Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 TRAM1L1-201ENST00000310754 2023 ntAPPRIS P1 BASIC18.74■□□□□ 0.59
MSH3P20585 ZNF598-204ENST00000563630 3371 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
MSH3P20585 ERLIN2-202ENST00000335171 1742 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
MSH3P20585 NFE2-204ENST00000553070 1523 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
MSH3P20585 ORAI2-204ENST00000473939 2493 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
MSH3P20585 MYC-205ENST00000524013 2150 ntAPPRIS ALT1 TSL 1 (best) BASIC18.74■□□□□ 0.59
MSH3P20585 ADORA2A-215ENST00000618076 2630 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
MSH3P20585 METRN-204ENST00000568223 3325 ntAPPRIS P2 TSL 1 (best) BASIC18.73■□□□□ 0.59
MSH3P20585 HAUS4-217ENST00000555367 1454 ntTSL 5 BASIC18.73■□□□□ 0.59
MSH3P20585 KATNBL1P6-202ENST00000562413 1466 ntBASIC18.73■□□□□ 0.59
MSH3P20585 PRMT1-201ENST00000391851 1393 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
MSH3P20585 SLC25A1P2-201ENST00000430693 912 ntBASIC18.73■□□□□ 0.59
MSH3P20585 FBXO32-202ENST00000443022 1227 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
MSH3P20585 CCR12P-201ENST00000446203 998 ntBASIC18.73■□□□□ 0.59
MSH3P20585 MIR1302-2HG-202ENST00000473358 712 ntTSL 5 BASIC18.73■□□□□ 0.59
MSH3P20585 ANK1-211ENST00000522231 1060 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
MSH3P20585 ANK1-212ENST00000522543 1160 ntTSL 2 BASIC18.73■□□□□ 0.59
MSH3P20585 AC140725.1-202ENST00000561145 712 ntTSL 5 BASIC18.73■□□□□ 0.59
MSH3P20585 TMEM74-201ENST00000297459 1741 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
MSH3P20585 ABI3-202ENST00000419580 1718 ntAPPRIS P1 TSL 5 BASIC18.73■□□□□ 0.59
MSH3P20585 CLDND1-203ENST00000394181 2170 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
MSH3P20585 AL691447.2-201ENST00000454869 2162 ntTSL 2 BASIC18.73■□□□□ 0.59
MSH3P20585 DACT2-204ENST00000610183 2088 ntAPPRIS ALT2 TSL 1 (best) BASIC18.73■□□□□ 0.59
MSH3P20585 NOP14-AS1-202ENST00000505731 1999 ntTSL 2 BASIC18.73■□□□□ 0.59
MSH3P20585 PER3-203ENST00000377541 1524 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
MSH3P20585 AC139491.1-201ENST00000512675 1516 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
MSH3P20585 ZBTB4-201ENST00000311403 5956 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
MSH3P20585 NFKBIL1-201ENST00000376145 1401 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
MSH3P20585 PCBP3-206ENST00000400314 2202 ntAPPRIS P2 TSL 5 BASIC18.73■□□□□ 0.59
MSH3P20585 HOXB6-201ENST00000225648 1660 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
MSH3P20585 SRSF2-202ENST00000359995 1927 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
MSH3P20585 CPZ-202ENST00000360986 2267 ntAPPRIS ALT2 TSL 1 (best) BASIC18.72■□□□□ 0.59
MSH3P20585 CYP2D8P-201ENST00000433633 1490 ntBASIC18.72■□□□□ 0.59
MSH3P20585 PRRT1-202ENST00000375150 1726 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
MSH3P20585 ATXN7L2-202ENST00000369870 2318 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
MSH3P20585 JAKMIP1-208ENST00000637373 1362 ntTSL 5 BASIC18.72■□□□□ 0.59
MSH3P20585 ACD-202ENST00000393919 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC18.72■□□□□ 0.59
MSH3P20585 KRT17P2-202ENST00000326333 1174 ntTSL 2 BASIC18.72■□□□□ 0.59
MSH3P20585 MRPL54-201ENST00000330133 626 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
MSH3P20585 TIMM17B-201ENST00000376582 950 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
MSH3P20585 GPC5-201ENST00000377067 2957 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
MSH3P20585 AL954642.1-201ENST00000428088 538 ntTSL 3 BASIC18.72■□□□□ 0.59
MSH3P20585 PSMD9-208ENST00000542602 516 ntTSL 3 BASIC18.72■□□□□ 0.59
MSH3P20585 SLC25A11-202ENST00000544061 952 ntTSL 3 BASIC18.72■□□□□ 0.59
MSH3P20585 YPEL3-207ENST00000566134 761 ntTSL 5 BASIC18.72■□□□□ 0.59
MSH3P20585 CCDC28A-203ENST00000617445 1240 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
MSH3P20585 AC116562.4-202ENST00000641738 218 ntBASIC18.72■□□□□ 0.59
MSH3P20585 ZHX3-212ENST00000558993 1528 ntTSL 5 BASIC18.72■□□□□ 0.59
MSH3P20585 SLC31A2-201ENST00000259392 1785 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
MSH3P20585 KLHL2-201ENST00000226725 3134 ntAPPRIS P3 TSL 1 (best) BASIC18.72■□□□□ 0.59
MSH3P20585 AL049812.1-201ENST00000432563 2267 ntBASIC18.72■□□□□ 0.59
MSH3P20585 NUTM2D-201ENST00000381697 3290 ntAPPRIS P5 TSL 1 (best) BASIC18.72■□□□□ 0.59
MSH3P20585 KMT5B-203ENST00000401547 2666 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
MSH3P20585 SMPD3-203ENST00000563226 2093 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
MSH3P20585 GMPPA-203ENST00000358215 1823 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
MSH3P20585 CALM2-201ENST00000272298 1302 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
MSH3P20585 SCARF2-202ENST00000622235 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC18.72■□□□□ 0.59
MSH3P20585 KSR1-205ENST00000509603 2731 ntAPPRIS ALT2 TSL 5 BASIC18.72■□□□□ 0.59
MSH3P20585 FAM46A-203ENST00000369756 5537 ntAPPRIS ALT2 TSL 1 (best) BASIC18.72■□□□□ 0.59
MSH3P20585 SLC47A1-202ENST00000395585 1998 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
MSH3P20585 PPP1R12C-202ENST00000435544 2363 ntTSL 2 BASIC18.71■□□□□ 0.59
MSH3P20585 AC093503.3-201ENST00000624917 2352 ntBASIC18.71■□□□□ 0.59
MSH3P20585 RPP25-201ENST00000322177 3049 ntAPPRIS P1 BASIC18.71■□□□□ 0.59
MSH3P20585 TNFRSF19-202ENST00000382258 1625 ntAPPRIS P4 TSL 1 (best) BASIC18.71■□□□□ 0.59
MSH3P20585 TAL1-202ENST00000371884 4642 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
MSH3P20585 FUCA1-201ENST00000374479 2047 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
MSH3P20585 TPSB2-203ENST00000612142 1352 ntAPPRIS P5 TSL 1 (best) BASIC18.71■□□□□ 0.59
MSH3P20585 P2RY6-212ENST00000618468 2431 ntAPPRIS P1 TSL 3 BASIC18.71■□□□□ 0.59
MSH3P20585 ARL5A-201ENST00000295087 5326 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
MSH3P20585 HOXB9-201ENST00000311177 2581 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
MSH3P20585 STXBP2-203ENST00000441779 1914 ntTSL 2 BASIC18.71■□□□□ 0.59
MSH3P20585 SAMD14-203ENST00000503131 1938 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
MSH3P20585 PRDM8-202ENST00000415738 3124 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
MSH3P20585 TSPY14P-201ENST00000303979 915 ntBASIC18.71■□□□□ 0.59
MSH3P20585 SMIM1-201ENST00000444870 546 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
MSH3P20585 ADCYAP1-202ENST00000450565 918 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
MSH3P20585 ABHD11-207ENST00000458339 890 ntTSL 3 BASIC18.71■□□□□ 0.59
MSH3P20585 STXBP1-203ENST00000476182 566 ntTSL 5 BASIC18.71■□□□□ 0.59
MSH3P20585 AC128688.1-201ENST00000487626 519 ntBASIC18.71■□□□□ 0.59
MSH3P20585 YKT6-207ENST00000496112 1270 ntTSL 2 BASIC18.71■□□□□ 0.59
MSH3P20585 TMEM185A-204ENST00000507237 903 ntTSL 2 BASIC18.71■□□□□ 0.59
MSH3P20585 RPS20-210ENST00000523936 899 ntTSL 2 BASIC18.71■□□□□ 0.59
MSH3P20585 NCAM1-AS1-201ENST00000526229 1081 ntTSL 2 BASIC18.71■□□□□ 0.59
MSH3P20585 EGLN1P1-201ENST00000531623 762 ntBASIC18.71■□□□□ 0.59
MSH3P20585 HRASLS5-205ENST00000539221 1167 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
MSH3P20585 CDKN2A-213ENST00000579122 666 ntTSL 3 BASIC18.71■□□□□ 0.59
MSH3P20585 ARHGDIA-207ENST00000580685 1201 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
MSH3P20585 IRF3-222ENST00000599144 1117 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
MSH3P20585 L34079.3-201ENST00000600242 546 ntTSL 4 BASIC18.71■□□□□ 0.59
MSH3P20585 PHOSPHO2-206ENST00000616481 1252 ntAPPRIS P1 TSL 3 BASIC18.71■□□□□ 0.59
MSH3P20585 PHOSPHO2-208ENST00000617738 1053 ntAPPRIS P1 TSL 2 BASIC18.71■□□□□ 0.59
MSH3P20585 AC010947.1-201ENST00000623454 693 ntBASIC18.71■□□□□ 0.59
MSH3P20585 IQSEC2-218ENST00000640694 5958 ntAPPRIS ALT2 TSL 5 BASIC18.71■□□□□ 0.59
MSH3P20585 DAG1-219ENST00000538711 5582 ntAPPRIS P1 TSL 5 BASIC18.71■□□□□ 0.59
MSH3P20585 CD55-201ENST00000314754 2220 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
MSH3P20585 KRT8P3-201ENST00000519669 1449 ntBASIC18.71■□□□□ 0.59
MSH3P20585 NR2F1-205ENST00000615873 1427 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
MSH3P20585 MORC4-201ENST00000255495 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
MSH3P20585 RSAD1-201ENST00000258955 2528 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
MSH3P20585 ALG9-214ENST00000614444 2028 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 52.2 ms