Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 AC037459.1-202ENST00000430850 531 ntAPPRIS P1 TSL 4 BASIC17.41■□□□□ 0.38
RNF4P78317 SNCB-205ENST00000510387 730 ntAPPRIS P1 TSL 2 BASIC17.41■□□□□ 0.38
RNF4P78317 PTP4A3-206ENST00000524028 963 ntTSL 5 BASIC17.41■□□□□ 0.38
RNF4P78317 SLC52A2-205ENST00000526752 710 ntTSL 3 BASIC17.41■□□□□ 0.38
RNF4P78317 WWOX-216ENST00000569818 525 ntBASIC17.41■□□□□ 0.38
RNF4P78317 JOSD2-204ENST00000598418 996 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
RNF4P78317 AC009477.2-201ENST00000635976 171 ntAPPRIS P1 BASIC17.41■□□□□ 0.38
RNF4P78317 MMP28-204ENST00000615136 2033 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
RNF4P78317 FGFR2-204ENST00000356226 3547 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
RNF4P78317 DMD-208ENST00000378680 1858 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
RNF4P78317 CAMKK1-202ENST00000348335 3563 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
RNF4P78317 CACNA1B-203ENST00000371355 9647 ntAPPRIS ALT2 TSL 5 BASIC17.41■□□□□ 0.38
RNF4P78317 FKBP3-202ENST00000396062 1346 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
RNF4P78317 CAB39-203ENST00000410084 1324 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
RNF4P78317 VLDLR-AS1-205ENST00000599229 1346 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
RNF4P78317 SMARCD1-201ENST00000381513 3237 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
RNF4P78317 PNMA8B-202ENST00000599531 5308 ntAPPRIS P1 BASIC17.41■□□□□ 0.38
RNF4P78317 LDHAL6A-202ENST00000396213 1716 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
RNF4P78317 AC011944.1-201ENST00000316148 1900 ntTSL 2 BASIC17.41■□□□□ 0.38
RNF4P78317 CYP21A2-222ENST00000435122 1914 ntTSL 2 BASIC17.41■□□□□ 0.38
RNF4P78317 ZDHHC18-202ENST00000374142 5020 ntAPPRIS P2 TSL 1 (best) BASIC17.41■□□□□ 0.38
RNF4P78317 KCNK4-205ENST00000538767 1389 ntTSL 2 BASIC17.4■□□□□ 0.38
RNF4P78317 HMBS-221ENST00000544387 1351 ntTSL 2 BASIC17.4■□□□□ 0.38
RNF4P78317 TMEM104-202ENST00000417024 1781 ntTSL 2 BASIC17.4■□□□□ 0.38
RNF4P78317 TRIM7-205ENST00000422067 1954 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
RNF4P78317 NDRG2-227ENST00000554143 1980 ntAPPRIS ALT1 TSL 2 BASIC17.4■□□□□ 0.38
RNF4P78317 GPR35-201ENST00000319838 2249 ntAPPRIS P3 TSL 2 BASIC17.4■□□□□ 0.38
RNF4P78317 STMN3-201ENST00000370053 2255 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
RNF4P78317 VBP1-201ENST00000286428 1686 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
RNF4P78317 AL109659.2-201ENST00000606809 1674 ntBASIC17.4■□□□□ 0.38
RNF4P78317 LINC01381-201ENST00000431650 466 ntTSL 3 BASIC17.4■□□□□ 0.38
RNF4P78317 TMEM64-204ENST00000519519 873 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
RNF4P78317 CCNJL-205ENST00000519673 940 ntTSL 2 BASIC17.4■□□□□ 0.38
RNF4P78317 ABHD14B-208ENST00000525795 980 ntAPPRIS P1 TSL 3 BASIC17.4■□□□□ 0.38
RNF4P78317 AC004448.5-201ENST00000579897 567 ntTSL 5 BASIC17.4■□□□□ 0.38
RNF4P78317 MIR3180-5-201ENST00000583743 153 ntBASIC17.4■□□□□ 0.38
RNF4P78317 C11orf80-214ENST00000532565 1948 ntAPPRIS ALT2 TSL 5 BASIC17.4■□□□□ 0.38
RNF4P78317 KRT81-202ENST00000615839 1505 ntAPPRIS ALT2 TSL 5 BASIC17.4■□□□□ 0.38
RNF4P78317 LRWD1-201ENST00000292616 2215 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
RNF4P78317 KAT5-203ENST00000377046 2237 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
RNF4P78317 SEPT6-202ENST00000354228 1576 ntAPPRIS P4 TSL 1 (best) BASIC17.4■□□□□ 0.38
RNF4P78317 ERCC2-203ENST00000391944 2334 ntTSL 1 (best) BASIC17.39■□□□□ 0.38
RNF4P78317 HOXB9-201ENST00000311177 2581 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.38
RNF4P78317 TMEM151A-201ENST00000327259 2562 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.38
RNF4P78317 P2RX2-206ENST00000389110 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.38
RNF4P78317 DIO3-201ENST00000510508 2102 ntAPPRIS P1 BASIC17.39■□□□□ 0.38
RNF4P78317 CPQ-201ENST00000220763 1947 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
RNF4P78317 ZDHHC3-205ENST00000424952 2687 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
RNF4P78317 TBC1D10C-201ENST00000312390 1497 ntTSL 5 BASIC17.39■□□□□ 0.37
RNF4P78317 AC013268.5-201ENST00000454928 1959 ntTSL 2 BASIC17.39■□□□□ 0.37
RNF4P78317 TUBA4A-202ENST00000392088 2499 ntTSL 2 BASIC17.39■□□□□ 0.37
RNF4P78317 STX5-202ENST00000377897 1785 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
RNF4P78317 BUD23-201ENST00000265758 1230 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
RNF4P78317 LGALS7B-201ENST00000314980 483 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
RNF4P78317 PHOSPHO2-201ENST00000359744 1125 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
RNF4P78317 ROMO1-202ENST00000374072 350 ntTSL 5 BASIC17.39■□□□□ 0.37
RNF4P78317 CD70-202ENST00000423145 881 ntTSL 2 BASIC17.39■□□□□ 0.37
RNF4P78317 RARRES2-205ENST00000482669 563 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
RNF4P78317 AC104596.1-202ENST00000507486 759 ntTSL 3 BASIC17.39■□□□□ 0.37
RNF4P78317 GCHFR-202ENST00000558467 785 ntTSL 2 BASIC17.39■□□□□ 0.37
RNF4P78317 RBM42-202ENST00000586618 771 ntTSL 3 BASIC17.39■□□□□ 0.37
RNF4P78317 GCOM1-202ENST00000380569 1846 ntAPPRIS P3 TSL 2 BASIC17.39■□□□□ 0.37
RNF4P78317 ANKRD40-201ENST00000285243 4184 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
RNF4P78317 AC036111.1-201ENST00000533973 1582 ntBASIC17.39■□□□□ 0.37
RNF4P78317 CIRBP-201ENST00000320936 1328 ntAPPRIS P3 TSL 1 (best) BASIC17.39■□□□□ 0.37
RNF4P78317 TYMS-201ENST00000323224 1327 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
RNF4P78317 CIRBP-207ENST00000586472 1303 ntAPPRIS P3 TSL 3 BASIC17.39■□□□□ 0.37
RNF4P78317 PTGES2-214ENST00000617202 1344 ntTSL 5 BASIC17.39■□□□□ 0.37
RNF4P78317 DOC2A-209ENST00000564979 1630 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
RNF4P78317 OLFM1-205ENST00000371796 2492 ntTSL 2 BASIC17.39■□□□□ 0.37
RNF4P78317 CKMT1A-202ENST00000413453 1911 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
RNF4P78317 TSGA10IP-203ENST00000532620 1925 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
RNF4P78317 CD177-203ENST00000618265 2222 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
RNF4P78317 COL13A1-205ENST00000398978 3093 ntAPPRIS P4 TSL 5 BASIC17.39■□□□□ 0.37
RNF4P78317 ANKRD65-201ENST00000427211 1976 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
RNF4P78317 RNPEPL1-201ENST00000270357 5658 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
RNF4P78317 RELB-201ENST00000221452 2294 ntAPPRIS P2 TSL 1 (best) BASIC17.38■□□□□ 0.37
RNF4P78317 EPHX4-201ENST00000370383 1437 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
RNF4P78317 FADS2-209ENST00000521849 1703 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
RNF4P78317 PTPRK-218ENST00000525459 1722 ntTSL 2 BASIC17.38■□□□□ 0.37
RNF4P78317 AC008556.1-201ENST00000610908 2040 ntBASIC17.38■□□□□ 0.37
RNF4P78317 TBXA2R-201ENST00000375190 2608 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
RNF4P78317 CD164L2-202ENST00000374027 1457 ntAPPRIS P3 TSL 1 (best) BASIC17.38■□□□□ 0.37
RNF4P78317 OGFOD2-205ENST00000454694 1488 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
RNF4P78317 LTBP4-201ENST00000204005 5032 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
RNF4P78317 YBX3-201ENST00000228251 1796 ntAPPRIS P3 TSL 1 (best) BASIC17.38■□□□□ 0.37
RNF4P78317 PDCD10-201ENST00000392750 2067 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
RNF4P78317 FXYD6-211ENST00000539526 2132 ntAPPRIS P2 TSL 1 (best) BASIC17.38■□□□□ 0.37
RNF4P78317 C22orf39-205ENST00000542103 1523 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
RNF4P78317 UNC5B-201ENST00000335350 6841 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
RNF4P78317 PODXL2-201ENST00000342480 2186 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
RNF4P78317 OCIAD2-201ENST00000273860 636 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
RNF4P78317 GLRX2-201ENST00000367439 701 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
RNF4P78317 ILF2-202ENST00000368681 726 ntTSL 2 BASIC17.38■□□□□ 0.37
RNF4P78317 AC009947.2-201ENST00000444014 672 ntBASIC17.38■□□□□ 0.37
RNF4P78317 AC104076.2-201ENST00000448912 469 ntBASIC17.38■□□□□ 0.37
RNF4P78317 RPL39L-203ENST00000455270 653 ntAPPRIS P1 TSL 2 BASIC17.38■□□□□ 0.37
RNF4P78317 COX11P1-201ENST00000489116 835 ntBASIC17.38■□□□□ 0.37
RNF4P78317 NDUFV2-207ENST00000497577 868 ntTSL 2 BASIC17.38■□□□□ 0.37
RNF4P78317 CMTM3-210ENST00000565666 769 ntTSL 3 BASIC17.38■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 43 ms