Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 AC013356.2-201ENST00000559730 729 ntTSL 3 BASIC22.93■■□□□ 1.26
BRCA1P38398 AC011511.2-201ENST00000592893 918 ntTSL 3 BASIC22.93■■□□□ 1.26
BRCA1P38398 AC114341.1-201ENST00000618070 349 ntBASIC22.93■■□□□ 1.26
BRCA1P38398 FRAT1-201ENST00000371021 2649 ntAPPRIS P1 BASIC22.93■■□□□ 1.26
BRCA1P38398 ANXA8-202ENST00000583448 1971 ntTSL 1 (best) BASIC22.93■■□□□ 1.26
BRCA1P38398 SH2D3A-201ENST00000245908 2296 ntAPPRIS P1 TSL 1 (best) BASIC22.93■■□□□ 1.26
BRCA1P38398 STN1-201ENST00000224950 1417 ntAPPRIS P1 TSL 1 (best) BASIC22.93■■□□□ 1.26
BRCA1P38398 RMND5B-201ENST00000313386 1929 ntAPPRIS P1 TSL 1 (best) BASIC22.92■■□□□ 1.26
BRCA1P38398 CLDN6-202ENST00000396925 1739 ntAPPRIS P1 TSL 5 BASIC22.92■■□□□ 1.26
BRCA1P38398 ARRDC2-202ENST00000379656 2528 ntTSL 2 BASIC22.92■■□□□ 1.26
BRCA1P38398 PMEPA1-204ENST00000395814 800 ntTSL 3 BASIC22.92■■□□□ 1.26
BRCA1P38398 ZGLP1-201ENST00000403352 1028 ntAPPRIS ALT2 TSL 5 BASIC22.92■■□□□ 1.26
BRCA1P38398 AC012363.1-201ENST00000455707 575 ntTSL 4 BASIC22.92■■□□□ 1.26
BRCA1P38398 AC025162.1-201ENST00000554022 565 ntTSL 4 BASIC22.92■■□□□ 1.26
BRCA1P38398 RLN3-202ENST00000585987 541 ntTSL 1 (best) BASIC22.92■■□□□ 1.26
BRCA1P38398 CCL3-204ENST00000613922 778 ntAPPRIS P1 TSL 1 (best) BASIC22.92■■□□□ 1.26
BRCA1P38398 DNAJB5-201ENST00000312316 2391 ntAPPRIS P1 TSL 1 (best) BASIC22.92■■□□□ 1.26
BRCA1P38398 HTD2-206ENST00000481972 1378 ntAPPRIS P1 TSL 2 BASIC22.92■■□□□ 1.26
BRCA1P38398 AC020907.5-201ENST00000624372 1936 ntBASIC22.92■■□□□ 1.26
BRCA1P38398 ZHX3-212ENST00000558993 1528 ntTSL 5 BASIC22.92■■□□□ 1.26
BRCA1P38398 AC007364.1-201ENST00000449714 1022 ntTSL 2 BASIC22.92■■□□□ 1.26
BRCA1P38398 AC136604.3-201ENST00000508188 429 ntTSL 3 BASIC22.92■■□□□ 1.26
BRCA1P38398 AC005258.1-201ENST00000621615 1268 ntAPPRIS P1 TSL 2 BASIC22.92■■□□□ 1.26
BRCA1P38398 PDLIM3-202ENST00000284770 1766 ntTSL 1 (best) BASIC22.91■■□□□ 1.26
BRCA1P38398 SPSB3-208ENST00000566339 1784 ntAPPRIS P1 TSL 1 (best) BASIC22.91■■□□□ 1.26
BRCA1P38398 MPPED1-203ENST00000443721 2507 ntAPPRIS P1 TSL 2 BASIC22.91■■□□□ 1.26
BRCA1P38398 NUDT17-201ENST00000334513 1473 ntAPPRIS P1 TSL 5 BASIC22.91■■□□□ 1.26
BRCA1P38398 MYL5-206ENST00000506838 2956 ntTSL 2 BASIC22.91■■□□□ 1.26
BRCA1P38398 TAF6L-201ENST00000294168 2116 ntAPPRIS P1 TSL 1 (best) BASIC22.91■■□□□ 1.26
BRCA1P38398 TNFSF13-204ENST00000396542 726 ntTSL 3 BASIC22.91■■□□□ 1.26
BRCA1P38398 HIST2H3DP1-201ENST00000401004 416 ntBASIC22.91■■□□□ 1.26
BRCA1P38398 CFL1-212ENST00000531413 636 ntTSL 3 BASIC22.91■■□□□ 1.26
BRCA1P38398 SPINT1-AS1-203ENST00000565315 629 ntTSL 2 BASIC22.91■■□□□ 1.26
BRCA1P38398 GZMM-202ENST00000592501 941 ntTSL 3 BASIC22.91■■□□□ 1.26
BRCA1P38398 AC004130.1-202ENST00000603156 666 ntTSL 2 BASIC22.91■■□□□ 1.26
BRCA1P38398 CYP2F1-201ENST00000331105 1720 ntAPPRIS P1 TSL 1 (best) BASIC22.91■■□□□ 1.26
BRCA1P38398 KCNK4-207ENST00000539216 1723 ntAPPRIS P1 TSL 1 (best) BASIC22.91■■□□□ 1.26
BRCA1P38398 PGAM1-201ENST00000334828 1830 ntAPPRIS P1 TSL 1 (best) BASIC22.91■■□□□ 1.26
BRCA1P38398 TRIM46-204ENST00000368385 1864 ntTSL 1 (best) BASIC22.91■■□□□ 1.26
BRCA1P38398 RTBDN-207ENST00000589272 2076 ntTSL 2 BASIC22.91■■□□□ 1.26
BRCA1P38398 DMAP1-201ENST00000315913 1552 ntAPPRIS P1 TSL 1 (best) BASIC22.91■■□□□ 1.26
BRCA1P38398 TUBA3C-201ENST00000400113 1551 ntAPPRIS P1 TSL 5 BASIC22.91■■□□□ 1.26
BRCA1P38398 TNK2-201ENST00000333602 5270 ntAPPRIS P1 TSL 1 (best) BASIC22.9■■□□□ 1.26
BRCA1P38398 CHTOP-207ENST00000614256 1840 ntTSL 3 BASIC22.9■■□□□ 1.26
BRCA1P38398 MOBP-208ENST00000441980 830 ntAPPRIS P4 TSL 4 BASIC22.9■■□□□ 1.26
BRCA1P38398 AL591424.1-201ENST00000442569 1213 ntBASIC22.9■■□□□ 1.26
BRCA1P38398 ENDOV-205ENST00000518644 625 ntTSL 4 BASIC22.9■■□□□ 1.26
BRCA1P38398 MRPL52-210ENST00000555345 895 ntTSL 2 BASIC22.9■■□□□ 1.26
BRCA1P38398 AL356488.2-201ENST00000602755 427 ntBASIC22.9■■□□□ 1.26
BRCA1P38398 HTRA3-202ENST00000382512 2023 ntTSL 1 (best) BASIC22.9■■□□□ 1.26
BRCA1P38398 TTC3-203ENST00000399010 2115 ntTSL 5 BASIC22.9■■□□□ 1.26
BRCA1P38398 DUSP15-201ENST00000278979 1732 ntTSL 2 BASIC22.9■■□□□ 1.26
BRCA1P38398 SLC46A3-202ENST00000380814 2121 ntAPPRIS ALT1 TSL 1 (best) BASIC22.9■■□□□ 1.26
BRCA1P38398 SLC39A4-202ENST00000301305 2174 ntAPPRIS P1 TSL 1 (best) BASIC22.9■■□□□ 1.26
BRCA1P38398 DUSP15-204ENST00000398083 1212 ntTSL 5 BASIC22.9■■□□□ 1.26
BRCA1P38398 SMIM27-204ENST00000453396 1003 ntAPPRIS ALT2 TSL 3 BASIC22.9■■□□□ 1.26
BRCA1P38398 PDCD6-207ENST00000509581 1156 ntTSL 1 (best) BASIC22.9■■□□□ 1.26
BRCA1P38398 AC027117.2-201ENST00000522768 510 ntTSL 3 BASIC22.9■■□□□ 1.26
BRCA1P38398 MVB12A-211ENST00000529939 1091 ntTSL 3 BASIC22.9■■□□□ 1.26
BRCA1P38398 RTBDN-213ENST00000592204 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC22.9■■□□□ 1.26
BRCA1P38398 AC012615.5-201ENST00000592720 581 ntTSL 4 BASIC22.9■■□□□ 1.26
BRCA1P38398 AC027601.4-201ENST00000611259 610 ntBASIC22.9■■□□□ 1.26
BRCA1P38398 FOXP1-223ENST00000622151 429 ntTSL 3 BASIC22.9■■□□□ 1.26
BRCA1P38398 AC116407.3-201ENST00000623905 1129 ntBASIC22.9■■□□□ 1.26
BRCA1P38398 IL17RE-201ENST00000383814 2704 ntAPPRIS P2 TSL 1 (best) BASIC22.9■■□□□ 1.26
BRCA1P38398 AC005906.2-207ENST00000639005 1580 ntTSL 5 BASIC22.89■■□□□ 1.26
BRCA1P38398 TREX1-205ENST00000625293 1783 ntBASIC22.89■■□□□ 1.26
BRCA1P38398 KCNN2-208ENST00000631899 2098 ntAPPRIS ALT2 TSL 5 BASIC22.89■■□□□ 1.26
BRCA1P38398 NEU4-205ENST00000407683 2273 ntAPPRIS P1 TSL 2 BASIC22.89■■□□□ 1.26
BRCA1P38398 FNDC8-201ENST00000158009 1388 ntAPPRIS P1 TSL 1 (best) BASIC22.89■■□□□ 1.25
BRCA1P38398 INF2-204ENST00000398337 1689 ntTSL 1 (best) BASIC22.89■■□□□ 1.25
BRCA1P38398 GNB2-205ENST00000419828 1285 ntTSL 5 BASIC22.89■■□□□ 1.25
BRCA1P38398 DNAJB3-202ENST00000449667 1266 ntBASIC22.89■■□□□ 1.25
BRCA1P38398 EDNRA-206ENST00000511804 1569 ntTSL 2 BASIC22.89■■□□□ 1.25
BRCA1P38398 PAX9-204ENST00000554201 1289 ntTSL 2 BASIC22.89■■□□□ 1.25
BRCA1P38398 HAUS4-218ENST00000555986 1626 ntTSL 5 BASIC22.89■■□□□ 1.25
BRCA1P38398 AC012640.2-201ENST00000561606 901 ntBASIC22.89■■□□□ 1.25
BRCA1P38398 KATNBL1P6-202ENST00000562413 1466 ntBASIC22.89■■□□□ 1.25
BRCA1P38398 AC011840.4-201ENST00000578471 627 ntBASIC22.89■■□□□ 1.25
BRCA1P38398 AC005256.1-202ENST00000592934 415 ntTSL 2 BASIC22.89■■□□□ 1.25
BRCA1P38398 HSP90B1-210ENST00000614327 1338 ntTSL 1 (best) BASIC22.89■■□□□ 1.25
BRCA1P38398 HNRNPDL-210ENST00000630827 1318 ntAPPRIS ALT2 TSL 5 BASIC22.89■■□□□ 1.25
BRCA1P38398 PAXBP1-201ENST00000290178 2564 ntTSL 1 (best) BASIC22.89■■□□□ 1.25
BRCA1P38398 MAGEA6-201ENST00000329342 1740 ntAPPRIS P1 TSL 1 (best) BASIC22.88■■□□□ 1.25
BRCA1P38398 MAGEA3-201ENST00000370278 1724 ntAPPRIS P1 TSL 1 (best) BASIC22.88■■□□□ 1.25
BRCA1P38398 SH3GLB2-203ENST00000372564 2982 ntAPPRIS P1 TSL 1 (best) BASIC22.88■■□□□ 1.25
BRCA1P38398 PHOSPHO2-201ENST00000359744 1125 ntAPPRIS P1 TSL 1 (best) BASIC22.88■■□□□ 1.25
BRCA1P38398 RBM17P3-201ENST00000417687 1192 ntBASIC22.88■■□□□ 1.25
BRCA1P38398 AC004967.1-201ENST00000453589 447 ntBASIC22.88■■□□□ 1.25
BRCA1P38398 SDR39U1-202ENST00000538105 1041 ntTSL 2 BASIC22.88■■□□□ 1.25
BRCA1P38398 MIR3180-4-201ENST00000582223 153 ntBASIC22.88■■□□□ 1.25
BRCA1P38398 AL591684.3-201ENST00000605187 298 ntBASIC22.88■■□□□ 1.25
BRCA1P38398 AC073314.1-201ENST00000568729 2216 ntBASIC22.88■■□□□ 1.25
BRCA1P38398 NF2-201ENST00000334961 2020 ntTSL 1 (best) BASIC22.88■■□□□ 1.25
BRCA1P38398 AL512408.1-201ENST00000569378 2000 ntBASIC22.88■■□□□ 1.25
BRCA1P38398 PAQR6-215ENST00000623241 1961 ntTSL 1 (best) BASIC22.88■■□□□ 1.25
BRCA1P38398 ACBD4-201ENST00000321854 1806 ntAPPRIS P1 TSL 1 (best) BASIC22.88■■□□□ 1.25
BRCA1P38398 STAU2-229ENST00000524300 3065 ntAPPRIS P4 TSL 2 BASIC22.88■■□□□ 1.25
BRCA1P38398 AGER-205ENST00000375069 1538 ntTSL 1 (best) BASIC22.88■■□□□ 1.25
BRCA1P38398 PAN3-AS1-201ENST00000563843 1351 ntBASIC22.88■■□□□ 1.25
Retrieved 100 of 98,524 protein–RNA pairs in 81.1 ms