Protein–RNA interactions for Protein: Q5TC82

RC3H1, Roquin-1, humanhuman

Known RBP Predictions only

Length 1,133 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RC3H1Q5TC82 RPL3-201ENST00000216146 1442 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.38
RC3H1Q5TC82 BACE1-204ENST00000445823 1408 ntTSL 1 (best) BASIC23.7■■□□□ 1.38
RC3H1Q5TC82 TDRD10-202ENST00000368482 2331 ntAPPRIS P3 TSL 1 (best) BASIC23.7■■□□□ 1.38
RC3H1Q5TC82 RBPMS-203ENST00000339877 1341 ntAPPRIS ALT1 TSL 1 (best) BASIC23.7■■□□□ 1.38
RC3H1Q5TC82 NDUFB9-201ENST00000276689 711 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.38
RC3H1Q5TC82 BEX4-201ENST00000372691 1066 ntAPPRIS P1 TSL 2 BASIC23.7■■□□□ 1.38
RC3H1Q5TC82 RPL8-202ENST00000394920 965 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.38
RC3H1Q5TC82 AC092159.3-201ENST00000439196 571 ntTSL 4 BASIC23.7■■□□□ 1.38
RC3H1Q5TC82 PRSS21-202ENST00000450020 1106 ntTSL 1 (best) BASIC23.7■■□□□ 1.38
RC3H1Q5TC82 VENTXP7-201ENST00000475503 772 ntBASIC23.7■■□□□ 1.38
RC3H1Q5TC82 MIR130B-201ENST00000498589 1093 ntTSL 5 BASIC23.7■■□□□ 1.38
RC3H1Q5TC82 FOXP3-205ENST00000518685 1213 ntTSL 1 (best) BASIC23.7■■□□□ 1.38
RC3H1Q5TC82 NAT14-202ENST00000587400 416 ntTSL 5 BASIC23.7■■□□□ 1.38
RC3H1Q5TC82 AC011455.1-201ENST00000593830 504 ntTSL 3 BASIC23.7■■□□□ 1.38
RC3H1Q5TC82 CDC25B-202ENST00000340833 1978 ntAPPRIS ALT2 TSL 1 (best) BASIC23.7■■□□□ 1.38
RC3H1Q5TC82 WNT10B-202ENST00000403957 1817 ntTSL 5 BASIC23.7■■□□□ 1.38
RC3H1Q5TC82 CFP-203ENST00000396992 1592 ntAPPRIS P2 TSL 1 (best) BASIC23.69■■□□□ 1.38
RC3H1Q5TC82 ALG9-215ENST00000616540 2069 ntTSL 1 (best) BASIC23.69■■□□□ 1.38
RC3H1Q5TC82 TPSD1-201ENST00000211076 1499 ntAPPRIS P2 TSL 1 (best) BASIC23.69■■□□□ 1.38
RC3H1Q5TC82 NFS1-204ENST00000397425 1956 ntTSL 5 BASIC23.69■■□□□ 1.38
RC3H1Q5TC82 BEAN1-202ENST00000536005 1988 ntTSL 1 (best) BASIC23.69■■□□□ 1.38
RC3H1Q5TC82 TRMU-201ENST00000290846 1940 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
RC3H1Q5TC82 ARMC12-202ENST00000373866 1254 ntAPPRIS P1 TSL 3 BASIC23.69■■□□□ 1.38
RC3H1Q5TC82 ROMO1-204ENST00000374078 498 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
RC3H1Q5TC82 FIGNL1-207ENST00000435566 593 ntTSL 4 BASIC23.69■■□□□ 1.38
RC3H1Q5TC82 NECTIN3-AS1-204ENST00000476301 568 ntTSL 4 BASIC23.69■■□□□ 1.38
RC3H1Q5TC82 AC091607.1-201ENST00000490318 1060 ntBASIC23.69■■□□□ 1.38
RC3H1Q5TC82 NDUFB9-204ENST00000518008 789 ntTSL 2 BASIC23.69■■□□□ 1.38
RC3H1Q5TC82 REEP1-209ENST00000541910 969 ntTSL 2 BASIC23.69■■□□□ 1.38
RC3H1Q5TC82 ANAPC11-204ENST00000571024 668 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
RC3H1Q5TC82 ANAPC11-218ENST00000582222 523 ntTSL 2 BASIC23.69■■□□□ 1.38
RC3H1Q5TC82 AC104532.1-201ENST00000588891 580 ntAPPRIS P1 TSL 4 BASIC23.69■■□□□ 1.38
RC3H1Q5TC82 AC011511.2-201ENST00000592893 918 ntTSL 3 BASIC23.69■■□□□ 1.38
RC3H1Q5TC82 CD177-202ENST00000607855 536 ntTSL 1 (best) BASIC23.69■■□□□ 1.38
RC3H1Q5TC82 TP73-AS1-207ENST00000624167 988 ntBASIC23.69■■□□□ 1.38
RC3H1Q5TC82 RIIAD1-201ENST00000326413 1772 ntTSL 2 BASIC23.69■■□□□ 1.38
RC3H1Q5TC82 DOK7-206ENST00000515886 2263 ntTSL 2 BASIC23.69■■□□□ 1.38
RC3H1Q5TC82 SPHK1-203ENST00000545180 2238 ntAPPRIS P3 TSL 2 BASIC23.69■■□□□ 1.38
RC3H1Q5TC82 BOK-201ENST00000318407 2657 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
RC3H1Q5TC82 DLEU7-201ENST00000400393 2092 ntAPPRIS P3 TSL 1 (best) BASIC23.69■■□□□ 1.38
RC3H1Q5TC82 HAND2-AS1-237ENST00000616485 2420 ntTSL 2 BASIC23.69■■□□□ 1.38
RC3H1Q5TC82 CYP51A1P1-201ENST00000492267 1507 ntBASIC23.69■■□□□ 1.38
RC3H1Q5TC82 EXOSC3-201ENST00000327304 1806 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
RC3H1Q5TC82 KIF22-203ENST00000561482 2505 ntTSL 2 BASIC23.68■■□□□ 1.38
RC3H1Q5TC82 DNAJC1-202ENST00000376980 2106 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
RC3H1Q5TC82 CD320-201ENST00000301458 1250 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
RC3H1Q5TC82 CELA2A-201ENST00000359621 919 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
RC3H1Q5TC82 SYS1-202ENST00000372727 813 ntAPPRIS P1 TSL 3 BASIC23.68■■□□□ 1.38
RC3H1Q5TC82 MIR574-201ENST00000385209 96 ntBASIC23.68■■□□□ 1.38
RC3H1Q5TC82 POM121L3P-201ENST00000419331 1163 ntBASIC23.68■■□□□ 1.38
RC3H1Q5TC82 PMS2P1-201ENST00000431037 1228 ntBASIC23.68■■□□□ 1.38
RC3H1Q5TC82 ABR-217ENST00000572441 563 ntTSL 4 BASIC23.68■■□□□ 1.38
RC3H1Q5TC82 PTPN11-207ENST00000639857 801 ntTSL 5 BASIC23.68■■□□□ 1.38
RC3H1Q5TC82 AF228730.7-201ENST00000641842 219 ntBASIC23.68■■□□□ 1.38
RC3H1Q5TC82 MBIP-203ENST00000416007 1648 ntAPPRIS P3 TSL 1 (best) BASIC23.68■■□□□ 1.38
RC3H1Q5TC82 CRIM1-201ENST00000280527 5912 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
RC3H1Q5TC82 ACAP3-201ENST00000353662 2280 ntTSL 1 (best) BASIC23.68■■□□□ 1.38
RC3H1Q5TC82 CTNNBL1-201ENST00000361383 1925 ntAPPRIS P2 TSL 1 (best) BASIC23.68■■□□□ 1.38
RC3H1Q5TC82 APLP1-203ENST00000586861 2052 ntTSL 2 BASIC23.68■■□□□ 1.38
RC3H1Q5TC82 AL353692.3-201ENST00000407031 1396 ntBASIC23.67■■□□□ 1.38
RC3H1Q5TC82 PRPSAP2-201ENST00000268835 1910 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
RC3H1Q5TC82 PITHD1-201ENST00000246151 1603 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
RC3H1Q5TC82 GBX2-203ENST00000551105 1307 ntTSL 1 (best) BASIC23.67■■□□□ 1.38
RC3H1Q5TC82 TYMS-202ENST00000323250 693 ntTSL 1 (best) BASIC23.67■■□□□ 1.38
RC3H1Q5TC82 DARS-AS1-202ENST00000419808 772 ntTSL 5 BASIC23.67■■□□□ 1.38
RC3H1Q5TC82 PLXND1-205ENST00000504689 546 ntTSL 3 BASIC23.67■■□□□ 1.38
RC3H1Q5TC82 C1QB-203ENST00000509305 1254 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
RC3H1Q5TC82 ZBP1-208ENST00000541799 1041 ntAPPRIS ALT2 TSL 5 BASIC23.67■■□□□ 1.38
RC3H1Q5TC82 AP001005.1-201ENST00000571755 1248 ntBASIC23.67■■□□□ 1.38
RC3H1Q5TC82 FCGRT-210ENST00000596975 1054 ntTSL 5 BASIC23.67■■□□□ 1.38
RC3H1Q5TC82 BAALC-205ENST00000438105 2662 ntTSL 1 (best) BASIC23.67■■□□□ 1.38
RC3H1Q5TC82 P4HB-201ENST00000331483 2603 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
RC3H1Q5TC82 KCNQ5-213ENST00000629977 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC23.67■■□□□ 1.38
RC3H1Q5TC82 FEM1AP3-201ENST00000403722 1741 ntBASIC23.67■■□□□ 1.38
RC3H1Q5TC82 MAFF-204ENST00000426621 2216 ntAPPRIS P1 TSL 4 BASIC23.67■■□□□ 1.38
RC3H1Q5TC82 BRICD5-201ENST00000328540 1913 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
RC3H1Q5TC82 KLRG2-201ENST00000340940 2197 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
RC3H1Q5TC82 NUDT16-201ENST00000502852 1552 ntTSL 2 BASIC23.66■■□□□ 1.38
RC3H1Q5TC82 SLC25A41-201ENST00000321510 1532 ntAPPRIS P1 TSL 5 BASIC23.66■■□□□ 1.38
RC3H1Q5TC82 PTRHD1-201ENST00000328379 1105 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
RC3H1Q5TC82 S100A3-201ENST00000368712 579 ntAPPRIS P1 TSL 3 BASIC23.66■■□□□ 1.38
RC3H1Q5TC82 PAX3-208ENST00000409828 1254 ntTSL 1 (best) BASIC23.66■■□□□ 1.38
RC3H1Q5TC82 TP53TG1-202ENST00000416560 710 ntTSL 1 (best) BASIC23.66■■□□□ 1.38
RC3H1Q5TC82 CT47A11-201ENST00000457020 1294 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
RC3H1Q5TC82 AC034213.1-201ENST00000507681 806 ntTSL 3 BASIC23.66■■□□□ 1.38
RC3H1Q5TC82 AP001453.1-201ENST00000534988 923 ntTSL 3 BASIC23.66■■□□□ 1.38
RC3H1Q5TC82 AC016876.1-204ENST00000573187 679 ntTSL 3 BASIC23.66■■□□□ 1.38
RC3H1Q5TC82 AC139530.3-201ENST00000620344 690 ntBASIC23.66■■□□□ 1.38
RC3H1Q5TC82 TST-204ENST00000622841 1105 ntAPPRIS P1 TSL 5 BASIC23.66■■□□□ 1.38
RC3H1Q5TC82 NR2F1-205ENST00000615873 1427 ntTSL 1 (best) BASIC23.66■■□□□ 1.38
RC3H1Q5TC82 DNAJA4-202ENST00000394852 3116 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
RC3H1Q5TC82 LINC01140-202ENST00000467438 2375 ntTSL 2 BASIC23.65■■□□□ 1.38
RC3H1Q5TC82 AP000662.2-202ENST00000530595 2790 ntTSL 2 BASIC23.65■■□□□ 1.38
RC3H1Q5TC82 IL9RP2-201ENST00000423948 1312 ntBASIC23.65■■□□□ 1.38
RC3H1Q5TC82 WFDC1-203ENST00000568638 1319 ntAPPRIS P1 TSL 2 BASIC23.65■■□□□ 1.38
RC3H1Q5TC82 TMC7-205ENST00000569532 2738 ntTSL 2 BASIC23.65■■□□□ 1.38
RC3H1Q5TC82 GAS2-202ENST00000454584 2286 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
RC3H1Q5TC82 AP000679.1-202ENST00000319763 2081 ntTSL 1 (best) BASIC23.65■■□□□ 1.38
RC3H1Q5TC82 AC114490.1-202ENST00000311990 1887 ntTSL 1 (best) BASIC23.65■■□□□ 1.38
RC3H1Q5TC82 SETMAR-206ENST00000430981 1671 ntTSL 1 (best) BASIC23.65■■□□□ 1.38
Retrieved 100 of 98,524 protein–RNA pairs in 24.7 ms