Protein–RNA interactions for Protein: Q7Z3B4

NUP54, Nucleoporin p54, humanhuman

Predictions only

Length 507 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54Q7Z3B4 CHCHD6-204ENST00000508789 1159 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
NUP54Q7Z3B4 AZIN1-AS1-215ENST00000522939 644 ntTSL 2 BASIC17.42■□□□□ 0.38
NUP54Q7Z3B4 BNIP3L-206ENST00000523515 915 ntTSL 2 BASIC17.42■□□□□ 0.38
NUP54Q7Z3B4 SIGLEC15-202ENST00000546268 1054 ntTSL 2 BASIC17.42■□□□□ 0.38
NUP54Q7Z3B4 AC015712.4-203ENST00000559673 630 ntTSL 3 BASIC17.42■□□□□ 0.38
NUP54Q7Z3B4 AL353719.1-201ENST00000566847 864 ntBASIC17.42■□□□□ 0.38
NUP54Q7Z3B4 AC006942.1-201ENST00000600669 520 ntTSL 2 BASIC17.42■□□□□ 0.38
NUP54Q7Z3B4 AL023803.3-201ENST00000615559 522 ntBASIC17.42■□□□□ 0.38
NUP54Q7Z3B4 MTFR1L-202ENST00000374301 2099 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
NUP54Q7Z3B4 VWA8-AS1-201ENST00000611103 2079 ntTSL 2 BASIC17.42■□□□□ 0.38
NUP54Q7Z3B4 RNF169-201ENST00000299563 7823 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
NUP54Q7Z3B4 MSL1-202ENST00000398532 4707 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
NUP54Q7Z3B4 SLC6A18-201ENST00000324642 2121 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
NUP54Q7Z3B4 HAUS4-217ENST00000555367 1454 ntTSL 5 BASIC17.42■□□□□ 0.38
NUP54Q7Z3B4 ADCY8-201ENST00000286355 5938 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
NUP54Q7Z3B4 SLC3A2-202ENST00000377889 1993 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
NUP54Q7Z3B4 TMEM191A-208ENST00000450925 1961 ntTSL 2 BASIC17.42■□□□□ 0.38
NUP54Q7Z3B4 KRT18P22-201ENST00000402024 1347 ntBASIC17.42■□□□□ 0.38
NUP54Q7Z3B4 ABCC5-204ENST00000392579 1848 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
NUP54Q7Z3B4 CNOT6-202ENST00000393356 6303 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
NUP54Q7Z3B4 AL691447.2-201ENST00000454869 2162 ntTSL 2 BASIC17.42■□□□□ 0.38
NUP54Q7Z3B4 PTOV1-AS1-201ENST00000596521 2155 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
NUP54Q7Z3B4 CMTM7-201ENST00000334983 2038 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
NUP54Q7Z3B4 PER3-203ENST00000377541 1524 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
NUP54Q7Z3B4 ATF5-201ENST00000423777 2069 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
NUP54Q7Z3B4 IKBKG-214ENST00000618670 2069 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
NUP54Q7Z3B4 DLK1-202ENST00000341267 4722 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
NUP54Q7Z3B4 P3H4-202ENST00000393928 2601 ntAPPRIS P2 TSL 1 (best) BASIC17.41■□□□□ 0.38
NUP54Q7Z3B4 C11orf80-214ENST00000532565 1948 ntAPPRIS ALT2 TSL 5 BASIC17.41■□□□□ 0.38
NUP54Q7Z3B4 FXYD6-211ENST00000539526 2132 ntAPPRIS P2 TSL 1 (best) BASIC17.41■□□□□ 0.38
NUP54Q7Z3B4 C15orf56-202ENST00000623360 2129 ntTSL 2 BASIC17.41■□□□□ 0.38
NUP54Q7Z3B4 THOC3-208ENST00000513482 1796 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
NUP54Q7Z3B4 KRT8P3-201ENST00000519669 1449 ntBASIC17.41■□□□□ 0.38
NUP54Q7Z3B4 AGAP2-201ENST00000257897 5388 ntAPPRIS P3 TSL 1 (best) BASIC17.41■□□□□ 0.38
NUP54Q7Z3B4 CYB561D2-204ENST00000424512 1212 ntAPPRIS P1 TSL 5 BASIC17.41■□□□□ 0.38
NUP54Q7Z3B4 AC108025.1-201ENST00000453678 1058 ntTSL 5 BASIC17.41■□□□□ 0.38
NUP54Q7Z3B4 ARL16-209ENST00000573715 763 ntTSL 3 BASIC17.41■□□□□ 0.38
NUP54Q7Z3B4 ARL16-211ENST00000576135 694 ntTSL 3 BASIC17.41■□□□□ 0.38
NUP54Q7Z3B4 ZNF134-203ENST00000600344 483 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
NUP54Q7Z3B4 AC145285.6-201ENST00000604632 637 ntBASIC17.41■□□□□ 0.38
NUP54Q7Z3B4 LINC01023-201ENST00000606054 436 ntBASIC17.41■□□□□ 0.38
NUP54Q7Z3B4 AC097493.4-201ENST00000641197 219 ntBASIC17.41■□□□□ 0.38
NUP54Q7Z3B4 CRKL-201ENST00000354336 5325 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
NUP54Q7Z3B4 TFDP2-202ENST00000467072 1853 ntAPPRIS P3 TSL 1 (best) BASIC17.41■□□□□ 0.38
NUP54Q7Z3B4 MLLT1-201ENST00000252674 4507 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
NUP54Q7Z3B4 PDCD10-201ENST00000392750 2067 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
NUP54Q7Z3B4 DMRT2-204ENST00000382251 2292 ntAPPRIS P1 TSL 5 BASIC17.41■□□□□ 0.38
NUP54Q7Z3B4 DMRT2-201ENST00000259622 2459 ntTSL 2 BASIC17.41■□□□□ 0.38
NUP54Q7Z3B4 BRAF-201ENST00000288602 2480 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
NUP54Q7Z3B4 NKD2-201ENST00000274150 1940 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
NUP54Q7Z3B4 LCORL-201ENST00000326877 5604 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
NUP54Q7Z3B4 CDK17-203ENST00000543119 2442 ntTSL 2 BASIC17.4■□□□□ 0.38
NUP54Q7Z3B4 IFNLR1-202ENST00000327575 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
NUP54Q7Z3B4 CENPA-202ENST00000335756 1452 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
NUP54Q7Z3B4 VKORC1-202ENST00000319788 1077 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
NUP54Q7Z3B4 ING1-202ENST00000338450 1189 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
NUP54Q7Z3B4 RAB2A-211ENST00000531289 1058 ntTSL 2 BASIC17.4■□□□□ 0.38
NUP54Q7Z3B4 PRR29-205ENST00000579184 1052 ntAPPRIS ALT2 TSL 2 BASIC17.4■□□□□ 0.38
NUP54Q7Z3B4 RAB11B-AS1-201ENST00000593581 1013 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
NUP54Q7Z3B4 AC012306.2-201ENST00000609350 630 ntBASIC17.4■□□□□ 0.38
NUP54Q7Z3B4 AC010653.2-201ENST00000623505 997 ntBASIC17.4■□□□□ 0.38
NUP54Q7Z3B4 CLN6-221ENST00000637494 765 ntTSL 5 BASIC17.4■□□□□ 0.38
NUP54Q7Z3B4 SRMS-201ENST00000217188 1516 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
NUP54Q7Z3B4 ZHX3-212ENST00000558993 1528 ntTSL 5 BASIC17.4■□□□□ 0.38
NUP54Q7Z3B4 TMEM132A-202ENST00000453848 3346 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
NUP54Q7Z3B4 SAMD11-211ENST00000616125 2230 ntAPPRIS ALT2 TSL 5 BASIC17.4■□□□□ 0.38
NUP54Q7Z3B4 CHRNA4-201ENST00000370263 5577 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
NUP54Q7Z3B4 CPEB2-202ENST00000345451 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
NUP54Q7Z3B4 TRMT2A-203ENST00000404751 2498 ntAPPRIS ALT2 TSL 2 BASIC17.4■□□□□ 0.38
NUP54Q7Z3B4 NAB2-201ENST00000300131 2711 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
NUP54Q7Z3B4 CLSTN1-202ENST00000377298 5221 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
NUP54Q7Z3B4 P2RY6-203ENST00000393591 1829 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
NUP54Q7Z3B4 PAFAH1B2-202ENST00000419197 2517 ntTSL 2 BASIC17.4■□□□□ 0.38
NUP54Q7Z3B4 PSMG4-209ENST00000473000 4603 ntTSL 2 BASIC17.4■□□□□ 0.38
NUP54Q7Z3B4 TNFRSF19-202ENST00000382258 1625 ntAPPRIS P4 TSL 1 (best) BASIC17.39■□□□□ 0.38
NUP54Q7Z3B4 NAPRT-203ENST00000435154 1877 ntTSL 2 BASIC17.39■□□□□ 0.38
NUP54Q7Z3B4 GCGR-202ENST00000570996 1872 ntAPPRIS ALT2 TSL 2 BASIC17.39■□□□□ 0.38
NUP54Q7Z3B4 MAPK8IP1-201ENST00000241014 3050 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.38
NUP54Q7Z3B4 AC092338.2-201ENST00000568827 1415 ntBASIC17.39■□□□□ 0.38
NUP54Q7Z3B4 ATXN2-227ENST00000616825 4575 ntAPPRIS ALT2 TSL 5 BASIC17.39■□□□□ 0.37
NUP54Q7Z3B4 BTBD1-202ENST00000379403 1467 ntTSL 5 BASIC17.39■□□□□ 0.37
NUP54Q7Z3B4 CD55-201ENST00000314754 2220 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.37
NUP54Q7Z3B4 PDZD7-201ENST00000370215 2032 ntTSL 2 BASIC17.39■□□□□ 0.37
NUP54Q7Z3B4 TMIGD2-201ENST00000301272 1262 ntAPPRIS P3 TSL 1 (best) BASIC17.39■□□□□ 0.37
NUP54Q7Z3B4 IFI6-201ENST00000339145 822 ntAPPRIS P4 TSL 2 BASIC17.39■□□□□ 0.37
NUP54Q7Z3B4 TMEM240-201ENST00000378733 718 ntAPPRIS P1 TSL 2 BASIC17.39■□□□□ 0.37
NUP54Q7Z3B4 SHBG-203ENST00000416273 1042 ntAPPRIS ALT2 TSL 3 BASIC17.39■□□□□ 0.37
NUP54Q7Z3B4 DLEU2-203ENST00000425586 1267 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
NUP54Q7Z3B4 ZNF534-203ENST00000432303 956 ntTSL 2 BASIC17.39■□□□□ 0.37
NUP54Q7Z3B4 SPAG16-207ENST00000432529 1250 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
NUP54Q7Z3B4 LY6E-211ENST00000521699 1256 ntAPPRIS P2 TSL 5 BASIC17.39■□□□□ 0.37
NUP54Q7Z3B4 CBLN1-202ENST00000536749 718 ntAPPRIS P1 TSL 5 BASIC17.39■□□□□ 0.37
NUP54Q7Z3B4 SHBG-215ENST00000575903 1196 ntTSL 3 BASIC17.39■□□□□ 0.37
NUP54Q7Z3B4 SLC39A11-207ENST00000579732 1004 ntTSL 2 BASIC17.39■□□□□ 0.37
NUP54Q7Z3B4 AC008735.6-201ENST00000635964 1292 ntAPPRIS P1 TSL 2 BASIC17.39■□□□□ 0.37
NUP54Q7Z3B4 AL590627.2-201ENST00000637510 144 ntTSL 5 BASIC17.39■□□□□ 0.37
NUP54Q7Z3B4 COL13A1-205ENST00000398978 3093 ntAPPRIS P4 TSL 5 BASIC17.39■□□□□ 0.37
NUP54Q7Z3B4 REEP2-201ENST00000254901 2099 ntAPPRIS P3 TSL 1 (best) BASIC17.39■□□□□ 0.37
NUP54Q7Z3B4 BICRA-201ENST00000396720 5739 ntAPPRIS P2 TSL 5 BASIC17.39■□□□□ 0.37
NUP54Q7Z3B4 ABHD14B-202ENST00000361143 1636 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 29.8 ms