Protein–RNA interactions for Protein: Q8IXF0

NPAS3, Neuronal PAS domain-containing protein 3, humanhuman

Predictions only

Length 933 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPAS3Q8IXF0 RNF126P1-202ENST00000569893 925 ntBASIC19.48■□□□□ 0.71
NPAS3Q8IXF0 SYNGR2-202ENST00000585591 949 ntAPPRIS P1 TSL 5 BASIC19.48■□□□□ 0.71
NPAS3Q8IXF0 ZNF549-203ENST00000594943 556 ntTSL 4 BASIC19.48■□□□□ 0.71
NPAS3Q8IXF0 HAND2-AS1-237ENST00000616485 2420 ntTSL 2 BASIC19.48■□□□□ 0.71
NPAS3Q8IXF0 MOK-201ENST00000361847 1940 ntAPPRIS P3 TSL 1 (best) BASIC19.48■□□□□ 0.71
NPAS3Q8IXF0 CYP2D7-201ENST00000358097 1655 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
NPAS3Q8IXF0 PTX4-201ENST00000293922 1422 ntAPPRIS P2 TSL 1 (best) BASIC19.48■□□□□ 0.71
NPAS3Q8IXF0 KRT18P1-202ENST00000452408 1331 ntBASIC19.48■□□□□ 0.71
NPAS3Q8IXF0 SMIM10L2A-201ENST00000417443 5230 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
NPAS3Q8IXF0 NFE2L1-204ENST00000536222 2172 ntTSL 2 BASIC19.47■□□□□ 0.71
NPAS3Q8IXF0 MYBL2-202ENST00000396863 2704 ntTSL 2 BASIC19.47■□□□□ 0.71
NPAS3Q8IXF0 RIIAD1-201ENST00000326413 1772 ntTSL 2 BASIC19.47■□□□□ 0.71
NPAS3Q8IXF0 JPH2-201ENST00000342272 1923 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
NPAS3Q8IXF0 TEX13A-201ENST00000600991 1377 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
NPAS3Q8IXF0 RUNX3-202ENST00000338888 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC19.47■□□□□ 0.71
NPAS3Q8IXF0 AP000679.1-202ENST00000319763 2081 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
NPAS3Q8IXF0 RCC2P3-201ENST00000418112 1537 ntBASIC19.47■□□□□ 0.71
NPAS3Q8IXF0 MARK2-204ENST00000402010 4728 ntAPPRIS ALT2 TSL 1 (best) BASIC19.47■□□□□ 0.71
NPAS3Q8IXF0 MELTF-202ENST00000296351 1650 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
NPAS3Q8IXF0 RAB11FIP4-201ENST00000394744 1968 ntTSL 2 BASIC19.47■□□□□ 0.71
NPAS3Q8IXF0 INSL3-201ENST00000317306 755 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
NPAS3Q8IXF0 RPS14-203ENST00000407193 784 ntAPPRIS P1 TSL 2 BASIC19.47■□□□□ 0.71
NPAS3Q8IXF0 FAAHP1-202ENST00000446499 1238 ntBASIC19.47■□□□□ 0.71
NPAS3Q8IXF0 LINC01582-202ENST00000561215 452 ntTSL 4 BASIC19.47■□□□□ 0.71
NPAS3Q8IXF0 AC009084.1-201ENST00000566869 317 ntTSL 5 BASIC19.47■□□□□ 0.71
NPAS3Q8IXF0 ANAPC11-217ENST00000579978 575 ntAPPRIS P1 TSL 2 BASIC19.47■□□□□ 0.71
NPAS3Q8IXF0 KISS1R-203ENST00000606939 964 ntTSL 5 BASIC19.47■□□□□ 0.71
NPAS3Q8IXF0 MARK4-211ENST00000622871 1147 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
NPAS3Q8IXF0 NEU4-201ENST00000325935 2288 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
NPAS3Q8IXF0 SPSB3-201ENST00000301717 1449 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
NPAS3Q8IXF0 PHLDB3-201ENST00000292140 2591 ntAPPRIS P1 TSL 5 BASIC19.47■□□□□ 0.71
NPAS3Q8IXF0 GDF5OS-201ENST00000374375 1734 ntAPPRIS P1 TSL 2 BASIC19.47■□□□□ 0.71
NPAS3Q8IXF0 PRRT1-202ENST00000375150 1726 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
NPAS3Q8IXF0 SAE1-203ENST00000413379 2313 ntTSL 2 BASIC19.47■□□□□ 0.71
NPAS3Q8IXF0 SENP5-204ENST00000445299 2491 ntTSL 2 BASIC19.47■□□□□ 0.71
NPAS3Q8IXF0 ESYT2-201ENST00000251527 5960 ntAPPRIS P2 TSL 1 (best) BASIC19.47■□□□□ 0.71
NPAS3Q8IXF0 TMEFF1-201ENST00000374879 2611 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
NPAS3Q8IXF0 PIF1-202ENST00000333425 2278 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
NPAS3Q8IXF0 FKBP3-201ENST00000216330 1684 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
NPAS3Q8IXF0 PLEKHH3-201ENST00000293349 2987 ntAPPRIS ALT1 TSL 5 BASIC19.46■□□□□ 0.71
NPAS3Q8IXF0 FAM189B-201ENST00000350210 2379 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
NPAS3Q8IXF0 AL035252.2-201ENST00000454676 3168 ntTSL 2 BASIC19.46■□□□□ 0.71
NPAS3Q8IXF0 BX005266.2-202ENST00000446626 2245 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
NPAS3Q8IXF0 LGALS1-201ENST00000215909 560 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
NPAS3Q8IXF0 ELANE-201ENST00000263621 920 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
NPAS3Q8IXF0 CD1E-211ENST00000368166 1271 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
NPAS3Q8IXF0 KRT18P23-201ENST00000435622 1283 ntBASIC19.46■□□□□ 0.71
NPAS3Q8IXF0 ENO1-AS1-201ENST00000442636 456 ntTSL 2 BASIC19.46■□□□□ 0.71
NPAS3Q8IXF0 TPSP2-201ENST00000561760 610 ntBASIC19.46■□□□□ 0.71
NPAS3Q8IXF0 TBCB-205ENST00000585746 875 ntTSL 3 BASIC19.46■□□□□ 0.71
NPAS3Q8IXF0 TMIGD2-202ENST00000595645 1212 ntAPPRIS ALT2 TSL 1 (best) BASIC19.46■□□□□ 0.71
NPAS3Q8IXF0 TMEM104-202ENST00000417024 1781 ntTSL 2 BASIC19.46■□□□□ 0.71
NPAS3Q8IXF0 RARA-201ENST00000254066 2414 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
NPAS3Q8IXF0 FBXL16-203ENST00000562563 2257 ntTSL 2 BASIC19.46■□□□□ 0.71
NPAS3Q8IXF0 CENPT-215ENST00000564817 1638 ntAPPRIS ALT2 TSL 5 BASIC19.46■□□□□ 0.71
NPAS3Q8IXF0 AL512353.2-201ENST00000448759 1962 ntBASIC19.46■□□□□ 0.71
NPAS3Q8IXF0 PHOSPHO1-201ENST00000310544 1816 ntAPPRIS P1 TSL 2 BASIC19.46■□□□□ 0.71
NPAS3Q8IXF0 NR1H2-211ENST00000599105 1830 ntAPPRIS ALT2 TSL 5 BASIC19.46■□□□□ 0.71
NPAS3Q8IXF0 AC008556.1-201ENST00000610908 2040 ntBASIC19.46■□□□□ 0.71
NPAS3Q8IXF0 APBB1IP-201ENST00000356785 1513 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
NPAS3Q8IXF0 MCIDAS-201ENST00000513312 1736 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
NPAS3Q8IXF0 NSUN2-206ENST00000506139 2619 ntAPPRIS ALT2 TSL 2 BASIC19.45■□□□□ 0.7
NPAS3Q8IXF0 TPD52-211ENST00000519303 1594 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
NPAS3Q8IXF0 MSANTD2-202ENST00000374979 2349 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
NPAS3Q8IXF0 CPT2-203ENST00000635862 2319 ntTSL 5 BASIC19.45■□□□□ 0.7
NPAS3Q8IXF0 SMIM10L2B-201ENST00000433425 2737 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
NPAS3Q8IXF0 TCEAL2-201ENST00000329035 1080 ntAPPRIS P1 TSL 5 BASIC19.45■□□□□ 0.7
NPAS3Q8IXF0 DUSP15-203ENST00000375966 1077 ntTSL 3 BASIC19.45■□□□□ 0.7
NPAS3Q8IXF0 CORT-201ENST00000377049 1130 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
NPAS3Q8IXF0 LINC01770-202ENST00000430109 510 ntTSL 3 BASIC19.45■□□□□ 0.7
NPAS3Q8IXF0 DRAXINP1-201ENST00000437611 948 ntBASIC19.45■□□□□ 0.7
NPAS3Q8IXF0 KRT17P6-201ENST00000453795 1220 ntBASIC19.45■□□□□ 0.7
NPAS3Q8IXF0 ZNF436-AS1-206ENST00000518821 461 ntTSL 2 BASIC19.45■□□□□ 0.7
NPAS3Q8IXF0 AC034238.1-212ENST00000596137 723 ntTSL 5 BASIC19.45■□□□□ 0.7
NPAS3Q8IXF0 AC008878.4-201ENST00000602083 293 ntTSL 5 BASIC19.45■□□□□ 0.7
NPAS3Q8IXF0 IFNL4P1-201ENST00000607083 540 ntBASIC19.45■□□□□ 0.7
NPAS3Q8IXF0 CLN3-259ENST00000637551 1083 ntTSL 5 BASIC19.45■□□□□ 0.7
NPAS3Q8IXF0 FUBP3-201ENST00000319725 3124 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
NPAS3Q8IXF0 MAP7D2-203ENST00000443379 2476 ntAPPRIS ALT2 TSL 2 BASIC19.45■□□□□ 0.7
NPAS3Q8IXF0 CABP1-201ENST00000288616 1369 ntAPPRIS P4 TSL 1 (best) BASIC19.44■□□□□ 0.7
NPAS3Q8IXF0 CLEC4G-201ENST00000328853 1360 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
NPAS3Q8IXF0 AP5S1-202ENST00000379567 1791 ntAPPRIS P1 TSL 2 BASIC19.44■□□□□ 0.7
NPAS3Q8IXF0 ACHE-204ENST00000412389 2218 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
NPAS3Q8IXF0 FUCA1-201ENST00000374479 2047 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
NPAS3Q8IXF0 ARID3C-201ENST00000378909 1411 ntAPPRIS P1 TSL 2 BASIC19.44■□□□□ 0.7
NPAS3Q8IXF0 FENDRR-203ENST00000595886 3095 ntTSL 2 BASIC19.44■□□□□ 0.7
NPAS3Q8IXF0 HDAC2-201ENST00000368632 2084 ntTSL 2 BASIC19.44■□□□□ 0.7
NPAS3Q8IXF0 C21orf58-205ENST00000397683 1674 ntAPPRIS ALT2 TSL 2 BASIC19.44■□□□□ 0.7
NPAS3Q8IXF0 TEX21P-204ENST00000641479 1693 ntBASIC19.44■□□□□ 0.7
NPAS3Q8IXF0 CHST1-201ENST00000308064 2718 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
NPAS3Q8IXF0 BICRA-204ENST00000614245 5697 ntAPPRIS ALT2 TSL 5 BASIC19.44■□□□□ 0.7
NPAS3Q8IXF0 TAF4-201ENST00000252996 4628 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
NPAS3Q8IXF0 MRPS15-201ENST00000373116 1006 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
NPAS3Q8IXF0 GGT1-204ENST00000401885 968 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
NPAS3Q8IXF0 CCNG1-208ENST00000510664 994 ntTSL 5 BASIC19.44■□□□□ 0.7
NPAS3Q8IXF0 CIB2-208ENST00000560618 804 ntTSL 2 BASIC19.44■□□□□ 0.7
NPAS3Q8IXF0 ZFPM1-205ENST00000569086 563 ntTSL 2 BASIC19.44■□□□□ 0.7
NPAS3Q8IXF0 ZNF554-204ENST00000591265 1148 ntTSL 5 BASIC19.44■□□□□ 0.7
NPAS3Q8IXF0 AC022150.1-201ENST00000599222 640 ntTSL 3 BASIC19.44■□□□□ 0.7
NPAS3Q8IXF0 AC010240.3-201ENST00000607688 395 ntBASIC19.44■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 31.9 ms