Protein–RNA interactions for Protein: P17096

HMGA1, High mobility group protein HMG-I/HMG-Y, humanhuman

Known RBP Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1P17096 GPR146-201ENST00000397095 1969 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
HMGA1P17096 LHX6-201ENST00000340587 3457 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
HMGA1P17096 LAYN-203ENST00000436913 2590 ntTSL 2 BASIC19.53■□□□□ 0.72
HMGA1P17096 C19orf25-201ENST00000427685 1410 ntTSL 2 BASIC19.53■□□□□ 0.72
HMGA1P17096 ALG9-214ENST00000614444 2028 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
HMGA1P17096 FFAR3-201ENST00000327809 1796 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
HMGA1P17096 AL391807.1-203ENST00000604392 2365 ntBASIC19.53■□□□□ 0.72
HMGA1P17096 ZNF706-206ENST00000519744 785 ntTSL 3 BASIC19.53■□□□□ 0.72
HMGA1P17096 MFGE8-203ENST00000542878 1172 ntTSL 2 BASIC19.53■□□□□ 0.72
HMGA1P17096 AC010240.3-201ENST00000607688 395 ntBASIC19.53■□□□□ 0.72
HMGA1P17096 SMIM20-205ENST00000614775 1190 ntTSL 5 BASIC19.53■□□□□ 0.72
HMGA1P17096 CADM1-222ENST00000616271 1246 ntTSL 5 BASIC19.53■□□□□ 0.72
HMGA1P17096 LETM1-201ENST00000302787 5462 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
HMGA1P17096 LAG3-201ENST00000203629 1974 ntAPPRIS P2 TSL 1 (best) BASIC19.53■□□□□ 0.72
HMGA1P17096 FAM228B-210ENST00000615575 1357 ntAPPRIS P3 TSL 5 BASIC19.53■□□□□ 0.72
HMGA1P17096 WNT6-201ENST00000233948 1703 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
HMGA1P17096 AC006333.2-201ENST00000607957 2099 ntBASIC19.53■□□□□ 0.72
HMGA1P17096 ITPKC-201ENST00000263370 3385 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
HMGA1P17096 ECE1-205ENST00000436918 2328 ntTSL 2 BASIC19.52■□□□□ 0.72
HMGA1P17096 STEAP1B-201ENST00000404369 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC19.52■□□□□ 0.72
HMGA1P17096 TMEM191A-208ENST00000450925 1961 ntTSL 2 BASIC19.52■□□□□ 0.72
HMGA1P17096 NOP14-AS1-202ENST00000505731 1999 ntTSL 2 BASIC19.52■□□□□ 0.72
HMGA1P17096 DGKZ-214ENST00000527911 3337 ntAPPRIS ALT2 TSL 1 (best) BASIC19.52■□□□□ 0.72
HMGA1P17096 AC034236.2-201ENST00000606662 1610 ntBASIC19.52■□□□□ 0.72
HMGA1P17096 UBE2K-203ENST00000445950 2175 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
HMGA1P17096 MRGPRF-201ENST00000309099 2295 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
HMGA1P17096 HEBP2-201ENST00000367697 844 ntTSL 2 BASIC19.52■□□□□ 0.72
HMGA1P17096 AC116353.4-201ENST00000507279 576 ntTSL 4 BASIC19.52■□□□□ 0.72
HMGA1P17096 LINC00910-203ENST00000587874 544 ntTSL 4 BASIC19.52■□□□□ 0.72
HMGA1P17096 NTF4-201ENST00000593537 932 ntAPPRIS P1 BASIC19.52■□□□□ 0.72
HMGA1P17096 AL136038.4-201ENST00000603606 1261 ntBASIC19.52■□□□□ 0.72
HMGA1P17096 IFNL4-202ENST00000616270 1132 ntAPPRIS ALT2 TSL 1 (best) BASIC19.52■□□□□ 0.72
HMGA1P17096 SSX2IP-210ENST00000605755 1933 ntTSL 2 BASIC19.52■□□□□ 0.72
HMGA1P17096 C15orf56-202ENST00000623360 2129 ntTSL 2 BASIC19.52■□□□□ 0.72
HMGA1P17096 BAZ1A-201ENST00000358716 5920 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
HMGA1P17096 INPPL1-201ENST00000298229 4733 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
HMGA1P17096 EDNRA-206ENST00000511804 1569 ntTSL 2 BASIC19.52■□□□□ 0.71
HMGA1P17096 ERMP1-202ENST00000339450 5376 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
HMGA1P17096 DIO1-201ENST00000322679 1658 ntTSL 1 (best) BASIC19.52■□□□□ 0.71
HMGA1P17096 DIO1-217ENST00000617230 1656 ntTSL 5 BASIC19.52■□□□□ 0.71
HMGA1P17096 FHL1-219ENST00000618438 2178 ntTSL 3 BASIC19.51■□□□□ 0.71
HMGA1P17096 GSN-204ENST00000373818 2657 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
HMGA1P17096 ACBD5-201ENST00000375888 1747 ntAPPRIS ALT2 TSL 5 BASIC19.51■□□□□ 0.71
HMGA1P17096 FADS2-209ENST00000521849 1703 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
HMGA1P17096 CCSAP-201ENST00000284617 5121 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
HMGA1P17096 ANKS6-201ENST00000353234 7164 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
HMGA1P17096 PAN3-201ENST00000380958 2833 ntAPPRIS P2 TSL 5 BASIC19.51■□□□□ 0.71
HMGA1P17096 PHF2-201ENST00000359246 5569 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
HMGA1P17096 NDUFA12-201ENST00000327772 635 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
HMGA1P17096 DMKN-212ENST00000443640 842 ntAPPRIS ALT2 TSL 5 BASIC19.51■□□□□ 0.71
HMGA1P17096 ACY1-210ENST00000494103 1298 ntTSL 3 BASIC19.51■□□□□ 0.71
HMGA1P17096 TOLLIP-AS1-201ENST00000530897 939 ntBASIC19.51■□□□□ 0.71
HMGA1P17096 ANKRD34C-AS1-201ENST00000557790 594 ntTSL 3 BASIC19.51■□□□□ 0.71
HMGA1P17096 LINC00092-202ENST00000580908 580 ntTSL 2 BASIC19.51■□□□□ 0.71
HMGA1P17096 ATP6V1G2-205ENST00000303892 1588 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
HMGA1P17096 AP5S1-202ENST00000379567 1791 ntAPPRIS P1 TSL 2 BASIC19.51■□□□□ 0.71
HMGA1P17096 SEMA3B-202ENST00000418576 1765 ntTSL 2 BASIC19.51■□□□□ 0.71
HMGA1P17096 PRR23B-201ENST00000329447 1896 ntAPPRIS P1 BASIC19.51■□□□□ 0.71
HMGA1P17096 SARAF-214ENST00000545648 1976 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
HMGA1P17096 STIM2-211ENST00000639195 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC19.51■□□□□ 0.71
HMGA1P17096 NHLRC1-201ENST00000340650 2248 ntAPPRIS P1 BASIC19.51■□□□□ 0.71
HMGA1P17096 DNASE1L2-201ENST00000320700 1326 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
HMGA1P17096 LDHD-201ENST00000300051 2067 ntAPPRIS P3 TSL 1 (best) BASIC19.5■□□□□ 0.71
HMGA1P17096 NDRG2-227ENST00000554143 1980 ntAPPRIS ALT1 TSL 2 BASIC19.5■□□□□ 0.71
HMGA1P17096 MFSD10-202ENST00000355443 1753 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
HMGA1P17096 AL162741.1-201ENST00000565563 1558 ntBASIC19.5■□□□□ 0.71
HMGA1P17096 ZNF655-203ENST00000357864 1370 ntTSL 2 BASIC19.5■□□□□ 0.71
HMGA1P17096 MIR662-201ENST00000384847 95 ntBASIC19.5■□□□□ 0.71
HMGA1P17096 AL603832.1-201ENST00000421943 449 ntTSL 5 BASIC19.5■□□□□ 0.71
HMGA1P17096 ATP5G2P1-201ENST00000433580 426 ntBASIC19.5■□□□□ 0.71
HMGA1P17096 LINC02106-201ENST00000506534 606 ntTSL 2 BASIC19.5■□□□□ 0.71
HMGA1P17096 AC020558.2-201ENST00000582325 795 ntTSL 3 BASIC19.5■□□□□ 0.71
HMGA1P17096 AC011498.5-201ENST00000592027 486 ntBASIC19.5■□□□□ 0.71
HMGA1P17096 AC034238.1-212ENST00000596137 723 ntTSL 5 BASIC19.5■□□□□ 0.71
HMGA1P17096 AC124016.1-202ENST00000609575 619 ntTSL 2 BASIC19.5■□□□□ 0.71
HMGA1P17096 NPAP1P7-201ENST00000613027 823 ntBASIC19.5■□□□□ 0.71
HMGA1P17096 WDR6-223ENST00000627177 207 ntTSL 2 BASIC19.5■□□□□ 0.71
HMGA1P17096 ETV7-202ENST00000340181 1719 ntAPPRIS P3 TSL 1 (best) BASIC19.5■□□□□ 0.71
HMGA1P17096 LAD1-202ENST00000391967 2906 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
HMGA1P17096 LINC00634-201ENST00000381348 1510 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
HMGA1P17096 ATF5-201ENST00000423777 2069 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
HMGA1P17096 SLC35G2-202ENST00000446465 2060 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
HMGA1P17096 ABCC6-209ENST00000640696 1893 ntTSL 5 BASIC19.5■□□□□ 0.71
HMGA1P17096 EGFR-202ENST00000342916 2239 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
HMGA1P17096 ST6GALNAC4-201ENST00000335791 1691 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
HMGA1P17096 OCSTAMP-201ENST00000279028 2043 ntAPPRIS P1 TSL 5 BASIC19.49■□□□□ 0.71
HMGA1P17096 PPP1R12C-202ENST00000435544 2363 ntTSL 2 BASIC19.49■□□□□ 0.71
HMGA1P17096 ZNF420-201ENST00000304239 1945 ntTSL 2 BASIC19.49■□□□□ 0.71
HMGA1P17096 AGO3-202ENST00000324350 1726 ntTSL 2 BASIC19.49■□□□□ 0.71
HMGA1P17096 ZNF579-201ENST00000325421 2899 ntAPPRIS P1 TSL 2 BASIC19.49■□□□□ 0.71
HMGA1P17096 ELOB-202ENST00000409477 997 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
HMGA1P17096 PLAC8-202ENST00000411416 786 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
HMGA1P17096 HCG4P8-203ENST00000443049 980 ntBASIC19.49■□□□□ 0.71
HMGA1P17096 VCX3B-203ENST00000444481 812 ntAPPRIS ALT2 TSL 5 BASIC19.49■□□□□ 0.71
HMGA1P17096 AP1S2-206ENST00000545766 576 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
HMGA1P17096 AC010463.1-201ENST00000596542 1207 ntAPPRIS P1 TSL 2 BASIC19.49■□□□□ 0.71
HMGA1P17096 VCX3A-203ENST00000612369 812 ntAPPRIS ALT2 TSL 5 BASIC19.49■□□□□ 0.71
HMGA1P17096 Metazoa_SRP.33-201ENST00000613468 285 ntBASIC19.49■□□□□ 0.71
HMGA1P17096 AL360181.3-201ENST00000468317 1605 ntAPPRIS P1 TSL 5 BASIC19.49■□□□□ 0.71
HMGA1P17096 CNTNAP3B-202ENST00000341990 2666 ntTSL 2 BASIC19.49■□□□□ 0.71
Retrieved 100 of 98,524 protein–RNA pairs in 21.9 ms