Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 ANKRD34C-AS1-201ENST00000557790 594 ntTSL 3 BASIC18.89■□□□□ 0.61
HDDC3Q8N4P3 AC020558.2-201ENST00000582325 795 ntTSL 3 BASIC18.89■□□□□ 0.61
HDDC3Q8N4P3 AC004076.1-201ENST00000596831 664 ntAPPRIS P1 TSL 2 BASIC18.89■□□□□ 0.61
HDDC3Q8N4P3 AC012313.10-201ENST00000623509 926 ntBASIC18.89■□□□□ 0.61
HDDC3Q8N4P3 CACNA1I-204ENST00000407673 5952 ntAPPRIS ALT2 TSL 1 (best) BASIC18.89■□□□□ 0.61
HDDC3Q8N4P3 BRSK2-201ENST00000308219 4089 ntAPPRIS P3 TSL 1 (best) BASIC18.89■□□□□ 0.61
HDDC3Q8N4P3 IGFALS-201ENST00000215539 2116 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
HDDC3Q8N4P3 BID-204ENST00000399767 2129 ntTSL 2 BASIC18.89■□□□□ 0.61
HDDC3Q8N4P3 KHDC1-202ENST00000370384 1430 ntAPPRIS ALT2 TSL 1 (best) BASIC18.89■□□□□ 0.61
HDDC3Q8N4P3 LINC01311-201ENST00000565162 1445 ntBASIC18.89■□□□□ 0.61
HDDC3Q8N4P3 ACY1-201ENST00000404366 1473 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
HDDC3Q8N4P3 TMED4-201ENST00000289577 2203 ntTSL 2 BASIC18.89■□□□□ 0.61
HDDC3Q8N4P3 RIMBP3C-202ENST00000433039 5784 ntAPPRIS P2 BASIC18.89■□□□□ 0.61
HDDC3Q8N4P3 PMS1-222ENST00000639501 2506 ntTSL 5 BASIC18.89■□□□□ 0.61
HDDC3Q8N4P3 MEN1-206ENST00000377321 2614 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
HDDC3Q8N4P3 CPAMD8-202ENST00000388925 5355 ntTSL 5 BASIC18.88■□□□□ 0.61
HDDC3Q8N4P3 C2CD2-202ENST00000380486 6345 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
HDDC3Q8N4P3 MSLN-205ENST00000563941 2109 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
HDDC3Q8N4P3 FAM19A4-201ENST00000295569 2292 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
HDDC3Q8N4P3 AGTR1-209ENST00000497524 2359 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
HDDC3Q8N4P3 C19orf25-202ENST00000436106 2403 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
HDDC3Q8N4P3 FAM19A3-201ENST00000361886 1056 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
HDDC3Q8N4P3 MRPL43-205ENST00000370234 798 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
HDDC3Q8N4P3 SDCBP2-203ENST00000381808 1261 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
HDDC3Q8N4P3 ZMYM5-203ENST00000382907 1092 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
HDDC3Q8N4P3 SPAG16-207ENST00000432529 1250 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
HDDC3Q8N4P3 HOXB-AS3-203ENST00000465846 434 ntTSL 3 BASIC18.88■□□□□ 0.61
HDDC3Q8N4P3 NEK7-207ENST00000538004 1036 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
HDDC3Q8N4P3 KCTD10-211ENST00000540411 866 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
HDDC3Q8N4P3 IFI27L1-206ENST00000554562 571 ntTSL 3 BASIC18.88■□□□□ 0.61
HDDC3Q8N4P3 HYMAI.1-201ENST00000620949 238 ntBASIC18.88■□□□□ 0.61
HDDC3Q8N4P3 TOR1B-201ENST00000259339 2769 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
HDDC3Q8N4P3 KLHDC4-227ENST00000622456 1422 ntTSL 5 BASIC18.88■□□□□ 0.61
HDDC3Q8N4P3 KATNBL1P6-202ENST00000562413 1466 ntBASIC18.88■□□□□ 0.61
HDDC3Q8N4P3 GLT1D1-204ENST00000442111 2995 ntAPPRIS P1 TSL 5 BASIC18.88■□□□□ 0.61
HDDC3Q8N4P3 MYO15B-232ENST00000610510 9195 ntAPPRIS P1 TSL 5 BASIC18.88■□□□□ 0.61
HDDC3Q8N4P3 CSNK2A2-201ENST00000262506 1701 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
HDDC3Q8N4P3 PRRT1-202ENST00000375150 1726 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
HDDC3Q8N4P3 HCK-206ENST00000518730 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
HDDC3Q8N4P3 ANGPTL4-201ENST00000301455 1879 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
HDDC3Q8N4P3 PLD4-204ENST00000540372 2007 ntAPPRIS ALT2 TSL 2 BASIC18.88■□□□□ 0.61
HDDC3Q8N4P3 LEFTY2-202ENST00000420304 2085 ntTSL 2 BASIC18.88■□□□□ 0.61
HDDC3Q8N4P3 GPR3-201ENST00000374024 2115 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
HDDC3Q8N4P3 AKAP8L-201ENST00000397410 2146 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
HDDC3Q8N4P3 ITGB7-209ENST00000550743 2138 ntTSL 5 BASIC18.88■□□□□ 0.61
HDDC3Q8N4P3 TRMT6-202ENST00000453074 2239 ntTSL 2 BASIC18.88■□□□□ 0.61
HDDC3Q8N4P3 NAB2-202ENST00000342556 2318 ntTSL 5 BASIC18.88■□□□□ 0.61
HDDC3Q8N4P3 MATR3-206ENST00000503811 2518 ntTSL 2 BASIC18.88■□□□□ 0.61
HDDC3Q8N4P3 MARK1-203ENST00000402574 5273 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
HDDC3Q8N4P3 CDV3-201ENST00000264993 3307 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
HDDC3Q8N4P3 DGKZ-214ENST00000527911 3337 ntAPPRIS ALT2 TSL 1 (best) BASIC18.87■□□□□ 0.61
HDDC3Q8N4P3 KRT14-201ENST00000167586 1662 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
HDDC3Q8N4P3 LGALS1-201ENST00000215909 560 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
HDDC3Q8N4P3 DNAJC8-201ENST00000263697 1759 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
HDDC3Q8N4P3 C2orf54-201ENST00000307486 2017 ntAPPRIS ALT2 TSL 1 (best) BASIC18.87■□□□□ 0.61
HDDC3Q8N4P3 HEXDC-201ENST00000327949 1733 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
HDDC3Q8N4P3 ARHGAP8-202ENST00000356099 1584 ntAPPRIS P3 TSL 1 (best) BASIC18.87■□□□□ 0.61
HDDC3Q8N4P3 ABHD14B-202ENST00000361143 1636 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
HDDC3Q8N4P3 SORCS3-201ENST00000369699 5530 ntAPPRIS P1 TSL 5 BASIC18.87■□□□□ 0.61
HDDC3Q8N4P3 PDZD7-201ENST00000370215 2032 ntTSL 2 BASIC18.87■□□□□ 0.61
HDDC3Q8N4P3 SYCE1L-201ENST00000378644 858 ntAPPRIS P2 TSL 5 BASIC18.87■□□□□ 0.61
HDDC3Q8N4P3 C7orf50-203ENST00000397100 1264 ntAPPRIS P2 TSL 3 BASIC18.87■□□□□ 0.61
HDDC3Q8N4P3 ATP5G2P1-201ENST00000433580 426 ntBASIC18.87■□□□□ 0.61
HDDC3Q8N4P3 IFT27-205ENST00000433985 1095 ntAPPRIS ALT1 TSL 1 (best) BASIC18.87■□□□□ 0.61
HDDC3Q8N4P3 ISOC2-203ENST00000438389 1566 ntTSL 2 BASIC18.87■□□□□ 0.61
HDDC3Q8N4P3 FAM3A-215ENST00000447601 1800 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
HDDC3Q8N4P3 DGUOK-AS1-203ENST00000453103 601 ntTSL 3 BASIC18.87■□□□□ 0.61
HDDC3Q8N4P3 SPOCK3-204ENST00000502330 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC18.87■□□□□ 0.61
HDDC3Q8N4P3 AC034232.1-201ENST00000506026 1064 ntBASIC18.87■□□□□ 0.61
HDDC3Q8N4P3 ZBED3-AS1-208ENST00000512001 1668 ntTSL 3 BASIC18.87■□□□□ 0.61
HDDC3Q8N4P3 LY6E-213ENST00000522528 606 ntTSL 3 BASIC18.87■□□□□ 0.61
HDDC3Q8N4P3 TFCP2-205ENST00000549867 1727 ntTSL 5 BASIC18.87■□□□□ 0.61
HDDC3Q8N4P3 C16orf74-203ENST00000602675 744 ntAPPRIS ALT2 TSL 1 (best) BASIC18.87■□□□□ 0.61
HDDC3Q8N4P3 C16orf74-206ENST00000602766 832 ntAPPRIS ALT2 TSL 3 BASIC18.87■□□□□ 0.61
HDDC3Q8N4P3 AC083849.1-201ENST00000615227 514 ntBASIC18.87■□□□□ 0.61
HDDC3Q8N4P3 ZNF534-205ENST00000617900 1085 ntTSL 2 BASIC18.87■□□□□ 0.61
HDDC3Q8N4P3 NEK3-208ENST00000618534 2414 ntAPPRIS P2 TSL 5 BASIC18.87■□□□□ 0.61
HDDC3Q8N4P3 ZNF282-204ENST00000610704 3722 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
HDDC3Q8N4P3 FUBP3-201ENST00000319725 3124 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
HDDC3Q8N4P3 MYBL2-202ENST00000396863 2704 ntTSL 2 BASIC18.87■□□□□ 0.61
HDDC3Q8N4P3 SMARCD2-203ENST00000448276 2716 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
HDDC3Q8N4P3 RUNX3-202ENST00000338888 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC18.87■□□□□ 0.61
HDDC3Q8N4P3 SLC6A18-201ENST00000324642 2121 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
HDDC3Q8N4P3 FUCA1-201ENST00000374479 2047 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
HDDC3Q8N4P3 ST3GAL4-209ENST00000526727 1967 ntAPPRIS ALT1 TSL 1 (best) BASIC18.86■□□□□ 0.61
HDDC3Q8N4P3 CYP2E1-205ENST00000463117 1912 ntAPPRIS P1 TSL 5 BASIC18.86■□□□□ 0.61
HDDC3Q8N4P3 RNPEPL1-201ENST00000270357 5658 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
HDDC3Q8N4P3 SUSD1-202ENST00000374263 2973 ntAPPRIS ALT2 TSL 2 BASIC18.86■□□□□ 0.61
HDDC3Q8N4P3 COPE-201ENST00000262812 1141 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
HDDC3Q8N4P3 PAFAH1B3-201ENST00000262890 1003 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
HDDC3Q8N4P3 CHTOP-202ENST00000368687 1094 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
HDDC3Q8N4P3 SPEG-204ENST00000396689 1274 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
HDDC3Q8N4P3 DECR2-202ENST00000424398 1012 ntTSL 5 BASIC18.86■□□□□ 0.61
HDDC3Q8N4P3 GRAMD4P1-201ENST00000435181 1110 ntBASIC18.86■□□□□ 0.61
HDDC3Q8N4P3 FGF14-AS2-201ENST00000606448 1074 ntBASIC18.86■□□□□ 0.61
HDDC3Q8N4P3 BCL10-202ENST00000620248 774 ntTSL 5 BASIC18.86■□□□□ 0.61
HDDC3Q8N4P3 NARS2-201ENST00000281038 2519 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
HDDC3Q8N4P3 IQCJ-SCHIP1-204ENST00000485419 2445 ntAPPRIS ALT2 TSL 2 BASIC18.86■□□□□ 0.61
HDDC3Q8N4P3 UBL4A-202ENST00000369660 2382 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
HDDC3Q8N4P3 SMARCD2-212ENST00000613943 2342 ntTSL 5 BASIC18.86■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 35.6 ms