Protein–RNA interactions for Protein: Q8IYX3

CCDC116, Coiled-coil domain-containing protein 116, humanhuman

Predictions only

Length 515 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC116Q8IYX3 KRT8P3-201ENST00000519669 1449 ntBASIC17.74■□□□□ 0.43
CCDC116Q8IYX3 PDIA5-201ENST00000316218 1799 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
CCDC116Q8IYX3 MFSD10-202ENST00000355443 1753 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
CCDC116Q8IYX3 CDK13-207ENST00000613626 3099 ntTSL 5 BASIC17.74■□□□□ 0.43
CCDC116Q8IYX3 SPOPL-201ENST00000280098 6025 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
CCDC116Q8IYX3 TNFRSF1A-213ENST00000540022 1527 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
CCDC116Q8IYX3 FAM213A-206ENST00000615554 2213 ntAPPRIS P1 TSL 5 BASIC17.74■□□□□ 0.43
CCDC116Q8IYX3 TEKT5-201ENST00000283025 1612 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
CCDC116Q8IYX3 FAM118A-202ENST00000405673 1612 ntTSL 5 BASIC17.74■□□□□ 0.43
CCDC116Q8IYX3 METTL27-201ENST00000297873 941 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
CCDC116Q8IYX3 DAB1-202ENST00000371230 1150 ntTSL 5 BASIC17.74■□□□□ 0.43
CCDC116Q8IYX3 POLR2J-202ENST00000393794 784 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
CCDC116Q8IYX3 POLR2D-202ENST00000409698 806 ntTSL 2 BASIC17.74■□□□□ 0.43
CCDC116Q8IYX3 SPAG16-207ENST00000432529 1250 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
CCDC116Q8IYX3 DBNL-214ENST00000456905 1241 ntTSL 2 BASIC17.74■□□□□ 0.43
CCDC116Q8IYX3 FDX2-206ENST00000492239 773 ntTSL 2 BASIC17.74■□□□□ 0.43
CCDC116Q8IYX3 AC091153.3-201ENST00000497885 472 ntTSL 2 BASIC17.74■□□□□ 0.43
CCDC116Q8IYX3 FAM86C2P-201ENST00000525180 435 ntTSL 4 BASIC17.74■□□□□ 0.43
CCDC116Q8IYX3 TARBP2-220ENST00000552857 916 ntTSL 5 BASIC17.74■□□□□ 0.43
CCDC116Q8IYX3 IMPA2-208ENST00000589238 923 ntTSL 3 BASIC17.74■□□□□ 0.43
CCDC116Q8IYX3 AC008649.1-201ENST00000589557 516 ntTSL 2 BASIC17.74■□□□□ 0.43
CCDC116Q8IYX3 PRKACA-209ENST00000590853 1101 ntTSL 5 BASIC17.74■□□□□ 0.43
CCDC116Q8IYX3 DGCR10-201ENST00000609839 495 ntBASIC17.74■□□□□ 0.43
CCDC116Q8IYX3 RANBP10-201ENST00000317506 5341 ntAPPRIS P2 TSL 1 (best) BASIC17.74■□□□□ 0.43
CCDC116Q8IYX3 RANBP10-209ENST00000630626 5305 ntAPPRIS ALT2 TSL 5 BASIC17.74■□□□□ 0.43
CCDC116Q8IYX3 HTRA3-201ENST00000307358 2541 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
CCDC116Q8IYX3 SLC6A9-201ENST00000357730 2168 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
CCDC116Q8IYX3 MTDH-203ENST00000519934 2184 ntTSL 5 BASIC17.74■□□□□ 0.43
CCDC116Q8IYX3 C19orf25-203ENST00000585675 1837 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
CCDC116Q8IYX3 KRT6C-201ENST00000252250 2289 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
CCDC116Q8IYX3 KRT6B-201ENST00000252252 2282 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
CCDC116Q8IYX3 RPRM-201ENST00000325926 1471 ntAPPRIS P1 BASIC17.74■□□□□ 0.43
CCDC116Q8IYX3 ENOPH1-201ENST00000273920 2025 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
CCDC116Q8IYX3 AC093525.10-201ENST00000625130 1569 ntBASIC17.74■□□□□ 0.43
CCDC116Q8IYX3 FKBP8-206ENST00000596558 1756 ntAPPRIS ALT1 TSL 2 BASIC17.74■□□□□ 0.43
CCDC116Q8IYX3 Z98044.1-201ENST00000632503 1764 ntBASIC17.74■□□□□ 0.43
CCDC116Q8IYX3 MFHAS1-201ENST00000276282 6414 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
CCDC116Q8IYX3 PLCXD1-202ENST00000381663 1863 ntAPPRIS P2 TSL 5 BASIC17.73■□□□□ 0.43
CCDC116Q8IYX3 NFKBIZ-201ENST00000326151 2058 ntTSL 2 BASIC17.73■□□□□ 0.43
CCDC116Q8IYX3 PER3-203ENST00000377541 1524 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
CCDC116Q8IYX3 ARHGAP28-203ENST00000383472 2295 ntAPPRIS ALT2 TSL 5 BASIC17.73■□□□□ 0.43
CCDC116Q8IYX3 LRRC36-201ENST00000329956 2395 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
CCDC116Q8IYX3 EDN3-204ENST00000371028 2397 ntAPPRIS P4 TSL 5 BASIC17.73■□□□□ 0.43
CCDC116Q8IYX3 RNF167-205ENST00000571816 1728 ntAPPRIS P3 TSL 5 BASIC17.73■□□□□ 0.43
CCDC116Q8IYX3 NFATC1-201ENST00000253506 4642 ntAPPRIS P3 TSL 1 (best) BASIC17.73■□□□□ 0.43
CCDC116Q8IYX3 AL138781.2-201ENST00000617896 1843 ntBASIC17.73■□□□□ 0.43
CCDC116Q8IYX3 DKK3-202ENST00000396505 2650 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
CCDC116Q8IYX3 RREB1-201ENST00000334984 5789 ntAPPRIS ALT2 TSL 1 (best) BASIC17.73■□□□□ 0.43
CCDC116Q8IYX3 AC093627.4-201ENST00000484550 5008 ntTSL 2 BASIC17.73■□□□□ 0.43
CCDC116Q8IYX3 FAM206A-201ENST00000322940 2134 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
CCDC116Q8IYX3 USF2-203ENST00000379134 648 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
CCDC116Q8IYX3 SNORA78-201ENST00000459373 127 ntBASIC17.73■□□□□ 0.43
CCDC116Q8IYX3 AP002433.1-201ENST00000525548 964 ntTSL 3 BASIC17.73■□□□□ 0.43
CCDC116Q8IYX3 TMEM263-208ENST00000551489 621 ntTSL 4 BASIC17.73■□□□□ 0.43
CCDC116Q8IYX3 AC100839.1-201ENST00000559589 577 ntTSL 4 BASIC17.73■□□□□ 0.43
CCDC116Q8IYX3 TGIF1-222ENST00000577543 729 ntTSL 3 BASIC17.73■□□□□ 0.43
CCDC116Q8IYX3 AC016737.2-201ENST00000609273 358 ntTSL 3 BASIC17.73■□□□□ 0.43
CCDC116Q8IYX3 ASRGL1-211ENST00000628829 1161 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
CCDC116Q8IYX3 CDCA7L-203ENST00000406877 3066 ntAPPRIS P3 TSL 1 (best) BASIC17.73■□□□□ 0.43
CCDC116Q8IYX3 ANKRD13D-201ENST00000308440 2219 ntTSL 2 BASIC17.73■□□□□ 0.43
CCDC116Q8IYX3 GAL3ST4-204ENST00000423751 1695 ntTSL 3 BASIC17.73■□□□□ 0.43
CCDC116Q8IYX3 TMEM250-201ENST00000418388 2823 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
CCDC116Q8IYX3 MCU-202ENST00000373053 2949 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
CCDC116Q8IYX3 GJA4-201ENST00000342280 1622 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
CCDC116Q8IYX3 TMEM91-210ENST00000542945 1610 ntTSL 2 BASIC17.72■□□□□ 0.43
CCDC116Q8IYX3 CNOT9-209ENST00000627282 1621 ntTSL 2 BASIC17.72■□□□□ 0.43
CCDC116Q8IYX3 CDC14B-208ENST00000463569 1734 ntAPPRIS ALT2 TSL 5 BASIC17.72■□□□□ 0.43
CCDC116Q8IYX3 GPR42-201ENST00000454971 1804 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
CCDC116Q8IYX3 KRT81-201ENST00000327741 1929 ntAPPRIS P2 TSL 1 (best) BASIC17.72■□□□□ 0.43
CCDC116Q8IYX3 PITPNC1-201ENST00000299954 6359 ntAPPRIS ALT2 TSL 5 BASIC17.72■□□□□ 0.43
CCDC116Q8IYX3 UVSSA-207ENST00000511216 2927 ntAPPRIS P2 TSL 1 (best) BASIC17.72■□□□□ 0.43
CCDC116Q8IYX3 SYNM-204ENST00000594047 6407 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
CCDC116Q8IYX3 ZBTB46-203ENST00000395104 5198 ntAPPRIS P1 TSL 2 BASIC17.72■□□□□ 0.43
CCDC116Q8IYX3 IL4I1-202ENST00000391826 1863 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
CCDC116Q8IYX3 SEPT9-246ENST00000592951 1793 ntAPPRIS ALT2 TSL 2 BASIC17.72■□□□□ 0.43
CCDC116Q8IYX3 BMP8B-201ENST00000372827 4822 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
CCDC116Q8IYX3 MFSD1-201ENST00000264266 1594 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
CCDC116Q8IYX3 SLC9A6-201ENST00000370695 4725 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
CCDC116Q8IYX3 OGFOD2-222ENST00000545317 1481 ntTSL 2 BASIC17.72■□□□□ 0.43
CCDC116Q8IYX3 HAUS4-217ENST00000555367 1454 ntTSL 5 BASIC17.72■□□□□ 0.43
CCDC116Q8IYX3 AC096733.2-201ENST00000609937 1394 ntBASIC17.72■□□□□ 0.43
CCDC116Q8IYX3 JAKMIP1-208ENST00000637373 1362 ntTSL 5 BASIC17.72■□□□□ 0.43
CCDC116Q8IYX3 PMVK-201ENST00000368467 1280 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
CCDC116Q8IYX3 RHOG-202ENST00000396978 1066 ntAPPRIS P1 TSL 3 BASIC17.72■□□□□ 0.43
CCDC116Q8IYX3 CRYGFP-201ENST00000418459 633 ntBASIC17.72■□□□□ 0.43
CCDC116Q8IYX3 MFAP1P1-201ENST00000442257 1255 ntBASIC17.72■□□□□ 0.43
CCDC116Q8IYX3 AL445645.1-201ENST00000451318 1019 ntTSL 2 BASIC17.72■□□□□ 0.43
CCDC116Q8IYX3 USP46-AS1-201ENST00000503051 1048 ntTSL 3 BASIC17.72■□□□□ 0.43
CCDC116Q8IYX3 MIR4785-201ENST00000585005 73 ntBASIC17.72■□□□□ 0.43
CCDC116Q8IYX3 UBL5-202ENST00000586895 432 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
CCDC116Q8IYX3 TNNT1-208ENST00000587465 1065 ntAPPRIS ALT2 TSL 5 BASIC17.72■□□□□ 0.43
CCDC116Q8IYX3 TYROBP-209ENST00000589517 415 ntAPPRIS ALT1 TSL 1 (best) BASIC17.72■□□□□ 0.43
CCDC116Q8IYX3 KLHL26-205ENST00000599006 989 ntTSL 5 BASIC17.72■□□□□ 0.43
CCDC116Q8IYX3 DENND2A-201ENST00000275884 3735 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
CCDC116Q8IYX3 FOXP4-202ENST00000373057 3300 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
CCDC116Q8IYX3 CNNM3-202ENST00000377060 3308 ntTSL 2 BASIC17.72■□□□□ 0.43
CCDC116Q8IYX3 TMEM214-203ENST00000404032 2830 ntTSL 2 BASIC17.72■□□□□ 0.43
CCDC116Q8IYX3 TMEM79-203ENST00000405535 2201 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
CCDC116Q8IYX3 HOXA13-201ENST00000222753 5030 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
CCDC116Q8IYX3 ARAP1-AS2-201ENST00000500163 1824 ntTSL 2 BASIC17.72■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 35 ms