Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 RAB1B-201ENST00000311481 2007 ntAPPRIS P1 TSL 1 (best) BASIC31.53■■■□□ 2.64
CUX1P39880 LIMS2-207ENST00000409808 2315 ntAPPRIS ALT1 TSL 5 BASIC31.53■■■□□ 2.64
CUX1P39880 GPR83-202ENST00000539203 1909 ntTSL 5 BASIC31.53■■■□□ 2.64
CUX1P39880 LINC01586-201ENST00000506090 1840 ntTSL 2 BASIC31.52■■■□□ 2.64
CUX1P39880 TEX264-209ENST00000457573 1448 ntAPPRIS P3 TSL 5 BASIC31.52■■■□□ 2.64
CUX1P39880 POU2F2-215ENST00000560398 1788 ntTSL 5 BASIC31.52■■■□□ 2.64
CUX1P39880 TREX1-205ENST00000625293 1783 ntBASIC31.52■■■□□ 2.64
CUX1P39880 KRT18-207ENST00000550600 1696 ntTSL 1 (best) BASIC31.52■■■□□ 2.64
CUX1P39880 STX8-201ENST00000306357 1246 ntAPPRIS P1 TSL 1 (best) BASIC31.52■■■□□ 2.64
CUX1P39880 FGF8-203ENST00000346714 694 ntAPPRIS ALT2 TSL 1 (best) BASIC31.52■■■□□ 2.64
CUX1P39880 AC087289.1-201ENST00000586808 890 ntTSL 5 BASIC31.52■■■□□ 2.64
CUX1P39880 DNAAF3-207ENST00000527223 2228 ntAPPRIS ALT2 TSL 2 BASIC31.52■■■□□ 2.64
CUX1P39880 OGG1-202ENST00000302008 2191 ntAPPRIS ALT2 TSL 5 BASIC31.52■■■□□ 2.64
CUX1P39880 DGAT2-201ENST00000228027 2453 ntAPPRIS P1 TSL 1 (best) BASIC31.52■■■□□ 2.64
CUX1P39880 IQCJ-SCHIP1-204ENST00000485419 2445 ntAPPRIS ALT2 TSL 2 BASIC31.52■■■□□ 2.64
CUX1P39880 TPSD1-201ENST00000211076 1499 ntAPPRIS P2 TSL 1 (best) BASIC31.52■■■□□ 2.64
CUX1P39880 LINC02028-204ENST00000449350 1419 ntTSL 3 BASIC31.52■■■□□ 2.64
CUX1P39880 UBE2E1-202ENST00000346855 1398 ntTSL 3 BASIC31.51■■■□□ 2.64
CUX1P39880 ABHD14B-202ENST00000361143 1636 ntAPPRIS P1 TSL 1 (best) BASIC31.51■■■□□ 2.64
CUX1P39880 FAM189B-201ENST00000350210 2379 ntTSL 1 (best) BASIC31.51■■■□□ 2.64
CUX1P39880 MIR574-201ENST00000385209 96 ntBASIC31.51■■■□□ 2.63
CUX1P39880 AL590627.1-203ENST00000421194 1026 ntBASIC31.51■■■□□ 2.63
CUX1P39880 C6orf48-210ENST00000614363 748 ntAPPRIS P1 TSL 5 BASIC31.51■■■□□ 2.63
CUX1P39880 AC139530.3-201ENST00000620344 690 ntBASIC31.51■■■□□ 2.63
CUX1P39880 CFAP100-203ENST00000505024 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC31.51■■■□□ 2.63
CUX1P39880 KRT89P-201ENST00000620027 1478 ntBASIC31.51■■■□□ 2.63
CUX1P39880 AC034236.2-201ENST00000606662 1610 ntBASIC31.51■■■□□ 2.63
CUX1P39880 REM2-201ENST00000267396 1923 ntAPPRIS P1 TSL 1 (best) BASIC31.5■■■□□ 2.63
CUX1P39880 CELA2A-201ENST00000359621 919 ntAPPRIS P1 TSL 1 (best) BASIC31.5■■■□□ 2.63
CUX1P39880 AC092159.3-201ENST00000439196 571 ntTSL 4 BASIC31.5■■■□□ 2.63
CUX1P39880 NECTIN3-AS1-204ENST00000476301 568 ntTSL 4 BASIC31.5■■■□□ 2.63
CUX1P39880 PAQR4-204ENST00000574988 869 ntTSL 2 BASIC31.5■■■□□ 2.63
CUX1P39880 LINC01711-201ENST00000598340 967 ntBASIC31.5■■■□□ 2.63
CUX1P39880 MCRIP2-211ENST00000629534 341 ntTSL 2 BASIC31.5■■■□□ 2.63
CUX1P39880 MBIP-203ENST00000416007 1648 ntAPPRIS P3 TSL 1 (best) BASIC31.5■■■□□ 2.63
CUX1P39880 AL035252.2-201ENST00000454676 3168 ntTSL 2 BASIC31.5■■■□□ 2.63
CUX1P39880 ACOT2-204ENST00000613168 1553 ntAPPRIS P5 TSL 1 (best) BASIC31.5■■■□□ 2.63
CUX1P39880 TTC3-203ENST00000399010 2115 ntTSL 5 BASIC31.5■■■□□ 2.63
CUX1P39880 TUBGCP3-204ENST00000464139 2461 ntTSL 1 (best) BASIC31.5■■■□□ 2.63
CUX1P39880 SMIM24-201ENST00000215531 1329 ntAPPRIS P2 TSL 1 (best) BASIC31.5■■■□□ 2.63
CUX1P39880 SLC26A11-212ENST00000572725 1862 ntAPPRIS P1 TSL 1 (best) BASIC31.5■■■□□ 2.63
CUX1P39880 PHOSPHO1-201ENST00000310544 1816 ntAPPRIS P1 TSL 2 BASIC31.49■■■□□ 2.63
CUX1P39880 EDN3-203ENST00000371025 1153 ntAPPRIS ALT2 TSL 1 (best) BASIC31.49■■■□□ 2.63
CUX1P39880 PPOX-214ENST00000535223 664 ntTSL 3 BASIC31.49■■■□□ 2.63
CUX1P39880 AP001005.1-201ENST00000571755 1248 ntBASIC31.49■■■□□ 2.63
CUX1P39880 IGHV3-41-201ENST00000613121 348 ntBASIC31.49■■■□□ 2.63
CUX1P39880 AL773604.1-201ENST00000617417 272 ntBASIC31.49■■■□□ 2.63
CUX1P39880 AC124864.1-201ENST00000623408 392 ntBASIC31.49■■■□□ 2.63
CUX1P39880 CIZ1-203ENST00000357558 2907 ntAPPRIS ALT2 TSL 5 BASIC31.49■■■□□ 2.63
CUX1P39880 AC243591.1-201ENST00000452967 1364 ntBASIC31.49■■■□□ 2.63
CUX1P39880 SLC39A5-209ENST00000454355 1968 ntAPPRIS P1 TSL 1 (best) BASIC31.49■■■□□ 2.63
CUX1P39880 C19orf35-201ENST00000342063 2574 ntAPPRIS P1 TSL 2 BASIC31.49■■■□□ 2.63
CUX1P39880 KCNN2-208ENST00000631899 2098 ntAPPRIS ALT2 TSL 5 BASIC31.49■■■□□ 2.63
CUX1P39880 CCDC74A-202ENST00000409856 1298 ntAPPRIS ALT2 TSL 1 (best) BASIC31.49■■■□□ 2.63
CUX1P39880 AC036176.1-201ENST00000589905 785 ntTSL 2 BASIC31.49■■■□□ 2.63
CUX1P39880 AC148477.8-201ENST00000624298 468 ntBASIC31.49■■■□□ 2.63
CUX1P39880 TMEM74-201ENST00000297459 1741 ntAPPRIS P1 TSL 1 (best) BASIC31.49■■■□□ 2.63
CUX1P39880 SETMAR-206ENST00000430981 1671 ntTSL 1 (best) BASIC31.48■■■□□ 2.63
CUX1P39880 NECAB3-202ENST00000375238 1942 ntAPPRIS P1 TSL 1 (best) BASIC31.48■■■□□ 2.63
CUX1P39880 PDLIM2-206ENST00000409141 1463 ntTSL 2 BASIC31.48■■■□□ 2.63
CUX1P39880 MRGPRF-AS1-201ENST00000538407 1490 ntTSL 1 (best) BASIC31.48■■■□□ 2.63
CUX1P39880 RUFY1-201ENST00000319449 2646 ntAPPRIS P3 TSL 1 (best) BASIC31.48■■■□□ 2.63
CUX1P39880 DSCC1-201ENST00000313655 2314 ntAPPRIS P1 TSL 1 (best) BASIC31.48■■■□□ 2.63
CUX1P39880 DLK2-203ENST00000372488 1590 ntAPPRIS P3 TSL 1 (best) BASIC31.48■■■□□ 2.63
CUX1P39880 PWWP2AP1-201ENST00000429776 2273 ntBASIC31.48■■■□□ 2.63
CUX1P39880 CDC26-201ENST00000374206 872 ntAPPRIS P1 TSL 1 (best) BASIC31.48■■■□□ 2.63
CUX1P39880 AC018712.1-201ENST00000455767 687 ntBASIC31.48■■■□□ 2.63
CUX1P39880 AC024563.2-201ENST00000603282 481 ntBASIC31.48■■■□□ 2.63
CUX1P39880 CYP51A1P1-201ENST00000492267 1507 ntBASIC31.48■■■□□ 2.63
CUX1P39880 SMN1-204ENST00000506163 1445 ntAPPRIS ALT2 TSL 1 (best) BASIC31.47■■■□□ 2.63
CUX1P39880 NDUFB9-201ENST00000276689 711 ntAPPRIS P1 TSL 1 (best) BASIC31.47■■■□□ 2.63
CUX1P39880 ROMO1-204ENST00000374078 498 ntAPPRIS P1 TSL 1 (best) BASIC31.47■■■□□ 2.63
CUX1P39880 DYNLL1-203ENST00000392509 814 ntAPPRIS P1 TSL 3 BASIC31.47■■■□□ 2.63
CUX1P39880 SATB1-AS1-201ENST00000414198 737 ntTSL 2 BASIC31.47■■■□□ 2.63
CUX1P39880 AMACR-208ENST00000512079 858 ntTSL 1 (best) BASIC31.47■■■□□ 2.63
CUX1P39880 FLT3LG-206ENST00000597551 951 ntAPPRIS P1 TSL 1 (best) BASIC31.47■■■□□ 2.63
CUX1P39880 AL161669.4-201ENST00000634353 732 ntAPPRIS P1 TSL 2 BASIC31.47■■■□□ 2.63
CUX1P39880 AF228730.7-201ENST00000641842 219 ntBASIC31.47■■■□□ 2.63
CUX1P39880 ZNF331-202ENST00000411977 2248 ntAPPRIS P1 TSL 1 (best) BASIC31.47■■■□□ 2.63
CUX1P39880 TRIM13-206ENST00000457662 1489 ntAPPRIS P3 TSL 1 (best) BASIC31.47■■■□□ 2.63
CUX1P39880 RPL3-201ENST00000216146 1442 ntAPPRIS P1 TSL 1 (best) BASIC31.46■■■□□ 2.63
CUX1P39880 WNT8A-204ENST00000506684 1543 ntTSL 1 (best) BASIC31.46■■■□□ 2.63
CUX1P39880 MRPL43-203ENST00000318364 1010 ntAPPRIS P1 TSL 1 (best) BASIC31.46■■■□□ 2.63
CUX1P39880 MRPL43-204ENST00000342071 894 ntTSL 5 BASIC31.46■■■□□ 2.63
CUX1P39880 ZFAND2B-207ENST00000409412 569 ntTSL 2 BASIC31.46■■■□□ 2.63
CUX1P39880 AC104971.2-201ENST00000588144 1209 ntTSL 2 BASIC31.46■■■□□ 2.63
CUX1P39880 AC011530.1-201ENST00000593999 558 ntTSL 2 BASIC31.46■■■□□ 2.63
CUX1P39880 DBNL-217ENST00000468694 2068 ntAPPRIS ALT2 TSL 2 BASIC31.46■■■□□ 2.63
CUX1P39880 NFE2L1-204ENST00000536222 2172 ntTSL 2 BASIC31.46■■■□□ 2.63
CUX1P39880 GRB7-202ENST00000394204 1667 ntTSL 1 (best) BASIC31.46■■■□□ 2.63
CUX1P39880 KMT5C-201ENST00000255613 2308 ntAPPRIS P1 TSL 1 (best) BASIC31.46■■■□□ 2.63
CUX1P39880 TEAD1-206ENST00000527636 2544 ntAPPRIS ALT2 TSL 1 (best) BASIC31.46■■■□□ 2.63
CUX1P39880 RAB11FIP4-201ENST00000394744 1968 ntTSL 2 BASIC31.46■■■□□ 2.63
CUX1P39880 STN1-201ENST00000224950 1417 ntAPPRIS P1 TSL 1 (best) BASIC31.46■■■□□ 2.63
CUX1P39880 SRSF2-202ENST00000359995 1927 ntAPPRIS P1 TSL 1 (best) BASIC31.45■■■□□ 2.63
CUX1P39880 EIF5A2-203ENST00000474096 570 ntTSL 4 BASIC31.45■■■□□ 2.63
CUX1P39880 PLXND1-205ENST00000504689 546 ntTSL 3 BASIC31.45■■■□□ 2.63
CUX1P39880 GSPT1-203ENST00000439887 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC31.45■■■□□ 2.63
CUX1P39880 ISOC2-203ENST00000438389 1566 ntTSL 2 BASIC31.45■■■□□ 2.63
CUX1P39880 NUDT16-201ENST00000502852 1552 ntTSL 2 BASIC31.45■■■□□ 2.63
Retrieved 100 of 98,524 protein–RNA pairs in 41.2 ms