Protein–RNA interactions for Protein: Q8N1B4

VPS52, Vacuolar protein sorting-associated protein 52 homolog, humanhuman

Predictions only

Length 723 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52Q8N1B4 FOXD2-201ENST00000334793 4675 ntAPPRIS P1 BASIC20.39■□□□□ 0.85
VPS52Q8N1B4 METRN-204ENST00000568223 3325 ntAPPRIS P2 TSL 1 (best) BASIC20.39■□□□□ 0.85
VPS52Q8N1B4 DUT-201ENST00000331200 2147 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
VPS52Q8N1B4 PRMT2-206ENST00000397638 2131 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
VPS52Q8N1B4 CLIP3-206ENST00000593074 2080 ntAPPRIS P1 TSL 2 BASIC20.39■□□□□ 0.85
VPS52Q8N1B4 SAYSD1-201ENST00000229903 2020 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
VPS52Q8N1B4 TH-206ENST00000381178 1910 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
VPS52Q8N1B4 STXBP2-203ENST00000441779 1914 ntTSL 2 BASIC20.39■□□□□ 0.85
VPS52Q8N1B4 KRT16P3-203ENST00000580621 1939 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
VPS52Q8N1B4 GABRD-205ENST00000638771 1707 ntAPPRIS ALT2 TSL 3 BASIC20.39■□□□□ 0.85
VPS52Q8N1B4 SMARCD1-201ENST00000381513 3237 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
VPS52Q8N1B4 NUDT4-202ENST00000415493 4839 ntAPPRIS ALT1 TSL 1 (best) BASIC20.38■□□□□ 0.85
VPS52Q8N1B4 TAF5L-201ENST00000258281 3112 ntAPPRIS P1 TSL 5 BASIC20.38■□□□□ 0.85
VPS52Q8N1B4 LIMS2-207ENST00000409808 2315 ntAPPRIS ALT1 TSL 5 BASIC20.38■□□□□ 0.85
VPS52Q8N1B4 NHLRC1-201ENST00000340650 2248 ntAPPRIS P1 BASIC20.38■□□□□ 0.85
VPS52Q8N1B4 MOB3C-202ENST00000319928 2822 ntAPPRIS P1 TSL 2 BASIC20.38■□□□□ 0.85
VPS52Q8N1B4 ART1-201ENST00000250693 1312 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
VPS52Q8N1B4 TRMU-201ENST00000290846 1940 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
VPS52Q8N1B4 KIF16B-206ENST00000636835 5109 ntAPPRIS ALT2 TSL 1 (best) BASIC20.38■□□□□ 0.85
VPS52Q8N1B4 BUB3-202ENST00000368859 667 ntTSL 3 BASIC20.38■□□□□ 0.85
VPS52Q8N1B4 UBE2E1-AS1-201ENST00000426702 778 ntTSL 3 BASIC20.38■□□□□ 0.85
VPS52Q8N1B4 CHCHD3-203ENST00000448878 1038 ntTSL 5 BASIC20.38■□□□□ 0.85
VPS52Q8N1B4 MAP3K13-213ENST00000454237 526 ntTSL 3 BASIC20.38■□□□□ 0.85
VPS52Q8N1B4 AC051649.1-201ENST00000509204 330 ntTSL 3 BASIC20.38■□□□□ 0.85
VPS52Q8N1B4 VENTXP5-201ENST00000523979 775 ntBASIC20.38■□□□□ 0.85
VPS52Q8N1B4 AC127526.4-201ENST00000527970 983 ntTSL 3 BASIC20.38■□□□□ 0.85
VPS52Q8N1B4 AL133352.1-203ENST00000557395 1234 ntAPPRIS P5 TSL 2 BASIC20.38■□□□□ 0.85
VPS52Q8N1B4 GCSHP2-201ENST00000560971 527 ntBASIC20.38■□□□□ 0.85
VPS52Q8N1B4 DFFB-212ENST00000625756 649 ntTSL 5 BASIC20.38■□□□□ 0.85
VPS52Q8N1B4 AL158211.5-201ENST00000623583 2518 ntBASIC20.38■□□□□ 0.85
VPS52Q8N1B4 FNBP1-203ENST00000443566 5227 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
VPS52Q8N1B4 STMN3-201ENST00000370053 2255 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
VPS52Q8N1B4 TMPRSS6-207ENST00000442782 1695 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
VPS52Q8N1B4 IRGQ-205ENST00000602269 2210 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
VPS52Q8N1B4 DIO3-201ENST00000510508 2102 ntAPPRIS P1 BASIC20.38■□□□□ 0.85
VPS52Q8N1B4 HAUS4-217ENST00000555367 1454 ntTSL 5 BASIC20.37■□□□□ 0.85
VPS52Q8N1B4 AC107959.1-202ENST00000502083 1945 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
VPS52Q8N1B4 AVL9-209ENST00000640103 1367 ntTSL 5 BASIC20.37■□□□□ 0.85
VPS52Q8N1B4 DVL3-203ENST00000431765 2294 ntTSL 5 BASIC20.37■□□□□ 0.85
VPS52Q8N1B4 LY6E-203ENST00000517503 1335 ntAPPRIS ALT2 TSL 3 BASIC20.37■□□□□ 0.85
VPS52Q8N1B4 KTI12-201ENST00000371614 1714 ntAPPRIS P1 BASIC20.37■□□□□ 0.85
VPS52Q8N1B4 NMRK1-202ENST00000376808 1121 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
VPS52Q8N1B4 AC005091.1-201ENST00000441955 1190 ntTSL 3 BASIC20.37■□□□□ 0.85
VPS52Q8N1B4 ZNF331-214ENST00000511154 2120 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
VPS52Q8N1B4 NPM2-204ENST00000518119 1190 ntAPPRIS P2 TSL 1 (best) BASIC20.37■□□□□ 0.85
VPS52Q8N1B4 PTK2-216ENST00000519881 863 ntTSL 3 BASIC20.37■□□□□ 0.85
VPS52Q8N1B4 MTHFS-202ENST00000559722 948 ntTSL 2 BASIC20.37■□□□□ 0.85
VPS52Q8N1B4 AL136038.3-201ENST00000561909 1096 ntBASIC20.37■□□□□ 0.85
VPS52Q8N1B4 AL158151.3-201ENST00000599172 696 ntTSL 5 BASIC20.37■□□□□ 0.85
VPS52Q8N1B4 MAN1A1-201ENST00000368468 5014 ntAPPRIS P1 TSL 2 BASIC20.37■□□□□ 0.85
VPS52Q8N1B4 FAM110D-201ENST00000374268 2858 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
VPS52Q8N1B4 DMRT2-205ENST00000382255 2367 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
VPS52Q8N1B4 ITPKB-202ENST00000366784 3146 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
VPS52Q8N1B4 ACAA1-201ENST00000301810 1540 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
VPS52Q8N1B4 CD151-201ENST00000322008 1548 ntAPPRIS P2 TSL 1 (best) BASIC20.37■□□□□ 0.85
VPS52Q8N1B4 WNK2-202ENST00000395477 6834 ntAPPRIS ALT2 TSL 5 BASIC20.37■□□□□ 0.85
VPS52Q8N1B4 PAQR4-203ENST00000572687 2251 ntTSL 2 BASIC20.37■□□□□ 0.85
VPS52Q8N1B4 SIX5-201ENST00000317578 3318 ntAPPRIS P2 TSL 1 (best) BASIC20.37■□□□□ 0.85
VPS52Q8N1B4 ADAP2-201ENST00000330889 2934 ntAPPRIS P2 TSL 1 (best) BASIC20.37■□□□□ 0.85
VPS52Q8N1B4 CRTC1-204ENST00000601916 1834 ntTSL 5 BASIC20.37■□□□□ 0.85
VPS52Q8N1B4 GRB10-208ENST00000403097 5432 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
VPS52Q8N1B4 GDF7-201ENST00000272224 9749 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
VPS52Q8N1B4 PRPS1-203ENST00000372428 1748 ntTSL 2 BASIC20.36■□□□□ 0.85
VPS52Q8N1B4 CDH23-212ENST00000616684 4814 ntTSL 5 BASIC20.36■□□□□ 0.85
VPS52Q8N1B4 WFIKKN1-201ENST00000319070 2028 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
VPS52Q8N1B4 AKIRIN1-201ENST00000372984 1330 ntTSL 2 BASIC20.36■□□□□ 0.85
VPS52Q8N1B4 GLB1-201ENST00000307363 2616 ntAPPRIS P4 TSL 1 (best) BASIC20.36■□□□□ 0.85
VPS52Q8N1B4 PXMP4-201ENST00000217398 979 ntTSL 2 BASIC20.36■□□□□ 0.85
VPS52Q8N1B4 CD1E-210ENST00000368165 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC20.36■□□□□ 0.85
VPS52Q8N1B4 STARP1-201ENST00000397973 869 ntBASIC20.36■□□□□ 0.85
VPS52Q8N1B4 ELOB-202ENST00000409477 997 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
VPS52Q8N1B4 AL596442.1-201ENST00000429305 429 ntTSL 2 BASIC20.36■□□□□ 0.85
VPS52Q8N1B4 CD1E-214ENST00000452291 745 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
VPS52Q8N1B4 PDZD7-203ENST00000470414 1057 ntTSL 2 BASIC20.36■□□□□ 0.85
VPS52Q8N1B4 AP006621.4-201ENST00000527021 532 ntTSL 5 BASIC20.36■□□□□ 0.85
VPS52Q8N1B4 NUDT16L1-203ENST00000586252 922 ntTSL 3 BASIC20.36■□□□□ 0.85
VPS52Q8N1B4 LINC00910-203ENST00000587874 544 ntTSL 4 BASIC20.36■□□□□ 0.85
VPS52Q8N1B4 AL121894.2-201ENST00000602977 491 ntBASIC20.36■□□□□ 0.85
VPS52Q8N1B4 AC064834.1-201ENST00000606986 503 ntTSL 3 BASIC20.36■□□□□ 0.85
VPS52Q8N1B4 SLF2-205ENST00000609386 891 ntAPPRIS ALT2 BASIC20.36■□□□□ 0.85
VPS52Q8N1B4 ZNF12-204ENST00000405858 5051 ntAPPRIS P4 TSL 1 (best) BASIC20.36■□□□□ 0.85
VPS52Q8N1B4 UCHL5-202ENST00000367449 1507 ntAPPRIS ALT1 TSL 1 (best) BASIC20.36■□□□□ 0.85
VPS52Q8N1B4 CERS4-201ENST00000251363 1797 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
VPS52Q8N1B4 KCTD20-210ENST00000536244 5345 ntTSL 2 BASIC20.36■□□□□ 0.85
VPS52Q8N1B4 AC138430.1-201ENST00000586064 5409 ntTSL 2 BASIC20.36■□□□□ 0.85
VPS52Q8N1B4 RHBDL1-201ENST00000219551 1560 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
VPS52Q8N1B4 GPR137-204ENST00000438980 1596 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
VPS52Q8N1B4 SAXO1-202ENST00000380534 2099 ntAPPRIS P3 TSL 1 (best) BASIC20.35■□□□□ 0.85
VPS52Q8N1B4 MFHAS1-201ENST00000276282 6414 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
VPS52Q8N1B4 HIC1-201ENST00000322941 3053 ntAPPRIS P1 TSL 5 BASIC20.35■□□□□ 0.85
VPS52Q8N1B4 HCG4P8-203ENST00000443049 980 ntBASIC20.35■□□□□ 0.85
VPS52Q8N1B4 CD81-212ENST00000526072 1172 ntTSL 5 BASIC20.35■□□□□ 0.85
VPS52Q8N1B4 ZNF444P1-201ENST00000559497 298 ntBASIC20.35■□□□□ 0.85
VPS52Q8N1B4 GFOD2-207ENST00000602855 819 ntTSL 3 BASIC20.35■□□□□ 0.85
VPS52Q8N1B4 AC069148.1-201ENST00000608741 768 ntBASIC20.35■□□□□ 0.85
VPS52Q8N1B4 CSNK1D-203ENST00000392334 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC20.35■□□□□ 0.85
VPS52Q8N1B4 STIM2-211ENST00000639195 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC20.35■□□□□ 0.85
VPS52Q8N1B4 CPEB1-214ENST00000617522 2220 ntTSL 5 BASIC20.35■□□□□ 0.85
VPS52Q8N1B4 CACNA1B-206ENST00000371372 9790 ntAPPRIS P4 TSL 5 BASIC20.35■□□□□ 0.85
VPS52Q8N1B4 HMGA1-205ENST00000447654 2159 ntAPPRIS P4 TSL 1 (best) BASIC20.35■□□□□ 0.85
Retrieved 100 of 98,524 protein–RNA pairs in 28.5 ms