Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 AL359747.1-201ENST00000442370 536 ntTSL 2 BASIC18.25■□□□□ 0.51
FOXA1P55317 AC133681.1-201ENST00000465482 601 ntBASIC18.25■□□□□ 0.51
FOXA1P55317 AC091564.2-201ENST00000527191 399 ntTSL 3 BASIC18.25■□□□□ 0.51
FOXA1P55317 HLX-AS1-201ENST00000552026 563 ntTSL 4 BASIC18.25■□□□□ 0.51
FOXA1P55317 SUMO2-203ENST00000578238 490 ntTSL 2 BASIC18.25■□□□□ 0.51
FOXA1P55317 AC068587.9-201ENST00000641814 219 ntBASIC18.25■□□□□ 0.51
FOXA1P55317 HCK-202ENST00000375852 2082 ntAPPRIS ALT2 TSL 1 (best) BASIC18.25■□□□□ 0.51
FOXA1P55317 HYAL1-204ENST00000395144 2081 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
FOXA1P55317 KATNBL1P6-202ENST00000562413 1466 ntBASIC18.25■□□□□ 0.51
FOXA1P55317 FAM213B-205ENST00000444521 2827 ntAPPRIS ALT2 TSL 2 BASIC18.25■□□□□ 0.51
FOXA1P55317 HCLS1-201ENST00000314583 2000 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
FOXA1P55317 GPR137-204ENST00000438980 1596 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
FOXA1P55317 C5orf30-203ENST00000515669 1573 ntAPPRIS P1 TSL 3 BASIC18.25■□□□□ 0.51
FOXA1P55317 FUT4-201ENST00000358752 6059 ntAPPRIS P1 BASIC18.24■□□□□ 0.51
FOXA1P55317 TRIM73-202ENST00000430211 1321 ntAPPRIS ALT2 TSL 2 BASIC18.24■□□□□ 0.51
FOXA1P55317 TPPP3-204ENST00000562206 1410 ntAPPRIS P1 TSL 2 BASIC18.24■□□□□ 0.51
FOXA1P55317 SLC39A3-202ENST00000455372 2940 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
FOXA1P55317 TXNRD3-202ENST00000523403 2351 ntAPPRIS ALT2 TSL 2 BASIC18.24■□□□□ 0.51
FOXA1P55317 NECTIN1-201ENST00000264025 5840 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
FOXA1P55317 HOXB8-201ENST00000239144 1823 ntAPPRIS P2 TSL 2 BASIC18.24■□□□□ 0.51
FOXA1P55317 C2CD2-202ENST00000380486 6345 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
FOXA1P55317 VIPR1-201ENST00000325123 2773 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
FOXA1P55317 NR4A2-204ENST00000409572 2878 ntAPPRIS P1 TSL 5 BASIC18.24■□□□□ 0.51
FOXA1P55317 ISG20-202ENST00000379224 540 ntTSL 3 BASIC18.24■□□□□ 0.51
FOXA1P55317 ROPN1L-202ENST00000503804 1291 ntAPPRIS P1 TSL 2 BASIC18.24■□□□□ 0.51
FOXA1P55317 RN7SL471P-201ENST00000580476 299 ntBASIC18.24■□□□□ 0.51
FOXA1P55317 AC110285.5-201ENST00000611501 352 ntBASIC18.24■□□□□ 0.51
FOXA1P55317 AC073648.6-201ENST00000641589 218 ntBASIC18.24■□□□□ 0.51
FOXA1P55317 GPBAR1-202ENST00000519574 1382 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
FOXA1P55317 RNASET2-214ENST00000620173 1391 ntTSL 5 BASIC18.24■□□□□ 0.51
FOXA1P55317 P2RX2-208ENST00000542301 1881 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
FOXA1P55317 PPP2R2B-203ENST00000394411 2071 ntAPPRIS P1 TSL 2 BASIC18.24■□□□□ 0.51
FOXA1P55317 DNAJA3-203ENST00000431375 2294 ntTSL 2 BASIC18.24■□□□□ 0.51
FOXA1P55317 CDK5R1-201ENST00000313401 4325 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
FOXA1P55317 LGALS12-203ENST00000394618 1618 ntAPPRIS P3 TSL 1 (best) BASIC18.23■□□□□ 0.51
FOXA1P55317 GAL3ST1-206ENST00000406955 1635 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
FOXA1P55317 KCNIP4-206ENST00000447367 1641 ntTSL 5 BASIC18.23■□□□□ 0.51
FOXA1P55317 TFCP2-205ENST00000549867 1727 ntTSL 5 BASIC18.23■□□□□ 0.51
FOXA1P55317 SOST-201ENST00000301691 2300 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
FOXA1P55317 SAMD11-212ENST00000617307 2314 ntAPPRIS ALT2 TSL 5 BASIC18.23■□□□□ 0.51
FOXA1P55317 TMEM25-203ENST00000354284 1456 ntTSL 2 BASIC18.23■□□□□ 0.51
FOXA1P55317 CRYZL1-203ENST00000381540 1482 ntTSL 2 BASIC18.23■□□□□ 0.51
FOXA1P55317 GTF3A-201ENST00000381140 1383 ntAPPRIS ALT2 TSL 1 (best) BASIC18.23■□□□□ 0.51
FOXA1P55317 ROPN1-209ENST00000495093 1376 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
FOXA1P55317 MRPL12-201ENST00000333676 1028 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
FOXA1P55317 NMRK1-201ENST00000361092 1185 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
FOXA1P55317 NIFKP9-201ENST00000419265 221 ntBASIC18.23■□□□□ 0.51
FOXA1P55317 CCDC107-206ENST00000426546 1242 ntAPPRIS P3 TSL 1 (best) BASIC18.23■□□□□ 0.51
FOXA1P55317 RPS2P4-201ENST00000476944 856 ntBASIC18.23■□□□□ 0.51
FOXA1P55317 ATP6V0E1-204ENST00000519911 718 ntTSL 2 BASIC18.23■□□□□ 0.51
FOXA1P55317 BAALC-AS1-207ENST00000522856 594 ntTSL 3 BASIC18.23■□□□□ 0.51
FOXA1P55317 PDXDC2P-202ENST00000527016 543 ntTSL 3 BASIC18.23■□□□□ 0.51
FOXA1P55317 KAZN-209ENST00000636564 1197 ntTSL 5 BASIC18.23■□□□□ 0.51
FOXA1P55317 KCNN4-209ENST00000615047 2029 ntTSL 5 BASIC18.23■□□□□ 0.51
FOXA1P55317 CDAN1-201ENST00000356231 4637 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
FOXA1P55317 FDXR-214ENST00000581530 1827 ntAPPRIS P3 TSL 1 (best) BASIC18.23■□□□□ 0.51
FOXA1P55317 PTN-201ENST00000348225 1614 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
FOXA1P55317 CARMIL2-201ENST00000334583 4687 ntAPPRIS P3 TSL 1 (best) BASIC18.23■□□□□ 0.51
FOXA1P55317 CGRRF1-201ENST00000216420 2057 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
FOXA1P55317 FOXP1-214ENST00000493089 2703 ntAPPRIS ALT1 TSL 2 BASIC18.22■□□□□ 0.51
FOXA1P55317 AC124066.1-201ENST00000581122 1660 ntTSL 5 BASIC18.22■□□□□ 0.51
FOXA1P55317 ZCCHC17-205ENST00000615916 1652 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
FOXA1P55317 CIZ1-226ENST00000629610 2855 ntAPPRIS ALT2 TSL 2 BASIC18.22■□□□□ 0.51
FOXA1P55317 ADAMTS16-203ENST00000511368 2682 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
FOXA1P55317 NECTIN3-206ENST00000485303 3664 ntAPPRIS P3 TSL 1 (best) BASIC18.22■□□□□ 0.51
FOXA1P55317 SYT7-209ENST00000542836 1362 ntTSL 5 BASIC18.22■□□□□ 0.51
FOXA1P55317 TADA3-201ENST00000301964 2355 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
FOXA1P55317 ABCC5-204ENST00000392579 1848 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
FOXA1P55317 MB21D2-201ENST00000392452 3368 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
FOXA1P55317 PSMG1-202ENST00000380900 907 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
FOXA1P55317 NDUFS6-202ENST00000469176 550 ntTSL 2 BASIC18.22■□□□□ 0.51
FOXA1P55317 HGNC:18790-208ENST00000506380 798 ntAPPRIS P1 TSL 3 BASIC18.22■□□□□ 0.51
FOXA1P55317 AP003501.2-201ENST00000524433 477 ntTSL 4 BASIC18.22■□□□□ 0.51
FOXA1P55317 ADM-205ENST00000528544 586 ntTSL 2 BASIC18.22■□□□□ 0.51
FOXA1P55317 PSMC3IP-208ENST00000590760 664 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
FOXA1P55317 L34079.3-201ENST00000600242 546 ntTSL 4 BASIC18.22■□□□□ 0.51
FOXA1P55317 AL353593.2-202ENST00000602947 550 ntTSL 4 BASIC18.22■□□□□ 0.51
FOXA1P55317 AC004816.2-201ENST00000622856 284 ntTSL 5 BASIC18.22■□□□□ 0.51
FOXA1P55317 ABBA01031674.1-201ENST00000635145 728 ntBASIC18.22■□□□□ 0.51
FOXA1P55317 MCOLN2-201ENST00000284027 1729 ntAPPRIS P1 TSL 5 BASIC18.22■□□□□ 0.51
FOXA1P55317 DUS1L-202ENST00000354321 2151 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
FOXA1P55317 CD2AP-201ENST00000359314 5412 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
FOXA1P55317 OSM-201ENST00000215781 1854 ntAPPRIS P3 TSL 1 (best) BASIC18.22■□□□□ 0.51
FOXA1P55317 PACSIN2-203ENST00000402229 1883 ntAPPRIS P1 TSL 5 BASIC18.22■□□□□ 0.51
FOXA1P55317 ZCWPW1-201ENST00000360951 2110 ntAPPRIS ALT2 TSL 2 BASIC18.22■□□□□ 0.51
FOXA1P55317 GPATCH3-201ENST00000361720 2123 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
FOXA1P55317 PCCA-202ENST00000376285 2494 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
FOXA1P55317 CCDC50-202ENST00000392456 2454 ntAPPRIS P4 TSL 1 (best) BASIC18.22■□□□□ 0.51
FOXA1P55317 NAT6-201ENST00000354862 1330 ntAPPRIS P3 TSL 1 (best) BASIC18.22■□□□□ 0.51
FOXA1P55317 FAM49B-214ENST00000519540 2021 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
FOXA1P55317 KRT5-201ENST00000252242 2531 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
FOXA1P55317 EXOSC3-201ENST00000327304 1806 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
FOXA1P55317 SPERT-202ENST00000378966 1842 ntAPPRIS ALT2 TSL 1 (best) BASIC18.21■□□□□ 0.51
FOXA1P55317 PPP2R2C-209ENST00000515571 1832 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
FOXA1P55317 KRT8P32-201ENST00000512863 1461 ntBASIC18.21■□□□□ 0.51
FOXA1P55317 TULP1-208ENST00000614066 2084 ntAPPRIS ALT2 TSL 5 BASIC18.21■□□□□ 0.51
FOXA1P55317 PLK3-201ENST00000372201 2492 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
FOXA1P55317 SIVA1-201ENST00000329967 802 ntAPPRIS P2 TSL 1 (best) BASIC18.21■□□□□ 0.51
FOXA1P55317 AC091390.4-202ENST00000476426 537 ntBASIC18.21■□□□□ 0.51
FOXA1P55317 SBF2-AS1-202ENST00000499953 854 ntTSL 5 BASIC18.21■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 16.3 ms