Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 RNF165-205ENST00000588679 2904 ntBASIC19.11■□□□□ 0.65
USP39Q53GS9 DEDD2-204ENST00000595337 1894 ntAPPRIS P3 TSL 3 BASIC19.11■□□□□ 0.65
USP39Q53GS9 AL035252.2-201ENST00000454676 3168 ntTSL 2 BASIC19.11■□□□□ 0.65
USP39Q53GS9 CFP-201ENST00000247153 1713 ntAPPRIS P2 TSL 5 BASIC19.11■□□□□ 0.65
USP39Q53GS9 RAB28-202ENST00000330852 1715 ntAPPRIS ALT1 TSL 1 (best) BASIC19.11■□□□□ 0.65
USP39Q53GS9 CDC42EP1-201ENST00000249014 2181 ntAPPRIS P2 TSL 1 (best) BASIC19.1■□□□□ 0.65
USP39Q53GS9 GNAI1-201ENST00000351004 3347 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
USP39Q53GS9 B4GALT2-201ENST00000309519 2004 ntTSL 2 BASIC19.1■□□□□ 0.65
USP39Q53GS9 SPATA6L-207ENST00000475086 1444 ntAPPRIS P1 TSL 2 BASIC19.1■□□□□ 0.65
USP39Q53GS9 TAF5L-201ENST00000258281 3112 ntAPPRIS P1 TSL 5 BASIC19.1■□□□□ 0.65
USP39Q53GS9 SYTL1-201ENST00000318074 1900 ntTSL 2 BASIC19.1■□□□□ 0.65
USP39Q53GS9 STXBP2-203ENST00000441779 1914 ntTSL 2 BASIC19.1■□□□□ 0.65
USP39Q53GS9 AGPAT2-205ENST00000538402 1357 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
USP39Q53GS9 SSR1-204ENST00000474597 1808 ntTSL 5 BASIC19.1■□□□□ 0.65
USP39Q53GS9 INS-201ENST00000250971 503 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
USP39Q53GS9 CENPX-201ENST00000306704 751 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
USP39Q53GS9 ZFAND2A-201ENST00000316495 860 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
USP39Q53GS9 MRPL43-205ENST00000370234 798 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
USP39Q53GS9 PDLIM4-202ENST00000379018 1006 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
USP39Q53GS9 DHRS4-203ENST00000397075 727 ntTSL 2 BASIC19.1■□□□□ 0.65
USP39Q53GS9 MPG-203ENST00000397817 1039 ntAPPRIS ALT2 TSL 2 BASIC19.1■□□□□ 0.65
USP39Q53GS9 ZFAND2A-203ENST00000401903 968 ntTSL 3 BASIC19.1■□□□□ 0.65
USP39Q53GS9 SPDYE15P-201ENST00000424157 909 ntBASIC19.1■□□□□ 0.65
USP39Q53GS9 AC034232.1-201ENST00000506026 1064 ntBASIC19.1■□□□□ 0.65
USP39Q53GS9 AC004448.5-201ENST00000579897 567 ntTSL 5 BASIC19.1■□□□□ 0.65
USP39Q53GS9 AL158151.3-201ENST00000599172 696 ntTSL 5 BASIC19.1■□□□□ 0.65
USP39Q53GS9 PDE9A-213ENST00000398236 1776 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
USP39Q53GS9 TREX1-205ENST00000625293 1783 ntBASIC19.1■□□□□ 0.65
USP39Q53GS9 SPAST-203ENST00000615843 5212 ntAPPRIS P4 TSL 1 (best) BASIC19.1■□□□□ 0.65
USP39Q53GS9 PML-204ENST00000359928 1726 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
USP39Q53GS9 KTI12-201ENST00000371614 1714 ntAPPRIS P1 BASIC19.1■□□□□ 0.65
USP39Q53GS9 NKX6-1-201ENST00000295886 2628 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
USP39Q53GS9 GAL3ST1-206ENST00000406955 1635 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
USP39Q53GS9 ANKRD9-201ENST00000286918 6727 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
USP39Q53GS9 IMPAD1-201ENST00000262644 7199 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
USP39Q53GS9 FAM76B-204ENST00000536839 2546 ntAPPRIS ALT1 TSL 5 BASIC19.1■□□□□ 0.65
USP39Q53GS9 UCHL5-202ENST00000367449 1507 ntAPPRIS ALT1 TSL 1 (best) BASIC19.1■□□□□ 0.65
USP39Q53GS9 NEU4-201ENST00000325935 2288 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
USP39Q53GS9 ANKS1A-201ENST00000360359 6347 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
USP39Q53GS9 COL13A1-201ENST00000354547 3027 ntAPPRIS ALT2 TSL 5 BASIC19.09■□□□□ 0.65
USP39Q53GS9 E4F1-201ENST00000301727 2573 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
USP39Q53GS9 GPR62-201ENST00000322241 2191 ntAPPRIS P1 BASIC19.09■□□□□ 0.65
USP39Q53GS9 INPP5J-203ENST00000401755 1751 ntTSL 2 BASIC19.09■□□□□ 0.65
USP39Q53GS9 TTC34-201ENST00000401095 8814 ntAPPRIS ALT2 TSL 5 BASIC19.09■□□□□ 0.65
USP39Q53GS9 ZACN-201ENST00000334586 1335 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
USP39Q53GS9 POLI-202ENST00000406285 2030 ntTSL 2 BASIC19.09■□□□□ 0.65
USP39Q53GS9 SHROOM1-202ENST00000378676 2352 ntAPPRIS ALT2 TSL 5 BASIC19.09■□□□□ 0.65
USP39Q53GS9 DCTN3-201ENST00000259632 808 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
USP39Q53GS9 TBC1D7-202ENST00000356436 1116 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
USP39Q53GS9 TBC1D7-204ENST00000379300 1276 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
USP39Q53GS9 LBX1-AS1-203ENST00000454527 740 ntTSL 5 BASIC19.09■□□□□ 0.65
USP39Q53GS9 HOXB8-203ENST00000576562 743 ntAPPRIS ALT1 TSL 2 BASIC19.09■□□□□ 0.65
USP39Q53GS9 C1QTNF1-205ENST00000578229 1294 ntTSL 4 BASIC19.09■□□□□ 0.65
USP39Q53GS9 CHMP2A-208ENST00000601220 885 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
USP39Q53GS9 IRF5-214ENST00000613821 595 ntTSL 5 BASIC19.09■□□□□ 0.65
USP39Q53GS9 AC012313.10-201ENST00000623509 926 ntBASIC19.09■□□□□ 0.65
USP39Q53GS9 SMIM29-209ENST00000636500 1186 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
USP39Q53GS9 TFEB-211ENST00000420312 1996 ntTSL 5 BASIC19.09■□□□□ 0.65
USP39Q53GS9 WIPI1-202ENST00000546360 1575 ntTSL 2 BASIC19.09■□□□□ 0.65
USP39Q53GS9 ARHGAP23-222ENST00000622683 5964 ntAPPRIS P2 TSL 5 BASIC19.09■□□□□ 0.65
USP39Q53GS9 GRM5-202ENST00000305447 4571 ntAPPRIS ALT2 TSL 1 (best) BASIC19.09■□□□□ 0.65
USP39Q53GS9 HAUS4-217ENST00000555367 1454 ntTSL 5 BASIC19.09■□□□□ 0.65
USP39Q53GS9 CERS4-201ENST00000251363 1797 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
USP39Q53GS9 ZNF281-202ENST00000367352 2933 ntAPPRIS ALT2 TSL 2 BASIC19.08■□□□□ 0.65
USP39Q53GS9 KCNH1-214ENST00000640566 1365 ntTSL 1 (best) BASIC19.08■□□□□ 0.65
USP39Q53GS9 FAM129C-201ENST00000332386 2222 ntAPPRIS ALT2 TSL 1 (best) BASIC19.08■□□□□ 0.65
USP39Q53GS9 RUVBL2-211ENST00000601968 1641 ntTSL 5 BASIC19.08■□□□□ 0.65
USP39Q53GS9 FAM216A-201ENST00000377673 1582 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
USP39Q53GS9 AC009237.14-201ENST00000609975 1594 ntBASIC19.08■□□□□ 0.65
USP39Q53GS9 EFCAB2-203ENST00000366523 1233 ntAPPRIS P1 TSL 3 BASIC19.08■□□□□ 0.64
USP39Q53GS9 SUMF2-203ENST00000395435 1287 ntTSL 2 BASIC19.08■□□□□ 0.64
USP39Q53GS9 EMC9-202ENST00000419198 953 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
USP39Q53GS9 IFT27-205ENST00000433985 1095 ntAPPRIS ALT1 TSL 1 (best) BASIC19.08■□□□□ 0.64
USP39Q53GS9 CNEP1R1-203ENST00000458059 2965 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
USP39Q53GS9 LINC00599-204ENST00000521242 716 ntTSL 3 BASIC19.08■□□□□ 0.64
USP39Q53GS9 MIR3652-201ENST00000579335 131 ntBASIC19.08■□□□□ 0.64
USP39Q53GS9 FGFR1-203ENST00000341462 6054 ntTSL 5 BASIC19.08■□□□□ 0.64
USP39Q53GS9 STMN3-201ENST00000370053 2255 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
USP39Q53GS9 VSTM2A-203ENST00000404951 2521 ntTSL 5 BASIC19.08■□□□□ 0.64
USP39Q53GS9 ERVK13-1-203ENST00000564340 1449 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
USP39Q53GS9 UNC5B-201ENST00000335350 6841 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
USP39Q53GS9 GTF3C5-201ENST00000342018 1905 ntTSL 5 BASIC19.08■□□□□ 0.64
USP39Q53GS9 RCCD1-201ENST00000394258 2689 ntAPPRIS P2 TSL 1 (best) BASIC19.08■□□□□ 0.64
USP39Q53GS9 TAX1BP3-201ENST00000225525 1377 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
USP39Q53GS9 CCDC34-202ENST00000328697 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC19.07■□□□□ 0.64
USP39Q53GS9 SLC38A11-203ENST00000409149 1621 ntAPPRIS P2 TSL 2 BASIC19.07■□□□□ 0.64
USP39Q53GS9 SCO1-203ENST00000577427 1601 ntTSL 3 BASIC19.07■□□□□ 0.64
USP39Q53GS9 CASKIN2-205ENST00000581870 1612 ntTSL 2 BASIC19.07■□□□□ 0.64
USP39Q53GS9 MFSD1-219ENST00000622669 2361 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
USP39Q53GS9 PHF12-202ENST00000332830 4759 ntAPPRIS P1 TSL 2 BASIC19.07■□□□□ 0.64
USP39Q53GS9 TRPM4-213ENST00000599628 1829 ntTSL 2 BASIC19.07■□□□□ 0.64
USP39Q53GS9 AMDHD1-201ENST00000266736 2260 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
USP39Q53GS9 HOXA11-201ENST00000006015 2295 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
USP39Q53GS9 NSMF-206ENST00000371475 2987 ntAPPRIS ALT1 TSL 1 (best) BASIC19.07■□□□□ 0.64
USP39Q53GS9 RELB-202ENST00000505236 2219 ntAPPRIS ALT2 TSL 5 BASIC19.07■□□□□ 0.64
USP39Q53GS9 S100A14-201ENST00000344616 1058 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
USP39Q53GS9 HBZP1-201ENST00000354915 429 ntBASIC19.07■□□□□ 0.64
USP39Q53GS9 RPUSD3-201ENST00000383820 1225 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
USP39Q53GS9 PLAC8-202ENST00000411416 786 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
USP39Q53GS9 AL603832.1-201ENST00000421943 449 ntTSL 5 BASIC19.07■□□□□ 0.64
Retrieved 100 of 98,524 protein–RNA pairs in 35.1 ms