Protein–RNA interactions for Protein: Q9HC56

PCDH9, Protocadherin-9, humanhuman

Predictions only

Length 1,237 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9Q9HC56 AC004980.1-204ENST00000429707 299 ntBASIC19.46■□□□□ 0.71
PCDH9Q9HC56 AL359747.1-201ENST00000442370 536 ntTSL 2 BASIC19.46■□□□□ 0.71
PCDH9Q9HC56 NME6-209ENST00000442597 757 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
PCDH9Q9HC56 AC137630.1-201ENST00000452042 782 ntTSL 4 BASIC19.46■□□□□ 0.71
PCDH9Q9HC56 AL049637.2-201ENST00000641778 930 ntBASIC19.46■□□□□ 0.71
PCDH9Q9HC56 NFATC1-201ENST00000253506 4642 ntAPPRIS P3 TSL 1 (best) BASIC19.46■□□□□ 0.71
PCDH9Q9HC56 SERPINA4-201ENST00000298841 1784 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
PCDH9Q9HC56 MFSD10-202ENST00000355443 1753 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
PCDH9Q9HC56 MCTP1-218ENST00000515393 5396 ntAPPRIS P3 TSL 1 (best) BASIC19.46■□□□□ 0.71
PCDH9Q9HC56 ARAP1-AS2-201ENST00000500163 1824 ntTSL 2 BASIC19.46■□□□□ 0.71
PCDH9Q9HC56 LARGE2-201ENST00000325468 2522 ntAPPRIS P3 TSL 1 (best) BASIC19.46■□□□□ 0.71
PCDH9Q9HC56 FUCA1-201ENST00000374479 2047 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
PCDH9Q9HC56 SMARCC2-201ENST00000267064 4076 ntAPPRIS P4 TSL 1 (best) BASIC19.46■□□□□ 0.7
PCDH9Q9HC56 MYH14-208ENST00000598205 6137 ntAPPRIS P3 TSL 5 BASIC19.45■□□□□ 0.7
PCDH9Q9HC56 AL354751.1-201ENST00000412768 1863 ntBASIC19.45■□□□□ 0.7
PCDH9Q9HC56 CHD1L-204ENST00000431239 2907 ntTSL 5 BASIC19.45■□□□□ 0.7
PCDH9Q9HC56 CARMIL2-201ENST00000334583 4687 ntAPPRIS P3 TSL 1 (best) BASIC19.45■□□□□ 0.7
PCDH9Q9HC56 PSPC1-201ENST00000338910 2407 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
PCDH9Q9HC56 AC018755.2-202ENST00000429354 1926 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
PCDH9Q9HC56 FOXI3-201ENST00000428390 2804 ntAPPRIS P1 TSL 3 BASIC19.45■□□□□ 0.7
PCDH9Q9HC56 WISP2-201ENST00000190983 1403 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
PCDH9Q9HC56 OSTM1-201ENST00000193322 4467 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
PCDH9Q9HC56 PCOLCE-AS1-201ENST00000442166 2537 ntTSL 2 BASIC19.45■□□□□ 0.7
PCDH9Q9HC56 ABHD14B-202ENST00000361143 1636 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
PCDH9Q9HC56 LRRC23-201ENST00000007969 1615 ntAPPRIS P4 TSL 1 (best) BASIC19.45■□□□□ 0.7
PCDH9Q9HC56 ANKRD10-202ENST00000310847 1193 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
PCDH9Q9HC56 C7orf50-201ENST00000357429 1294 ntAPPRIS P2 TSL 1 (best) BASIC19.45■□□□□ 0.7
PCDH9Q9HC56 NKAIN4-201ENST00000370307 793 ntTSL 5 BASIC19.45■□□□□ 0.7
PCDH9Q9HC56 MDFI-202ENST00000373050 809 ntTSL 2 BASIC19.45■□□□□ 0.7
PCDH9Q9HC56 PPP1R14BP5-201ENST00000440334 435 ntBASIC19.45■□□□□ 0.7
PCDH9Q9HC56 WDR86-AS1-203ENST00000480632 704 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
PCDH9Q9HC56 CXCL2-202ENST00000508487 1218 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
PCDH9Q9HC56 DET1-205ENST00000558413 583 ntTSL 4 BASIC19.45■□□□□ 0.7
PCDH9Q9HC56 ISG20-210ENST00000560741 800 ntAPPRIS P1 TSL 5 BASIC19.45■□□□□ 0.7
PCDH9Q9HC56 SMAD7-207ENST00000589634 1278 ntAPPRIS ALT1 TSL 4 BASIC19.45■□□□□ 0.7
PCDH9Q9HC56 CD177P1-201ENST00000606252 935 ntBASIC19.45■□□□□ 0.7
PCDH9Q9HC56 NTAN1-211ENST00000622833 1049 ntTSL 2 BASIC19.45■□□□□ 0.7
PCDH9Q9HC56 AC113410.3-201ENST00000623366 203 ntBASIC19.45■□□□□ 0.7
PCDH9Q9HC56 NTAN1-212ENST00000624579 1115 ntTSL 2 BASIC19.45■□□□□ 0.7
PCDH9Q9HC56 MATN4-201ENST00000353917 1657 ntTSL 5 BASIC19.45■□□□□ 0.7
PCDH9Q9HC56 LRP1-204ENST00000553277 1693 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
PCDH9Q9HC56 WWOX-214ENST00000566780 2482 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
PCDH9Q9HC56 FST-201ENST00000256759 2519 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
PCDH9Q9HC56 BEGAIN-202ENST00000443071 2744 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
PCDH9Q9HC56 UBP1-202ENST00000283629 4148 ntAPPRIS P3 TSL 1 (best) BASIC19.44■□□□□ 0.7
PCDH9Q9HC56 ORC5-201ENST00000297431 1958 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
PCDH9Q9HC56 CCDC17-209ENST00000528266 2181 ntAPPRIS P3 TSL 2 BASIC19.44■□□□□ 0.7
PCDH9Q9HC56 INTS10-201ENST00000397977 2804 ntAPPRIS P1 TSL 2 BASIC19.44■□□□□ 0.7
PCDH9Q9HC56 MTMR12-201ENST00000264934 2215 ntTSL 2 BASIC19.44■□□□□ 0.7
PCDH9Q9HC56 IL17RC-215ENST00000455057 2244 ntAPPRIS ALT2 TSL 1 (best) BASIC19.44■□□□□ 0.7
PCDH9Q9HC56 FCMR-202ENST00000442471 1441 ntTSL 2 BASIC19.44■□□□□ 0.7
PCDH9Q9HC56 SORCS3-201ENST00000369699 5530 ntAPPRIS P1 TSL 5 BASIC19.44■□□□□ 0.7
PCDH9Q9HC56 CHRAC1-201ENST00000220913 2488 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
PCDH9Q9HC56 RIMBP3C-201ENST00000331505 5475 ntAPPRIS ALT2 BASIC19.44■□□□□ 0.7
PCDH9Q9HC56 WDR74-201ENST00000278856 1289 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
PCDH9Q9HC56 ASH1L-AS1-202ENST00000456633 911 ntTSL 2 BASIC19.44■□□□□ 0.7
PCDH9Q9HC56 AC092718.1-201ENST00000501068 1088 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
PCDH9Q9HC56 CDIPT-204ENST00000563415 1047 ntTSL 3 BASIC19.44■□□□□ 0.7
PCDH9Q9HC56 ZNF599-203ENST00000588760 948 ntTSL 2 BASIC19.44■□□□□ 0.7
PCDH9Q9HC56 AL031985.4-201ENST00000642138 673 ntBASIC19.44■□□□□ 0.7
PCDH9Q9HC56 ENTPD6-202ENST00000360031 2766 ntAPPRIS ALT2 TSL 1 (best) BASIC19.44■□□□□ 0.7
PCDH9Q9HC56 NRXN1-208ENST00000405472 5724 ntAPPRIS ALT2 TSL 5 BASIC19.44■□□□□ 0.7
PCDH9Q9HC56 DDRGK1-201ENST00000354488 1306 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
PCDH9Q9HC56 SERPINF2-202ENST00000382061 2265 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
PCDH9Q9HC56 FAM3A-201ENST00000322269 1815 ntTSL 5 BASIC19.44■□□□□ 0.7
PCDH9Q9HC56 CELF2-217ENST00000638035 1849 ntAPPRIS P3 TSL 5 BASIC19.44■□□□□ 0.7
PCDH9Q9HC56 DENND1A-203ENST00000373624 5010 ntAPPRIS P4 TSL 5 BASIC19.44■□□□□ 0.7
PCDH9Q9HC56 RAB4A-201ENST00000366690 2966 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
PCDH9Q9HC56 GPBAR1-202ENST00000519574 1382 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
PCDH9Q9HC56 ISL2-201ENST00000290759 1881 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
PCDH9Q9HC56 CPZ-201ENST00000315782 2136 ntAPPRIS P3 TSL 1 (best) BASIC19.43■□□□□ 0.7
PCDH9Q9HC56 PNKP-207ENST00000596014 1665 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
PCDH9Q9HC56 AAED1-201ENST00000375234 2863 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
PCDH9Q9HC56 PCSK7-201ENST00000320934 4649 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
PCDH9Q9HC56 AMDHD2-201ENST00000293971 1459 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
PCDH9Q9HC56 FMN2-201ENST00000319653 6434 ntAPPRIS P1 TSL 5 BASIC19.43■□□□□ 0.7
PCDH9Q9HC56 CARHSP1-219ENST00000618335 2972 ntAPPRIS P1 TSL 4 BASIC19.43■□□□□ 0.7
PCDH9Q9HC56 AKAP17A-201ENST00000313871 3204 ntAPPRIS P2 TSL 1 (best) BASIC19.43■□□□□ 0.7
PCDH9Q9HC56 MAFG-201ENST00000357736 5040 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
PCDH9Q9HC56 SLC47A2-201ENST00000325411 2258 ntAPPRIS P3 TSL 1 (best) BASIC19.43■□□□□ 0.7
PCDH9Q9HC56 AP5S1-202ENST00000379567 1791 ntAPPRIS P1 TSL 2 BASIC19.43■□□□□ 0.7
PCDH9Q9HC56 TMEM235-203ENST00000550981 1786 ntTSL 2 BASIC19.43■□□□□ 0.7
PCDH9Q9HC56 LCE2B-201ENST00000368780 612 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
PCDH9Q9HC56 POMC-202ENST00000380794 1295 ntAPPRIS P1 TSL 2 BASIC19.43■□□□□ 0.7
PCDH9Q9HC56 FAM86C1-203ENST00000426628 952 ntAPPRIS ALT2 TSL 2 BASIC19.43■□□□□ 0.7
PCDH9Q9HC56 SPAG16-207ENST00000432529 1250 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
PCDH9Q9HC56 MIR1302-2HG-202ENST00000473358 712 ntTSL 5 BASIC19.43■□□□□ 0.7
PCDH9Q9HC56 GLRB-205ENST00000512619 728 ntTSL 3 BASIC19.43■□□□□ 0.7
PCDH9Q9HC56 ALKAL1-202ENST00000523939 536 ntAPPRIS ALT2 TSL 1 (best) BASIC19.43■□□□□ 0.7
PCDH9Q9HC56 FOSL1-204ENST00000532401 1132 ntTSL 2 BASIC19.43■□□□□ 0.7
PCDH9Q9HC56 AMN1-211ENST00000541931 880 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
PCDH9Q9HC56 AC140725.1-202ENST00000561145 712 ntTSL 5 BASIC19.43■□□□□ 0.7
PCDH9Q9HC56 AC011445.1-201ENST00000601911 877 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
PCDH9Q9HC56 ABBA01031674.1-201ENST00000635145 728 ntBASIC19.43■□□□□ 0.7
PCDH9Q9HC56 KIF1BP-204ENST00000626493 2337 ntTSL 5 BASIC19.43■□□□□ 0.7
PCDH9Q9HC56 RBM7-201ENST00000375490 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC19.43■□□□□ 0.7
PCDH9Q9HC56 UBE2E3-209ENST00000602710 1556 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
PCDH9Q9HC56 STMN3-202ENST00000540534 2351 ntTSL 2 BASIC19.43■□□□□ 0.7
PCDH9Q9HC56 NAT6-201ENST00000354862 1330 ntAPPRIS P3 TSL 1 (best) BASIC19.43■□□□□ 0.7
PCDH9Q9HC56 SRI-203ENST00000419179 1307 ntTSL 2 BASIC19.43■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 22.7 ms