Protein–RNA interactions for Protein: Q96RY7

IFT140, Intraflagellar transport protein 140 homolog, humanhuman

Predictions only

Length 1,462 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
IFT140Q96RY7 ADAD1-202ENST00000388724 1912 ntTSL 1 (best) BASIC31.19■■■□□ 2.58
IFT140Q96RY7 CIRBP-202ENST00000413636 1606 ntTSL 2 BASIC31.18■■■□□ 2.58
IFT140Q96RY7 PVR-204ENST00000406449 1344 ntAPPRIS ALT2 TSL 1 (best) BASIC31.18■■■□□ 2.58
IFT140Q96RY7 TMC6-201ENST00000306591 1681 ntTSL 5 BASIC31.18■■■□□ 2.58
IFT140Q96RY7 ANKRD13D-216ENST00000514166 2138 ntTSL 2 BASIC31.18■■■□□ 2.58
IFT140Q96RY7 MSC-201ENST00000325509 2023 ntAPPRIS P1 TSL 1 (best) BASIC31.18■■■□□ 2.58
IFT140Q96RY7 ICAM4-202ENST00000380770 1211 ntAPPRIS P3 TSL 1 (best) BASIC31.18■■■□□ 2.58
IFT140Q96RY7 C22orf39-203ENST00000399568 1005 ntTSL 1 (best) BASIC31.18■■■□□ 2.58
IFT140Q96RY7 DDT-203ENST00000403754 569 ntTSL 3 BASIC31.18■■■□□ 2.58
IFT140Q96RY7 SPCS2-207ENST00000530257 612 ntTSL 3 BASIC31.18■■■□□ 2.58
IFT140Q96RY7 CFL1-212ENST00000531413 636 ntTSL 3 BASIC31.18■■■□□ 2.58
IFT140Q96RY7 RTBDN-213ENST00000592204 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC31.18■■■□□ 2.58
IFT140Q96RY7 FAM71E1-202ENST00000595790 1225 ntAPPRIS P3 TSL 1 (best) BASIC31.18■■■□□ 2.58
IFT140Q96RY7 PRRT1-202ENST00000375150 1726 ntTSL 1 (best) BASIC31.18■■■□□ 2.58
IFT140Q96RY7 HAUS4-218ENST00000555986 1626 ntTSL 5 BASIC31.18■■■□□ 2.58
IFT140Q96RY7 AL512353.2-201ENST00000448759 1962 ntBASIC31.18■■■□□ 2.58
IFT140Q96RY7 TMED4-203ENST00000457408 2322 ntAPPRIS P1 TSL 1 (best) BASIC31.18■■■□□ 2.58
IFT140Q96RY7 WRNIP1-205ENST00000618555 2651 ntAPPRIS P1 TSL 1 (best) BASIC31.18■■■□□ 2.58
IFT140Q96RY7 DMAP1-201ENST00000315913 1552 ntAPPRIS P1 TSL 1 (best) BASIC31.17■■■□□ 2.58
IFT140Q96RY7 WDR88-202ENST00000361680 1835 ntAPPRIS ALT2 TSL 1 (best) BASIC31.17■■■□□ 2.58
IFT140Q96RY7 DNAAF3-202ENST00000455045 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC31.17■■■□□ 2.58
IFT140Q96RY7 AC114490.1-202ENST00000311990 1887 ntTSL 1 (best) BASIC31.17■■■□□ 2.58
IFT140Q96RY7 ZGLP1-201ENST00000403352 1028 ntAPPRIS ALT2 TSL 5 BASIC31.17■■■□□ 2.58
IFT140Q96RY7 SDR39U1-202ENST00000538105 1041 ntTSL 2 BASIC31.17■■■□□ 2.58
IFT140Q96RY7 AC092718.3-202ENST00000564536 1032 ntAPPRIS P5 TSL 5 BASIC31.17■■■□□ 2.58
IFT140Q96RY7 AC040169.1-201ENST00000565382 521 ntBASIC31.17■■■□□ 2.58
IFT140Q96RY7 AC134684.3-201ENST00000641758 218 ntBASIC31.17■■■□□ 2.58
IFT140Q96RY7 ZNF667-AS1-201ENST00000585445 1521 ntTSL 1 (best) BASIC31.17■■■□□ 2.58
IFT140Q96RY7 FOXJ1-201ENST00000322957 2641 ntAPPRIS P1 TSL 1 (best) BASIC31.17■■■□□ 2.58
IFT140Q96RY7 ASMTL-202ENST00000381333 2035 ntAPPRIS ALT2 TSL 2 BASIC31.16■■■□□ 2.58
IFT140Q96RY7 FAM129C-212ENST00000601861 2180 ntAPPRIS ALT2 TSL 2 BASIC31.16■■■□□ 2.58
IFT140Q96RY7 GATS-205ENST00000436886 2726 ntAPPRIS P1 TSL 1 (best) BASIC31.16■■■□□ 2.58
IFT140Q96RY7 MRPS18A-201ENST00000372116 785 ntTSL 2 BASIC31.16■■■□□ 2.58
IFT140Q96RY7 TNFSF13-204ENST00000396542 726 ntTSL 3 BASIC31.16■■■□□ 2.58
IFT140Q96RY7 MPIG6B-210ENST00000480039 790 ntAPPRIS ALT2 TSL 1 (best) BASIC31.16■■■□□ 2.58
IFT140Q96RY7 Z83851.2-201ENST00000609564 659 ntBASIC31.16■■■□□ 2.58
IFT140Q96RY7 KCNN2-208ENST00000631899 2098 ntAPPRIS ALT2 TSL 5 BASIC31.16■■■□□ 2.58
IFT140Q96RY7 UBE2E1-202ENST00000346855 1398 ntTSL 3 BASIC31.16■■■□□ 2.58
IFT140Q96RY7 CSF3-206ENST00000577675 1360 ntTSL 1 (best) BASIC31.16■■■□□ 2.58
IFT140Q96RY7 TMEM70-201ENST00000312184 2018 ntAPPRIS P1 TSL 1 (best) BASIC31.15■■■□□ 2.58
IFT140Q96RY7 BEST2-204ENST00000553030 2000 ntAPPRIS P1 TSL 5 BASIC31.15■■■□□ 2.58
IFT140Q96RY7 KLK12-202ENST00000319590 1074 ntAPPRIS ALT2 TSL 5 BASIC31.15■■■□□ 2.58
IFT140Q96RY7 MSANTD3-201ENST00000374885 786 ntTSL 2 BASIC31.15■■■□□ 2.58
IFT140Q96RY7 CST3-201ENST00000376925 873 ntAPPRIS P1 TSL 1 (best) BASIC31.15■■■□□ 2.58
IFT140Q96RY7 PLXND1-205ENST00000504689 546 ntTSL 3 BASIC31.15■■■□□ 2.58
IFT140Q96RY7 MIR3197-201ENST00000582241 73 ntBASIC31.15■■■□□ 2.58
IFT140Q96RY7 GZMM-202ENST00000592501 941 ntTSL 3 BASIC31.15■■■□□ 2.58
IFT140Q96RY7 STXBP2-222ENST00000612033 1188 ntTSL 5 BASIC31.15■■■□□ 2.58
IFT140Q96RY7 CHST13-202ENST00000615522 1146 ntTSL 5 BASIC31.15■■■□□ 2.58
IFT140Q96RY7 TXNRD3-204ENST00000640433 1932 ntAPPRIS P4 TSL 1 (best) BASIC31.15■■■□□ 2.58
IFT140Q96RY7 CBLN3-201ENST00000267406 2346 ntAPPRIS P1 TSL 1 (best) BASIC31.15■■■□□ 2.58
IFT140Q96RY7 RGMA-210ENST00000557301 1929 ntAPPRIS ALT2 TSL 2 BASIC31.15■■■□□ 2.58
IFT140Q96RY7 AC004130.1-202ENST00000603156 666 ntTSL 2 BASIC31.14■■■□□ 2.58
IFT140Q96RY7 ZNF821-221ENST00000611294 1833 ntTSL 3 BASIC31.14■■■□□ 2.58
IFT140Q96RY7 INF2-204ENST00000398337 1689 ntTSL 1 (best) BASIC31.14■■■□□ 2.58
IFT140Q96RY7 AC020907.5-201ENST00000624372 1936 ntBASIC31.14■■■□□ 2.58
IFT140Q96RY7 ZBTB46-202ENST00000302995 2335 ntAPPRIS P1 TSL 2 BASIC31.14■■■□□ 2.58
IFT140Q96RY7 SEC22C-202ENST00000273156 1608 ntTSL 1 (best) BASIC31.14■■■□□ 2.58
IFT140Q96RY7 RPS2P28-201ENST00000314255 741 ntBASIC31.14■■■□□ 2.57
IFT140Q96RY7 GUK1-202ENST00000366716 940 ntAPPRIS P3 TSL 1 (best) BASIC31.14■■■□□ 2.57
IFT140Q96RY7 DUSP15-204ENST00000398083 1212 ntTSL 5 BASIC31.14■■■□□ 2.57
IFT140Q96RY7 METTL21A-202ENST00000406927 1103 ntAPPRIS P1 TSL 1 (best) BASIC31.14■■■□□ 2.57
IFT140Q96RY7 RILPL1-205ENST00000636882 2258 ntTSL 5 BASIC31.14■■■□□ 2.57
IFT140Q96RY7 PDS5A-202ENST00000503396 2685 ntTSL 1 (best) BASIC31.14■■■□□ 2.57
IFT140Q96RY7 ORAI1-202ENST00000617316 2138 ntAPPRIS P1 TSL 1 (best) BASIC31.13■■■□□ 2.57
IFT140Q96RY7 ASCL5-201ENST00000449188 2026 ntAPPRIS P1 TSL 3 BASIC31.13■■■□□ 2.57
IFT140Q96RY7 NEU4-205ENST00000407683 2273 ntAPPRIS P1 TSL 2 BASIC31.13■■■□□ 2.57
IFT140Q96RY7 ALKBH5-203ENST00000541285 1605 ntTSL 1 (best) BASIC31.13■■■□□ 2.57
IFT140Q96RY7 STARD3-209ENST00000544210 1666 ntTSL 2 BASIC31.13■■■□□ 2.57
IFT140Q96RY7 ECSIT-202ENST00000270517 1700 ntAPPRIS P3 TSL 1 (best) BASIC31.13■■■□□ 2.57
IFT140Q96RY7 UPK3A-202ENST00000396082 627 ntAPPRIS ALT2 TSL 1 (best) BASIC31.13■■■□□ 2.57
IFT140Q96RY7 RPS8P6-201ENST00000426177 609 ntBASIC31.13■■■□□ 2.57
IFT140Q96RY7 AC004832.2-201ENST00000426397 482 ntBASIC31.13■■■□□ 2.57
IFT140Q96RY7 AC112482.1-201ENST00000492080 688 ntBASIC31.13■■■□□ 2.57
IFT140Q96RY7 REEP1-209ENST00000541910 969 ntTSL 2 BASIC31.13■■■□□ 2.57
IFT140Q96RY7 MRPL52-210ENST00000555345 895 ntTSL 2 BASIC31.13■■■□□ 2.57
IFT140Q96RY7 AC016590.1-204ENST00000586442 813 ntTSL 5 BASIC31.13■■■□□ 2.57
IFT140Q96RY7 AC083906.6-201ENST00000641366 219 ntBASIC31.13■■■□□ 2.57
IFT140Q96RY7 AC079781.4-201ENST00000641908 219 ntBASIC31.13■■■□□ 2.57
IFT140Q96RY7 ZHX3-212ENST00000558993 1528 ntTSL 5 BASIC31.13■■■□□ 2.57
IFT140Q96RY7 HTRA3-202ENST00000382512 2023 ntTSL 1 (best) BASIC31.13■■■□□ 2.57
IFT140Q96RY7 HNRNPDL-210ENST00000630827 1318 ntAPPRIS ALT2 TSL 5 BASIC31.13■■■□□ 2.57
IFT140Q96RY7 TEAD4-201ENST00000358409 1637 ntTSL 1 (best) BASIC31.12■■■□□ 2.57
IFT140Q96RY7 C21orf2-202ENST00000339818 2233 ntAPPRIS P3 TSL 1 (best) BASIC31.12■■■□□ 2.57
IFT140Q96RY7 CYP2F1-201ENST00000331105 1720 ntAPPRIS P1 TSL 1 (best) BASIC31.12■■■□□ 2.57
IFT140Q96RY7 EARS2-206ENST00000563232 1709 ntTSL 1 (best) BASIC31.12■■■□□ 2.57
IFT140Q96RY7 SOX3-201ENST00000370536 2132 ntAPPRIS P1 BASIC31.12■■■□□ 2.57
IFT140Q96RY7 FAM99B-201ENST00000382166 1067 ntTSL 5 BASIC31.12■■■□□ 2.57
IFT140Q96RY7 TMEM128-202ENST00000382753 1221 ntAPPRIS P1 TSL 1 (best) BASIC31.12■■■□□ 2.57
IFT140Q96RY7 DNAJB3-202ENST00000449667 1266 ntBASIC31.12■■■□□ 2.57
IFT140Q96RY7 AC012363.1-201ENST00000455707 575 ntTSL 4 BASIC31.12■■■□□ 2.57
IFT140Q96RY7 PDCD6-207ENST00000509581 1156 ntTSL 1 (best) BASIC31.12■■■□□ 2.57
IFT140Q96RY7 EPS8L1-205ENST00000586329 2130 ntTSL 5 BASIC31.12■■■□□ 2.57
IFT140Q96RY7 CHRNB4-202ENST00000412074 1355 ntTSL 1 (best) BASIC31.12■■■□□ 2.57
IFT140Q96RY7 ME2-216ENST00000639850 2331 ntTSL 5 BASIC31.12■■■□□ 2.57
IFT140Q96RY7 AL512380.2-201ENST00000637901 1780 ntTSL 5 BASIC31.11■■■□□ 2.57
IFT140Q96RY7 VKORC1-201ENST00000300851 876 ntTSL 2 BASIC31.11■■■□□ 2.57
IFT140Q96RY7 AP006288.1-201ENST00000446065 395 ntBASIC31.11■■■□□ 2.57
IFT140Q96RY7 LYRM1-209ENST00000568663 857 ntAPPRIS P1 TSL 4 BASIC31.11■■■□□ 2.57
IFT140Q96RY7 MTDHP3-201ENST00000594186 672 ntBASIC31.11■■■□□ 2.57
Retrieved 100 of 98,524 protein–RNA pairs in 47.9 ms