Protein–RNA interactions for Protein: Q96CG8

CTHRC1, Collagen triple helix repeat-containing protein 1, humanhuman

Predictions only

Length 243 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTHRC1Q96CG8 TSGA10IP-203ENST00000532620 1925 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
CTHRC1Q96CG8 TCIRG1-213ENST00000532635 2457 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
CTHRC1Q96CG8 KCNK4-205ENST00000538767 1389 ntTSL 2 BASIC17.43■□□□□ 0.38
CTHRC1Q96CG8 LINC01568-207ENST00000641790 1380 ntBASIC17.43■□□□□ 0.38
CTHRC1Q96CG8 EXOSC3-201ENST00000327304 1806 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
CTHRC1Q96CG8 PTS-201ENST00000280362 935 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
CTHRC1Q96CG8 ANK1-206ENST00000348036 622 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
CTHRC1Q96CG8 SNAPIN-201ENST00000368685 1030 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
CTHRC1Q96CG8 AIF1L-203ENST00000372298 849 ntTSL 3 BASIC17.43■□□□□ 0.38
CTHRC1Q96CG8 AC211429.1-201ENST00000415277 523 ntBASIC17.43■□□□□ 0.38
CTHRC1Q96CG8 AC079385.1-202ENST00000549203 569 ntTSL 4 BASIC17.43■□□□□ 0.38
CTHRC1Q96CG8 CDKN2A-213ENST00000579122 666 ntTSL 3 BASIC17.43■□□□□ 0.38
CTHRC1Q96CG8 SLC39A11-207ENST00000579732 1004 ntTSL 2 BASIC17.43■□□□□ 0.38
CTHRC1Q96CG8 AC012306.2-201ENST00000609350 630 ntBASIC17.43■□□□□ 0.38
CTHRC1Q96CG8 SUSD3-205ENST00000617293 1076 ntAPPRIS ALT2 TSL 3 BASIC17.43■□□□□ 0.38
CTHRC1Q96CG8 AL590627.2-201ENST00000637510 144 ntTSL 5 BASIC17.43■□□□□ 0.38
CTHRC1Q96CG8 KRT8P45-201ENST00000414328 1447 ntBASIC17.43■□□□□ 0.38
CTHRC1Q96CG8 AC114490.1-202ENST00000311990 1887 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
CTHRC1Q96CG8 SCARF2-202ENST00000622235 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC17.43■□□□□ 0.38
CTHRC1Q96CG8 KRT81-201ENST00000327741 1929 ntAPPRIS P2 TSL 1 (best) BASIC17.43■□□□□ 0.38
CTHRC1Q96CG8 TMEM79-203ENST00000405535 2201 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
CTHRC1Q96CG8 MID2-201ENST00000262843 2876 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
CTHRC1Q96CG8 GTF2H4-202ENST00000376316 1673 ntAPPRIS P1 TSL 5 BASIC17.42■□□□□ 0.38
CTHRC1Q96CG8 SAAL1-201ENST00000300013 1518 ntAPPRIS ALT1 TSL 2 BASIC17.42■□□□□ 0.38
CTHRC1Q96CG8 PLEKHH3-204ENST00000591022 2983 ntAPPRIS P2 TSL 1 (best) BASIC17.42■□□□□ 0.38
CTHRC1Q96CG8 TOX2-205ENST00000423191 1709 ntTSL 2 BASIC17.42■□□□□ 0.38
CTHRC1Q96CG8 EDN3-204ENST00000371028 2397 ntAPPRIS P4 TSL 5 BASIC17.42■□□□□ 0.38
CTHRC1Q96CG8 COLCA2-201ENST00000398035 1414 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
CTHRC1Q96CG8 CDHR4-201ENST00000343366 1188 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
CTHRC1Q96CG8 KRTAP5-3-201ENST00000399685 899 ntAPPRIS P1 BASIC17.42■□□□□ 0.38
CTHRC1Q96CG8 SMIM1-201ENST00000444870 546 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
CTHRC1Q96CG8 UNC5B-AS1-201ENST00000447119 647 ntTSL 2 BASIC17.42■□□□□ 0.38
CTHRC1Q96CG8 ABHD11-207ENST00000458339 890 ntTSL 3 BASIC17.42■□□□□ 0.38
CTHRC1Q96CG8 ECEL1P2-202ENST00000465689 757 ntBASIC17.42■□□□□ 0.38
CTHRC1Q96CG8 CBLN1-202ENST00000536749 718 ntAPPRIS P1 TSL 5 BASIC17.42■□□□□ 0.38
CTHRC1Q96CG8 AC006942.1-201ENST00000600669 520 ntTSL 2 BASIC17.42■□□□□ 0.38
CTHRC1Q96CG8 CR769767.2-201ENST00000622735 460 ntBASIC17.42■□□□□ 0.38
CTHRC1Q96CG8 AC097493.4-201ENST00000641197 219 ntBASIC17.42■□□□□ 0.38
CTHRC1Q96CG8 NUP50-AS1-201ENST00000426282 2076 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
CTHRC1Q96CG8 FBXL18-205ENST00000620087 2076 ntTSL 5 BASIC17.42■□□□□ 0.38
CTHRC1Q96CG8 ECEL1-201ENST00000304546 2865 ntAPPRIS P3 TSL 1 (best) BASIC17.42■□□□□ 0.38
CTHRC1Q96CG8 TJP1-208ENST00000495972 2890 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
CTHRC1Q96CG8 CKMT1A-202ENST00000413453 1911 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
CTHRC1Q96CG8 MTERF2-202ENST00000392830 1763 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
CTHRC1Q96CG8 NOP56-201ENST00000329276 2400 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
CTHRC1Q96CG8 GPR75-201ENST00000394705 2115 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
CTHRC1Q96CG8 BTG3-201ENST00000339775 1485 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
CTHRC1Q96CG8 KLHL2-201ENST00000226725 3134 ntAPPRIS P3 TSL 1 (best) BASIC17.42■□□□□ 0.38
CTHRC1Q96CG8 TMPRSS5-205ENST00000538955 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
CTHRC1Q96CG8 ZNF211-204ENST00000347302 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
CTHRC1Q96CG8 PLEKHM2-202ENST00000375799 4122 ntAPPRIS P2 TSL 1 (best) BASIC17.42■□□□□ 0.38
CTHRC1Q96CG8 PEX16-202ENST00000378750 1335 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
CTHRC1Q96CG8 KRT18P22-201ENST00000402024 1347 ntBASIC17.42■□□□□ 0.38
CTHRC1Q96CG8 TSSC4-201ENST00000333256 1686 ntAPPRIS P3 TSL 1 (best) BASIC17.42■□□□□ 0.38
CTHRC1Q96CG8 CEP78-201ENST00000277082 2542 ntAPPRIS ALT2 TSL 2 BASIC17.42■□□□□ 0.38
CTHRC1Q96CG8 PLEKHG4-201ENST00000360461 6782 ntAPPRIS P3 TSL 2 BASIC17.42■□□□□ 0.38
CTHRC1Q96CG8 CHRM4-201ENST00000433765 1511 ntAPPRIS P1 BASIC17.42■□□□□ 0.38
CTHRC1Q96CG8 SBNO2-201ENST00000361757 4923 ntAPPRIS P4 TSL 1 (best) BASIC17.42■□□□□ 0.38
CTHRC1Q96CG8 FAM213A-206ENST00000615554 2213 ntAPPRIS P1 TSL 5 BASIC17.41■□□□□ 0.38
CTHRC1Q96CG8 BAIAP2-204ENST00000428708 2095 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
CTHRC1Q96CG8 CTNNBL1-201ENST00000361383 1925 ntAPPRIS P2 TSL 1 (best) BASIC17.41■□□□□ 0.38
CTHRC1Q96CG8 LTBP3-217ENST00000530785 2461 ntTSL 2 BASIC17.41■□□□□ 0.38
CTHRC1Q96CG8 GSTZ1-204ENST00000393734 1424 ntTSL 5 BASIC17.41■□□□□ 0.38
CTHRC1Q96CG8 SH3BP2-202ENST00000435136 2318 ntAPPRIS P3 TSL 2 BASIC17.41■□□□□ 0.38
CTHRC1Q96CG8 MAPT-203ENST00000340799 5724 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
CTHRC1Q96CG8 HIBADH-201ENST00000265395 1990 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
CTHRC1Q96CG8 ACTG1-201ENST00000331925 1994 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
CTHRC1Q96CG8 PSAP-205ENST00000610929 1969 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
CTHRC1Q96CG8 DNAJC28-201ENST00000314399 1625 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
CTHRC1Q96CG8 ZDHHC17-201ENST00000426126 5259 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
CTHRC1Q96CG8 ILF2-202ENST00000368681 726 ntTSL 2 BASIC17.41■□□□□ 0.38
CTHRC1Q96CG8 NPM3-201ENST00000370110 877 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
CTHRC1Q96CG8 UQCRQ-201ENST00000378665 586 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
CTHRC1Q96CG8 AC073343.2-202ENST00000430844 532 ntTSL 4 BASIC17.41■□□□□ 0.38
CTHRC1Q96CG8 HMGB3P22-201ENST00000442010 597 ntTSL 2 BASIC17.41■□□□□ 0.38
CTHRC1Q96CG8 DCTN3-209ENST00000477738 713 ntTSL 3 BASIC17.41■□□□□ 0.38
CTHRC1Q96CG8 SLC25A11-202ENST00000544061 952 ntTSL 3 BASIC17.41■□□□□ 0.38
CTHRC1Q96CG8 AC005606.2-201ENST00000564438 614 ntTSL 2 BASIC17.41■□□□□ 0.38
CTHRC1Q96CG8 AC100793.2-201ENST00000593139 542 ntTSL 5 BASIC17.41■□□□□ 0.38
CTHRC1Q96CG8 IRF3-222ENST00000599144 1117 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
CTHRC1Q96CG8 CLN3-206ENST00000360019 1840 ntTSL 2 BASIC17.41■□□□□ 0.38
CTHRC1Q96CG8 SPATA20-226ENST00000619622 2769 ntAPPRIS P2 TSL 5 BASIC17.41■□□□□ 0.38
CTHRC1Q96CG8 SAMD11-216ENST00000620200 1874 ntTSL 5 BASIC17.41■□□□□ 0.38
CTHRC1Q96CG8 NOP14-202ENST00000398071 2535 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
CTHRC1Q96CG8 VPS26B-202ENST00000525095 1558 ntAPPRIS P1 TSL 5 BASIC17.4■□□□□ 0.38
CTHRC1Q96CG8 LDHD-202ENST00000450168 1966 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
CTHRC1Q96CG8 AC135782.1-201ENST00000537498 2154 ntTSL 2 BASIC17.4■□□□□ 0.38
CTHRC1Q96CG8 AC034236.2-201ENST00000606662 1610 ntBASIC17.4■□□□□ 0.38
CTHRC1Q96CG8 FAM72C-202ENST00000584486 2297 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
CTHRC1Q96CG8 LURAP1-201ENST00000371980 1854 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
CTHRC1Q96CG8 DLGAP4-206ENST00000475894 3110 ntAPPRIS ALT2 TSL 2 BASIC17.4■□□□□ 0.38
CTHRC1Q96CG8 KRT14-201ENST00000167586 1662 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
CTHRC1Q96CG8 TICAM1-202ENST00000621756 1650 ntTSL 5 BASIC17.4■□□□□ 0.38
CTHRC1Q96CG8 CD164L2-202ENST00000374027 1457 ntAPPRIS P3 TSL 1 (best) BASIC17.4■□□□□ 0.38
CTHRC1Q96CG8 TMEM234-201ENST00000309777 1082 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
CTHRC1Q96CG8 INSIG1-202ENST00000342407 1127 ntTSL 2 BASIC17.4■□□□□ 0.38
CTHRC1Q96CG8 HPF1-201ENST00000393381 1230 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
CTHRC1Q96CG8 HMGA1P5-201ENST00000412453 271 ntBASIC17.4■□□□□ 0.38
CTHRC1Q96CG8 AC108025.1-201ENST00000453678 1058 ntTSL 5 BASIC17.4■□□□□ 0.38
CTHRC1Q96CG8 AC004448.5-201ENST00000579897 567 ntTSL 5 BASIC17.4■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 37.7 ms