Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 GPR20-201ENST00000377741 1515 ntAPPRIS P1 TSL 3 BASIC14.36□□□□□ -0.11
HLA-DMBP28068 EWSR1-207ENST00000406548 2207 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
HLA-DMBP28068 ZNF692-204ENST00000451251 2065 ntAPPRIS ALT2 TSL 2 BASIC14.35□□□□□ -0.11
HLA-DMBP28068 MCCC1-214ENST00000610757 2410 ntTSL 5 BASIC14.35□□□□□ -0.11
HLA-DMBP28068 DCAF4-201ENST00000353777 1940 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
HLA-DMBP28068 SYT3-206ENST00000600079 2463 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
HLA-DMBP28068 AC254629.1-202ENST00000618276 2112 ntTSL 2 BASIC14.35□□□□□ -0.11
HLA-DMBP28068 RBM15B-201ENST00000563281 6641 ntAPPRIS P1 BASIC14.35□□□□□ -0.11
HLA-DMBP28068 AC011416.4-201ENST00000639283 2195 ntTSL 5 BASIC14.35□□□□□ -0.11
HLA-DMBP28068 AC005332.8-201ENST00000622750 2735 ntBASIC14.35□□□□□ -0.11
HLA-DMBP28068 IZUMO2-201ENST00000293405 728 ntAPPRIS P2 TSL 1 (best) BASIC14.35□□□□□ -0.11
HLA-DMBP28068 MTHFD1L-201ENST00000367307 1049 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
HLA-DMBP28068 PEX7-202ENST00000367756 680 ntTSL 3 BASIC14.35□□□□□ -0.11
HLA-DMBP28068 BOLA1-203ENST00000369153 1096 ntAPPRIS P1 TSL 3 BASIC14.35□□□□□ -0.11
HLA-DMBP28068 POLR2J-202ENST00000393794 784 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
HLA-DMBP28068 FLYWCH2-202ENST00000396958 1036 ntAPPRIS P2 TSL 1 (best) BASIC14.35□□□□□ -0.11
HLA-DMBP28068 AC137630.1-201ENST00000452042 782 ntTSL 4 BASIC14.35□□□□□ -0.11
HLA-DMBP28068 ZNF529-AS1-202ENST00000475219 1033 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
HLA-DMBP28068 LINC01301-204ENST00000530725 577 ntTSL 4 BASIC14.35□□□□□ -0.11
HLA-DMBP28068 CAPN5-206ENST00000531028 534 ntTSL 5 BASIC14.35□□□□□ -0.11
HLA-DMBP28068 RNASEK-202ENST00000548577 810 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
HLA-DMBP28068 AC007493.2-201ENST00000568427 478 ntTSL 3 BASIC14.35□□□□□ -0.11
HLA-DMBP28068 DOK4-218ENST00000569548 1848 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
HLA-DMBP28068 HEXDC-203ENST00000577944 1820 ntTSL 5 BASIC14.35□□□□□ -0.11
HLA-DMBP28068 HBEGF-201ENST00000230990 2386 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
HLA-DMBP28068 SAMD11-210ENST00000616016 2391 ntTSL 5 BASIC14.35□□□□□ -0.11
HLA-DMBP28068 SAMD11-215ENST00000618779 2368 ntAPPRIS ALT2 TSL 5 BASIC14.35□□□□□ -0.11
HLA-DMBP28068 OCSTAMP-201ENST00000279028 2043 ntAPPRIS P1 TSL 5 BASIC14.35□□□□□ -0.11
HLA-DMBP28068 GAS2L1P1-201ENST00000420145 1480 ntBASIC14.35□□□□□ -0.11
HLA-DMBP28068 KANK3-201ENST00000330915 2787 ntAPPRIS P2 TSL 1 (best) BASIC14.35□□□□□ -0.11
HLA-DMBP28068 KRT86-202ENST00000423955 2217 ntAPPRIS P1 TSL 2 BASIC14.35□□□□□ -0.11
HLA-DMBP28068 TMEM230-206ENST00000379283 1660 ntAPPRIS P1 TSL 3 BASIC14.35□□□□□ -0.11
HLA-DMBP28068 ENOPH1-203ENST00000509635 1874 ntTSL 3 BASIC14.35□□□□□ -0.11
HLA-DMBP28068 MAPKAP1-205ENST00000373503 3045 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
HLA-DMBP28068 MGARP-201ENST00000398955 1339 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
HLA-DMBP28068 DHRS4-204ENST00000543741 1340 ntTSL 2 BASIC14.35□□□□□ -0.11
HLA-DMBP28068 FLT1-201ENST00000282397 7092 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
HLA-DMBP28068 KTI12-201ENST00000371614 1714 ntAPPRIS P1 BASIC14.35□□□□□ -0.11
HLA-DMBP28068 UNG-202ENST00000336865 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
HLA-DMBP28068 WNT8B-201ENST00000343737 2112 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
HLA-DMBP28068 FST-201ENST00000256759 2519 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
HLA-DMBP28068 LGALS9C-209ENST00000581545 1378 ntTSL 5 BASIC14.34□□□□□ -0.11
HLA-DMBP28068 HDAC11-221ENST00000522202 1559 ntAPPRIS ALT2 TSL 2 BASIC14.34□□□□□ -0.11
HLA-DMBP28068 BANP-202ENST00000355022 2164 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
HLA-DMBP28068 BAG3-201ENST00000369085 2571 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
HLA-DMBP28068 ZNF746-202ENST00000458143 3797 ntAPPRIS ALT2 TSL 2 BASIC14.34□□□□□ -0.11
HLA-DMBP28068 APCDD1-201ENST00000355285 3809 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
HLA-DMBP28068 LGI4-201ENST00000310123 2814 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
HLA-DMBP28068 KIAA1549-201ENST00000422774 6283 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
HLA-DMBP28068 IMP3-201ENST00000314852 2028 ntAPPRIS P1 TSL 2 BASIC14.34□□□□□ -0.11
HLA-DMBP28068 NFATC4-228ENST00000556759 2025 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
HLA-DMBP28068 ARSA-203ENST00000395619 1824 ntAPPRIS P1 TSL 5 BASIC14.34□□□□□ -0.11
HLA-DMBP28068 RASSF1-210ENST00000616212 1842 ntTSL 2 BASIC14.34□□□□□ -0.11
HLA-DMBP28068 TP53I3-202ENST00000335934 1635 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
HLA-DMBP28068 AC090340.1-201ENST00000620778 4980 ntBASIC14.34□□□□□ -0.11
HLA-DMBP28068 PRR23B-201ENST00000329447 1896 ntAPPRIS P1 BASIC14.34□□□□□ -0.11
HLA-DMBP28068 AL390961.4-201ENST00000623958 2535 ntBASIC14.34□□□□□ -0.11
HLA-DMBP28068 OPRD1-201ENST00000234961 9345 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
HLA-DMBP28068 MRPL15-201ENST00000260102 1147 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
HLA-DMBP28068 NDUFA8-201ENST00000373768 844 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
HLA-DMBP28068 AGTRAP-203ENST00000376629 1100 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
HLA-DMBP28068 AC007040.1-201ENST00000416229 477 ntTSL 3 BASIC14.34□□□□□ -0.11
HLA-DMBP28068 AC110769.1-201ENST00000420161 815 ntTSL 3 BASIC14.34□□□□□ -0.11
HLA-DMBP28068 TMEM9B-203ENST00000528117 949 ntTSL 2 BASIC14.34□□□□□ -0.11
HLA-DMBP28068 MIXL1-202ENST00000542034 839 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
HLA-DMBP28068 JPT2-204ENST00000561516 1065 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
HLA-DMBP28068 ELAC1-203ENST00000588577 694 ntTSL 2 BASIC14.34□□□□□ -0.11
HLA-DMBP28068 MTDHP1-201ENST00000605323 784 ntBASIC14.34□□□□□ -0.11
HLA-DMBP28068 AC013268.1-201ENST00000639717 1208 ntTSL 5 BASIC14.34□□□□□ -0.11
HLA-DMBP28068 AL023875.1-201ENST00000640777 796 ntBASIC14.34□□□□□ -0.11
HLA-DMBP28068 AC083906.6-201ENST00000641366 219 ntBASIC14.34□□□□□ -0.11
HLA-DMBP28068 SLCO4A1-201ENST00000217159 2776 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
HLA-DMBP28068 TMEM74-201ENST00000297459 1741 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
HLA-DMBP28068 NFKB2-201ENST00000189444 3011 ntAPPRIS ALT1 TSL 1 (best) BASIC14.34□□□□□ -0.11
HLA-DMBP28068 AC026471.1-201ENST00000564629 3026 ntBASIC14.34□□□□□ -0.11
HLA-DMBP28068 HYOU1-212ENST00000532519 2162 ntTSL 5 BASIC14.34□□□□□ -0.11
HLA-DMBP28068 AC135782.1-201ENST00000537498 2154 ntTSL 2 BASIC14.34□□□□□ -0.11
HLA-DMBP28068 SIKE1-201ENST00000060969 2190 ntAPPRIS P3 TSL 1 (best) BASIC14.34□□□□□ -0.11
HLA-DMBP28068 GPRC5B-201ENST00000300571 5213 ntAPPRIS P2 TSL 1 (best) BASIC14.34□□□□□ -0.11
HLA-DMBP28068 COMMD7-202ENST00000446419 1343 ntAPPRIS ALT1 TSL 2 BASIC14.34□□□□□ -0.11
HLA-DMBP28068 CCNA1-202ENST00000440264 1758 ntAPPRIS P1 TSL 2 BASIC14.34□□□□□ -0.11
HLA-DMBP28068 ACSF2-201ENST00000300441 2235 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
HLA-DMBP28068 TCP11-201ENST00000244645 2018 ntAPPRIS P3 TSL 1 (best) BASIC14.34□□□□□ -0.11
HLA-DMBP28068 GCSH-201ENST00000315467 1597 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
HLA-DMBP28068 ZNF561-AS1-201ENST00000585797 1593 ntTSL 2 BASIC14.34□□□□□ -0.11
HLA-DMBP28068 FAM3A-203ENST00000369641 1359 ntTSL 5 BASIC14.34□□□□□ -0.11
HLA-DMBP28068 TLNRD1-201ENST00000267984 4845 ntAPPRIS P1 BASIC14.34□□□□□ -0.11
HLA-DMBP28068 NFKBIZ-201ENST00000326151 2058 ntTSL 2 BASIC14.34□□□□□ -0.11
HLA-DMBP28068 ZNF395-211ENST00000523202 2068 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
HLA-DMBP28068 PKMYT1-203ENST00000431515 2308 ntTSL 2 BASIC14.33□□□□□ -0.11
HLA-DMBP28068 SAMD11-216ENST00000620200 1874 ntTSL 5 BASIC14.33□□□□□ -0.11
HLA-DMBP28068 KRT8-216ENST00000552551 2126 ntAPPRIS P1 TSL 2 BASIC14.33□□□□□ -0.11
HLA-DMBP28068 RNF157-201ENST00000269391 4955 ntAPPRIS P3 TSL 1 (best) BASIC14.33□□□□□ -0.11
HLA-DMBP28068 SLC16A13-201ENST00000308027 1748 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
HLA-DMBP28068 FADS2-209ENST00000521849 1703 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
HLA-DMBP28068 AC135050.7-201ENST00000624508 2218 ntBASIC14.33□□□□□ -0.12
HLA-DMBP28068 CHRAC1-201ENST00000220913 2488 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
HLA-DMBP28068 ARHGEF28-204ENST00000437974 5792 ntAPPRIS P3 TSL 1 (best) BASIC14.33□□□□□ -0.12
HLA-DMBP28068 CD72-201ENST00000259633 1548 ntAPPRIS P2 TSL 1 (best) BASIC14.33□□□□□ -0.12
HLA-DMBP28068 TH-202ENST00000333684 1535 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
Retrieved 100 of 98,524 protein–RNA pairs in 55.5 ms