2888 ntTSL 5 BASIC18.62■□□□□ 0.57
TRIM39Q9HCM9 BOLA3-202ENST00000327428 639 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
TRIM39Q9HCM9 NPM3-201ENST00000370110 877 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
TRIM39Q9HCM9 C7orf50-203ENST00000397100 1264 ntAPPRIS P2 TSL 3 BASIC18.62■□□□□ 0.57
TRIM39Q9HCM9 AL023284.2-201ENST00000405850 579 ntBASIC18.62■□□□□ 0.57
TRIM39Q9HCM9 AP006621.4-201ENST00000527021 532 ntTSL 5 BASIC18.62■□□□□ 0.57
TRIM39Q9HCM9 MIR4674-201ENST00000582457 87 ntBASIC18.62■□□□□ 0.57
TRIM39Q9HCM9 CALM3-208ENST00000596362 1203 ntAPPRIS P1 TSL 2 BASIC18.62■□□□□ 0.57
TRIM39Q9HCM9 AC022154.1-201ENST00000600303 766 ntTSL 3 BASIC18.62■□□□□ 0.57
TRIM39Q9HCM9 PNMA8A-203ENST00000602246 572 ntAPPRIS ALT2 TSL 4 BASIC18.62■□□□□ 0.57
TRIM39Q9HCM9 ADORA1-208ENST00000618295 862 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
TRIM39Q9HCM9 AL138966.2-201ENST00000621997 464 ntBASIC18.62■□□□□ 0.57
TRIM39Q9HCM9 AC009542.2-201ENST00000637483 1189 ntTSL 5 BASIC18.62■□□□□ 0.57
TRIM39Q9HCM9 FO681492.1-203ENST00000622861 1362 ntAPPRIS ALT2 TSL 5 BASIC18.62■□□□□ 0.57
TRIM39Q9HCM9 GSTZ1-204ENST00000393734 1424 ntTSL 5 BASIC18.62■□□□□ 0.57
TRIM39Q9HCM9 LGALS8-AS1-201ENST00000487567 1457 ntBASIC18.62■□□□□ 0.57
TRIM39Q9HCM9 ST6GALNAC4-201ENST00000335791 1691 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
TRIM39Q9HCM9 GPAT2P1-201ENST00000444924 1672 ntBASIC18.62■□□□□ 0.57
TRIM39Q9HCM9 JAK2-201ENST00000381652 5285 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
TRIM39Q9HCM9 AP5S1-203ENST00000379573 1848 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
TRIM39Q9HCM9 P2RY6-203ENST00000393591 1829 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
TRIM39Q9HCM9 ABCC6-209ENST00000640696 1893 ntTSL 5 BASIC18.62■□□□□ 0.57
TRIM39Q9HCM9 TUBA3FP-202ENST00000422086 1974 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
TRIM39Q9HCM9 CLDND1-203ENST00000394181 2170 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
TRIM39Q9HCM9 STMN3-201ENST00000370053 2255 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
TRIM39Q9HCM9 LIN54-209ENST00000510557 2257 ntTSL 2 BASIC18.62■□□□□ 0.57
TRIM39Q9HCM9 ATXN7L2-202ENST00000369870 2318 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
TRIM39Q9HCM9 TMEM259-209ENST00000592590 2509 ntTSL 5 BASIC18.62■□□□□ 0.57
TRIM39Q9HCM9 UBE2QL1-201ENST00000399816 4317 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
TRIM39Q9HCM9 SH2B3-201ENST00000341259 5406 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
TRIM39Q9HCM9 KLHL2-201ENST00000226725 3134 ntAPPRIS P3 TSL 1 (best) BASIC18.61■□□□□ 0.57
TRIM39Q9HCM9 AC026471.1-201ENST00000564629 3026 ntBASIC18.61■□□□□ 0.57
TRIM39Q9HCM9 AOC3-204ENST00000591562 2522 ntTSL 2 BASIC18.61■□□□□ 0.57
TRIM39Q9HCM9 CCDC50-202ENST00000392456 2454 ntAPPRIS P4 TSL 1 (best) BASIC18.61■□□□□ 0.57
TRIM39Q9HCM9 TRMT2A-203ENST00000404751 2498 ntAPPRIS ALT2 TSL 2 BASIC18.61■□□□□ 0.57
TRIM39Q9HCM9 LTBP3-217ENST00000530785 2461 ntTSL 2 BASIC18.61■□□□□ 0.57
TRIM39Q9HCM9 NOM1-201ENST00000275820 6077 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
TRIM39Q9HCM9 ASMTL-201ENST00000381317 2027 ntAPPRIS P3 TSL 1 (best) BASIC18.61■□□□□ 0.57
TRIM39Q9HCM9 SLC16A3-221ENST00000617373 2048 ntAPPRIS P1 TSL 5 BASIC18.61■□□□□ 0.57
TRIM39Q9HCM9 SLC16A3-222ENST00000619321 2015 ntAPPRIS P1 TSL 5 BASIC18.61■□□□□ 0.57
TRIM39Q9HCM9 RBM45-201ENST00000286070 1785 ntAPPRIS P2 TSL 1 (best) BASIC18.61■□□□□ 0.57
TRIM39Q9HCM9 SLC25A51-202ENST00000377716 1691 ntAPPRIS P1 TSL 3 BASIC18.61■□□□□ 0.57
TRIM39Q9HCM9 AC007743.1-203ENST00000447423 1623 ntTSL 2 BASIC18.61■□□□□ 0.57
TRIM39Q9HCM9 PHKG2-202ENST00000424889 1566 ntTSL 2 BASIC18.61■□□□□ 0.57
TRIM39Q9HCM9 PEX16-202ENST00000378750 1335 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
TRIM39Q9HCM9 SCGB3A1-201ENST00000292641 521 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
TRIM39Q9HCM9 BAD-201ENST00000309032 929 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
TRIM39Q9HCM9 TSPO2-202ENST00000373161 958 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
TRIM39Q9HCM9 FAHD2CP-202ENST00000443258 893 ntTSL 3 BASIC18.61■□□□□ 0.57
TRIM39Q9HCM9 TSPO2-203ENST00000470917 699 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 40.1 ms