Protein–RNA interactions for Protein: P42858

HTT, Huntingtin, humanhuman

Predictions only

Length 3,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HTTP42858 GJA4-201ENST00000342280 1622 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
HTTP42858 CENPT-215ENST00000564817 1638 ntAPPRIS ALT2 TSL 5 BASIC21.16■□□□□ 0.98
HTTP42858 AC008556.1-201ENST00000610908 2040 ntBASIC21.16■□□□□ 0.98
HTTP42858 DEPTOR-203ENST00000523492 1397 ntTSL 2 BASIC21.16■□□□□ 0.98
HTTP42858 CCDC130-201ENST00000221554 1792 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
HTTP42858 AL512380.2-201ENST00000637901 1780 ntTSL 5 BASIC21.16■□□□□ 0.98
HTTP42858 PAQR6-201ENST00000292291 1908 ntAPPRIS P3 TSL 1 (best) BASIC21.16■□□□□ 0.98
HTTP42858 CAMK2B-216ENST00000440254 2097 ntAPPRIS P4 TSL 1 (best) BASIC21.16■□□□□ 0.98
HTTP42858 TSTD1-203ENST00000368024 457 ntTSL 2 BASIC21.16■□□□□ 0.98
HTTP42858 TMEM128-202ENST00000382753 1221 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
HTTP42858 RFPL4AP1-201ENST00000530883 850 ntBASIC21.16■□□□□ 0.98
HTTP42858 AC005256.1-202ENST00000592934 415 ntTSL 2 BASIC21.16■□□□□ 0.98
HTTP42858 IFRD1-201ENST00000005558 1834 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
HTTP42858 PDZD7-201ENST00000370215 2032 ntTSL 2 BASIC21.16■□□□□ 0.98
HTTP42858 NDOR1-201ENST00000344894 1794 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
HTTP42858 ZGPAT-201ENST00000328969 1945 ntTSL 2 BASIC21.16■□□□□ 0.98
HTTP42858 SRSF4-201ENST00000373795 2387 ntAPPRIS P2 TSL 1 (best) BASIC21.16■□□□□ 0.98
HTTP42858 TMEM163-201ENST00000281924 1892 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
HTTP42858 STX8-201ENST00000306357 1246 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
HTTP42858 CD1E-211ENST00000368166 1271 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
HTTP42858 HSD17B8-203ENST00000374662 990 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
HTTP42858 MSANTD3-201ENST00000374885 786 ntTSL 2 BASIC21.15■□□□□ 0.98
HTTP42858 MED15P5-201ENST00000423150 992 ntBASIC21.15■□□□□ 0.98
HTTP42858 AL109827.1-203ENST00000541176 872 ntAPPRIS P5 TSL 2 BASIC21.15■□□□□ 0.98
HTTP42858 CPLX3-201ENST00000395018 2082 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
HTTP42858 ILDR2-204ENST00000525740 2242 ntTSL 5 BASIC21.15■□□□□ 0.98
HTTP42858 DGUOK-201ENST00000264093 1144 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
HTTP42858 DGUOK-202ENST00000348222 880 ntTSL 2 BASIC21.15■□□□□ 0.98
HTTP42858 C22orf39-203ENST00000399568 1005 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
HTTP42858 LYRM1-209ENST00000568663 857 ntAPPRIS P1 TSL 4 BASIC21.15■□□□□ 0.98
HTTP42858 DGUOK-208ENST00000629438 1029 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
HTTP42858 CTGF-201ENST00000367976 2339 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
HTTP42858 MEIS2-207ENST00000557796 2666 ntTSL 5 BASIC21.15■□□□□ 0.98
HTTP42858 MRPL3-202ENST00000425847 1457 ntTSL 2 BASIC21.15■□□□□ 0.98
HTTP42858 HTD2-206ENST00000481972 1378 ntAPPRIS P1 TSL 2 BASIC21.15■□□□□ 0.98
HTTP42858 ANKRD37-201ENST00000335174 1141 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
HTTP42858 HES2-202ENST00000377836 507 ntTSL 2 BASIC21.15■□□□□ 0.98
HTTP42858 DNAJB3-202ENST00000449667 1266 ntBASIC21.15■□□□□ 0.98
HTTP42858 S100A6-205ENST00000496817 673 ntAPPRIS P1 TSL 2 BASIC21.15■□□□□ 0.98
HTTP42858 LINC01413-201ENST00000564843 772 ntTSL 3 BASIC21.15■□□□□ 0.98
HTTP42858 NUTM2B-AS1-211ENST00000601369 1233 ntTSL 2 BASIC21.15■□□□□ 0.98
HTTP42858 AL157832.3-201ENST00000635764 1005 ntTSL 5 BASIC21.15■□□□□ 0.98
HTTP42858 PDLIM2-206ENST00000409141 1463 ntTSL 2 BASIC21.15■□□□□ 0.98
HTTP42858 LINC00565-201ENST00000562710 2331 ntBASIC21.15■□□□□ 0.98
HTTP42858 HNRNPDL-210ENST00000630827 1318 ntAPPRIS ALT2 TSL 5 BASIC21.15■□□□□ 0.98
HTTP42858 SLC25A29-202ENST00000392908 2242 ntTSL 2 BASIC21.14■□□□□ 0.98
HTTP42858 AL365232.1-201ENST00000423730 1636 ntAPPRIS P1 TSL 5 BASIC21.14■□□□□ 0.98
HTTP42858 RAB5C-202ENST00000393860 1912 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
HTTP42858 ILDR1-203ENST00000393631 1456 ntTSL 1 (best) BASIC21.14■□□□□ 0.98
HTTP42858 TSPY8-203ENST00000383005 435 ntTSL 5 BASIC21.14■□□□□ 0.98
HTTP42858 TSPY3-202ENST00000440483 414 ntTSL 5 BASIC21.14■□□□□ 0.98
HTTP42858 TXNRD2-212ENST00000485358 850 ntTSL 2 BASIC21.14■□□□□ 0.98
HTTP42858 SART3-203ENST00000546611 1184 ntBASIC21.14■□□□□ 0.98
HTTP42858 AC008608.2-201ENST00000606089 416 ntBASIC21.14■□□□□ 0.98
HTTP42858 SLC52A2-209ENST00000530047 1757 ntAPPRIS P1 TSL 2 BASIC21.14■□□□□ 0.98
HTTP42858 THAP3-203ENST00000377627 2053 ntAPPRIS P3 TSL 2 BASIC21.14■□□□□ 0.97
HTTP42858 FNDC8-201ENST00000158009 1388 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
HTTP42858 ZFYVE21-202ENST00000311141 1383 ntAPPRIS P3 TSL 1 (best) BASIC21.14■□□□□ 0.97
HTTP42858 HOXB1-202ENST00000577092 1414 ntBASIC21.14■□□□□ 0.97
HTTP42858 STEAP2-204ENST00000394626 2456 ntTSL 2 BASIC21.14■□□□□ 0.97
HTTP42858 HSP90B1-211ENST00000640977 1127 ntTSL 5 BASIC21.14■□□□□ 0.97
HTTP42858 GOSR2-210ENST00000576910 1891 ntAPPRIS ALT1 TSL 5 BASIC21.14■□□□□ 0.97
HTTP42858 STARD3-209ENST00000544210 1666 ntTSL 2 BASIC21.14■□□□□ 0.97
HTTP42858 DUT-201ENST00000331200 2147 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
HTTP42858 SPATS2L-204ENST00000409140 2463 ntAPPRIS P1 TSL 2 BASIC21.14■□□□□ 0.97
HTTP42858 WNT7B-204ENST00000410089 2202 ntTSL 5 BASIC21.14■□□□□ 0.97
HTTP42858 NUS1P2-201ENST00000417358 873 ntBASIC21.13■□□□□ 0.97
HTTP42858 AC013402.1-201ENST00000456999 561 ntTSL 4 BASIC21.13■□□□□ 0.97
HTTP42858 AC012640.2-201ENST00000561606 901 ntBASIC21.13■□□□□ 0.97
HTTP42858 SPINT1-AS1-203ENST00000565315 629 ntTSL 2 BASIC21.13■□□□□ 0.97
HTTP42858 FCGRT-210ENST00000596975 1054 ntTSL 5 BASIC21.13■□□□□ 0.97
HTTP42858 GPR32P1-201ENST00000601788 811 ntBASIC21.13■□□□□ 0.97
HTTP42858 TOR1A-201ENST00000351698 2076 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
HTTP42858 PTPRC-206ENST00000413409 1338 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
HTTP42858 JAKMIP1-208ENST00000637373 1362 ntTSL 5 BASIC21.13■□□□□ 0.97
HTTP42858 ACHE-201ENST00000241069 2172 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
HTTP42858 LAYN-202ENST00000375615 1836 ntAPPRIS ALT2 TSL 1 (best) BASIC21.13■□□□□ 0.97
HTTP42858 CAMK2B-203ENST00000347193 1577 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
HTTP42858 GPSM1-206ENST00000616132 2270 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
HTTP42858 CYMP-203ENST00000474680 1263 ntBASIC21.13■□□□□ 0.97
HTTP42858 AC007375.3-201ENST00000600936 2314 ntBASIC21.13■□□□□ 0.97
HTTP42858 CDK2AP2-201ENST00000301488 1378 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
HTTP42858 POMGNT1-201ENST00000371984 2728 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
HTTP42858 LINC00634-201ENST00000381348 1510 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
HTTP42858 SPAG16-202ENST00000331683 2177 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
HTTP42858 TEAD4-201ENST00000358409 1637 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
HTTP42858 UBL4A-202ENST00000369660 2382 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
HTTP42858 UBAP1-204ENST00000625521 2029 ntTSL 2 BASIC21.13■□□□□ 0.97
HTTP42858 DNAJC1-202ENST00000376980 2106 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
HTTP42858 RBCK1-206ENST00000400247 790 ntTSL 2 BASIC21.13■□□□□ 0.97
HTTP42858 TMEM222-201ENST00000374076 1599 ntAPPRIS P2 TSL 1 (best) BASIC21.13■□□□□ 0.97
HTTP42858 AL445472.1-201ENST00000452532 1007 ntTSL 2 BASIC21.12■□□□□ 0.97
HTTP42858 AC008825.1-201ENST00000504398 452 ntTSL 3 BASIC21.12■□□□□ 0.97
HTTP42858 TEN1-204ENST00000588202 862 ntTSL 3 BASIC21.12■□□□□ 0.97
HTTP42858 CCDC61-202ENST00000594087 1017 ntAPPRIS ALT2 TSL 5 BASIC21.12■□□□□ 0.97
HTTP42858 TREX2-203ENST00000338525 2116 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
HTTP42858 SLC22A17-202ENST00000354772 2238 ntAPPRIS ALT2 TSL 1 (best) BASIC21.12■□□□□ 0.97
HTTP42858 KREMEN2-201ENST00000303746 2326 ntAPPRIS P4 TSL 1 (best) BASIC21.12■□□□□ 0.97
HTTP42858 MELTF-202ENST00000296351 1650 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
HTTP42858 UBXN1-201ENST00000294119 1291 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 50.6 ms