Protein–RNA interactions for Protein: P78363

ABCA4, Retinal-specific ATP-binding cassette transporter, humanhuman

Predictions only

Length 2,273 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA4P78363 TEX13A-201ENST00000600991 1377 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
ABCA4P78363 RELT-202ENST00000393580 2669 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
ABCA4P78363 KRT13-202ENST00000336861 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
ABCA4P78363 ZNF688-201ENST00000223459 2506 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
ABCA4P78363 GAREM2-201ENST00000401533 4161 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
ABCA4P78363 AC002310.5-201ENST00000569360 1515 ntAPPRIS P1 TSL 2 BASIC16.17■□□□□ 0.18
ABCA4P78363 AL391807.1-203ENST00000604392 2365 ntBASIC16.17■□□□□ 0.18
ABCA4P78363 TMEM89-201ENST00000330862 662 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
ABCA4P78363 TRAPPC3-202ENST00000373162 1056 ntTSL 2 BASIC16.17■□□□□ 0.18
ABCA4P78363 CAPG-203ENST00000409670 1183 ntAPPRIS P1 TSL 5 BASIC16.17■□□□□ 0.18
ABCA4P78363 AC069368.1-202ENST00000437723 750 ntAPPRIS P1 TSL 5 BASIC16.17■□□□□ 0.18
ABCA4P78363 AC105202.1-201ENST00000517833 995 ntTSL 3 BASIC16.17■□□□□ 0.18
ABCA4P78363 NAPSB-203ENST00000531692 561 ntTSL 2 BASIC16.17■□□□□ 0.18
ABCA4P78363 CLDN7-204ENST00000571881 735 ntTSL 3 BASIC16.17■□□□□ 0.18
ABCA4P78363 AC011498.5-201ENST00000592027 486 ntBASIC16.17■□□□□ 0.18
ABCA4P78363 IGFLR1-209ENST00000592537 1195 ntAPPRIS P2 TSL 1 (best) BASIC16.17■□□□□ 0.18
ABCA4P78363 AC093525.10-201ENST00000625130 1569 ntBASIC16.17■□□□□ 0.18
ABCA4P78363 TRMT6-202ENST00000453074 2239 ntTSL 2 BASIC16.17■□□□□ 0.18
ABCA4P78363 CTDP1-208ENST00000613122 5866 ntAPPRIS P3 TSL 1 (best) BASIC16.17■□□□□ 0.18
ABCA4P78363 DGKZ-203ENST00000421244 2862 ntAPPRIS ALT2 TSL 1 (best) BASIC16.17■□□□□ 0.18
ABCA4P78363 DVL3-203ENST00000431765 2294 ntTSL 5 BASIC16.17■□□□□ 0.18
ABCA4P78363 KCNK4-205ENST00000538767 1389 ntTSL 2 BASIC16.17■□□□□ 0.18
ABCA4P78363 AC007040.2-201ENST00000606025 4170 ntAPPRIS P1 TSL 5 BASIC16.17■□□□□ 0.18
ABCA4P78363 ACVR1C-201ENST00000243349 8994 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
ABCA4P78363 FBLN1-204ENST00000402984 2355 ntTSL 5 BASIC16.17■□□□□ 0.18
ABCA4P78363 HCG18-235ENST00000426882 4862 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
ABCA4P78363 MRPL2-202ENST00000388752 1588 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
ABCA4P78363 C21orf91-203ENST00000400559 1593 ntAPPRIS ALT1 TSL 5 BASIC16.17■□□□□ 0.18
ABCA4P78363 BUB3-202ENST00000368859 667 ntTSL 3 BASIC16.17■□□□□ 0.18
ABCA4P78363 LINC01315-202ENST00000424852 1142 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
ABCA4P78363 TSPY22P-201ENST00000427496 604 ntBASIC16.17■□□□□ 0.18
ABCA4P78363 PHGR1-201ENST00000448599 436 ntAPPRIS P1 TSL 5 BASIC16.17■□□□□ 0.18
ABCA4P78363 MRPL52-215ENST00000556840 398 ntTSL 2 BASIC16.17■□□□□ 0.18
ABCA4P78363 TK1-205ENST00000590862 642 ntTSL 3 BASIC16.17■□□□□ 0.18
ABCA4P78363 AC104692.2-201ENST00000603054 253 ntBASIC16.17■□□□□ 0.18
ABCA4P78363 CHMP4A-211ENST00000609024 735 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
ABCA4P78363 AC092119.3-201ENST00000612618 583 ntBASIC16.17■□□□□ 0.18
ABCA4P78363 AL158151.1-201ENST00000372490 2047 ntTSL 2 BASIC16.17■□□□□ 0.18
ABCA4P78363 FRRS1L-201ENST00000561981 8197 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
ABCA4P78363 KCNK4-207ENST00000539216 1723 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
ABCA4P78363 GSX2-201ENST00000326902 1812 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
ABCA4P78363 PDLIM2-204ENST00000397760 1847 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
ABCA4P78363 ELMOD1-206ENST00000531234 1832 ntTSL 2 BASIC16.17■□□□□ 0.18
ABCA4P78363 PTX4-201ENST00000293922 1422 ntAPPRIS P2 TSL 1 (best) BASIC16.17■□□□□ 0.18
ABCA4P78363 ZBTB10-202ENST00000426744 9878 ntAPPRIS ALT2 TSL 5 BASIC16.17■□□□□ 0.18
ABCA4P78363 TTBK1-202ENST00000304139 2449 ntTSL 5 BASIC16.17■□□□□ 0.18
ABCA4P78363 AC099343.3-201ENST00000605834 2503 ntBASIC16.16■□□□□ 0.18
ABCA4P78363 ABHD5-205ENST00000458276 1690 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
ABCA4P78363 SPCS1-201ENST00000233025 1082 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
ABCA4P78363 ATP6V0C-201ENST00000330398 1175 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
ABCA4P78363 MRPL20-201ENST00000344843 721 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
ABCA4P78363 MPIG6B-205ENST00000375810 910 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
ABCA4P78363 LINC02247-201ENST00000417135 743 ntTSL 3 BASIC16.16■□□□□ 0.18
ABCA4P78363 AC021066.1-201ENST00000549788 647 ntTSL 3 BASIC16.16■□□□□ 0.18
ABCA4P78363 TNNT1-204ENST00000585321 995 ntAPPRIS ALT2 TSL 5 BASIC16.16■□□□□ 0.18
ABCA4P78363 AC024243.1-201ENST00000609234 778 ntBASIC16.16■□□□□ 0.18
ABCA4P78363 GXYLT1P4-201ENST00000613576 1192 ntBASIC16.16■□□□□ 0.18
ABCA4P78363 CADM1-222ENST00000616271 1246 ntTSL 5 BASIC16.16■□□□□ 0.18
ABCA4P78363 TAX1BP3-202ENST00000611779 1302 ntTSL 2 BASIC16.16■□□□□ 0.18
ABCA4P78363 GRINA-201ENST00000313269 1968 ntAPPRIS P1 TSL 5 BASIC16.16■□□□□ 0.18
ABCA4P78363 HGFAC-204ENST00000511533 2016 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
ABCA4P78363 PCDH8-202ENST00000377942 5088 ntAPPRIS P4 TSL 1 (best) BASIC16.16■□□□□ 0.18
ABCA4P78363 ZNF598-204ENST00000563630 3371 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
ABCA4P78363 PKMYT1-201ENST00000262300 2171 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
ABCA4P78363 TMPO-204ENST00000393053 2374 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
ABCA4P78363 FAM83D-202ENST00000619850 2361 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
ABCA4P78363 TMSB4X-203ENST00000380636 1702 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
ABCA4P78363 LAPTM4B-204ENST00000619747 2758 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
ABCA4P78363 DALRD3-205ENST00000440857 2014 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
ABCA4P78363 C20orf196-201ENST00000303142 1154 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
ABCA4P78363 AP002469.2-201ENST00000531724 424 ntBASIC16.16■□□□□ 0.18
ABCA4P78363 PRTN3-202ENST00000544537 1036 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
ABCA4P78363 AC003688.1-201ENST00000577138 489 ntAPPRIS P1 TSL 3 BASIC16.16■□□□□ 0.18
ABCA4P78363 PTGIR-204ENST00000596260 1009 ntTSL 2 BASIC16.16■□□□□ 0.18
ABCA4P78363 TRPV6-209ENST00000638686 2298 ntAPPRIS P2 TSL 1 (best) BASIC16.16■□□□□ 0.18
ABCA4P78363 CHRNB2-205ENST00000637900 2390 ntAPPRIS ALT1 TSL 5 BASIC16.16■□□□□ 0.18
ABCA4P78363 TNFRSF1A-213ENST00000540022 1527 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
ABCA4P78363 GJA4-201ENST00000342280 1622 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
ABCA4P78363 FAM187A-202ENST00000412523 1748 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
ABCA4P78363 AC125437.2-201ENST00000625180 2167 ntBASIC16.15■□□□□ 0.18
ABCA4P78363 RBM26-202ENST00000438724 5152 ntAPPRIS ALT1 TSL 1 (best) BASIC16.15■□□□□ 0.18
ABCA4P78363 AGTR1-209ENST00000497524 2359 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
ABCA4P78363 MICU3-201ENST00000318063 3992 ntAPPRIS P2 TSL 1 (best) BASIC16.15■□□□□ 0.18
ABCA4P78363 PPIH-202ENST00000372549 327 ntTSL 3 BASIC16.15■□□□□ 0.18
ABCA4P78363 TEX30-205ENST00000376029 959 ntTSL 2 BASIC16.15■□□□□ 0.18
ABCA4P78363 NFIB-201ENST00000380921 1274 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
ABCA4P78363 AL603832.1-201ENST00000421943 449 ntTSL 5 BASIC16.15■□□□□ 0.18
ABCA4P78363 TPSP2-201ENST00000561760 610 ntBASIC16.15■□□□□ 0.18
ABCA4P78363 SPEG-225ENST00000617028 815 ntTSL 5 BASIC16.15■□□□□ 0.18
ABCA4P78363 CCDC74B-202ENST00000392984 1353 ntAPPRIS ALT2 TSL 5 BASIC16.15■□□□□ 0.18
ABCA4P78363 CDK10-208ENST00000505473 1424 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
ABCA4P78363 KRT8P3-201ENST00000519669 1449 ntBASIC16.15■□□□□ 0.18
ABCA4P78363 WNT5B-203ENST00000537031 1437 ntAPPRIS P1 TSL 2 BASIC16.15■□□□□ 0.18
ABCA4P78363 SRP9-203ENST00000366839 1596 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
ABCA4P78363 ASL-205ENST00000395332 1622 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
ABCA4P78363 PACRGL-203ENST00000444671 1720 ntTSL 2 BASIC16.15■□□□□ 0.18
ABCA4P78363 MAP7-206ENST00000611373 2317 ntAPPRIS ALT2 TSL 5 BASIC16.15■□□□□ 0.18
ABCA4P78363 MEN1-206ENST00000377321 2614 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
ABCA4P78363 BSN-AS2-201ENST00000421598 2603 ntTSL 2 BASIC16.15■□□□□ 0.18
ABCA4P78363 BCL11A-209ENST00000489516 1508 ntTSL 5 BASIC16.15■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 11 ms