Protein–RNA interactions for Protein: P09017

HOXC4, Homeobox protein Hox-C4, humanhuman

Predicted RBP Predictions only

Length 264 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC4P09017 AC010240.3-201ENST00000607688 395 ntBASIC18.37■□□□□ 0.53
HOXC4P09017 AL157888.1-201ENST00000631930 593 ntBASIC18.37■□□□□ 0.53
HOXC4P09017 FBXL22-204ENST00000638704 729 ntAPPRIS ALT2 TSL 2 BASIC18.37■□□□□ 0.53
HOXC4P09017 AC083906.6-201ENST00000641366 219 ntBASIC18.37■□□□□ 0.53
HOXC4P09017 AC064853.5-201ENST00000641976 258 ntAPPRIS P1 BASIC18.37■□□□□ 0.53
HOXC4P09017 WNT5B-203ENST00000537031 1437 ntAPPRIS P1 TSL 2 BASIC18.37■□□□□ 0.53
HOXC4P09017 HDAC11-221ENST00000522202 1559 ntAPPRIS ALT2 TSL 2 BASIC18.37■□□□□ 0.53
HOXC4P09017 MFSD10-202ENST00000355443 1753 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
HOXC4P09017 PRR23B-201ENST00000329447 1896 ntAPPRIS P1 BASIC18.37■□□□□ 0.53
HOXC4P09017 P2RX2-206ENST00000389110 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
HOXC4P09017 SMPD1-203ENST00000527275 2188 ntAPPRIS P3 TSL 2 BASIC18.37■□□□□ 0.53
HOXC4P09017 BX005266.2-202ENST00000446626 2245 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
HOXC4P09017 KMT5C-201ENST00000255613 2308 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
HOXC4P09017 ATXN7L2-202ENST00000369870 2318 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
HOXC4P09017 TEX22-201ENST00000451127 2571 ntAPPRIS P1 TSL 2 BASIC18.37■□□□□ 0.53
HOXC4P09017 SYNDIG1L-201ENST00000331628 2607 ntAPPRIS P1 TSL 5 BASIC18.36■□□□□ 0.53
HOXC4P09017 HRK-201ENST00000257572 5789 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
HOXC4P09017 FAM46B-201ENST00000289166 2368 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
HOXC4P09017 AC104581.1-201ENST00000324348 2852 ntAPPRIS P1 TSL 2 BASIC18.36■□□□□ 0.53
HOXC4P09017 NRXN2-203ENST00000377551 6373 ntAPPRIS P3 TSL 1 (best) BASIC18.36■□□□□ 0.53
HOXC4P09017 SYCE1L-201ENST00000378644 858 ntAPPRIS P2 TSL 5 BASIC18.36■□□□□ 0.53
HOXC4P09017 AANAT-202ENST00000392492 1005 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
HOXC4P09017 PLPP5-202ENST00000422581 853 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
HOXC4P09017 C7orf49-202ENST00000424142 1738 ntTSL 2 BASIC18.36■□□□□ 0.53
HOXC4P09017 UPK3BP1-201ENST00000428678 509 ntBASIC18.36■□□□□ 0.53
HOXC4P09017 SPDYE13P-201ENST00000445314 798 ntBASIC18.36■□□□□ 0.53
HOXC4P09017 AC092597.1-201ENST00000487352 616 ntBASIC18.36■□□□□ 0.53
HOXC4P09017 MMAB-204ENST00000537236 1342 ntTSL 3 BASIC18.36■□□□□ 0.53
HOXC4P09017 NEK2-205ENST00000540251 1318 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
HOXC4P09017 ZNF575-205ENST00000601282 1086 ntAPPRIS P1 TSL 2 BASIC18.36■□□□□ 0.53
HOXC4P09017 CLN6-214ENST00000636314 442 ntTSL 3 BASIC18.36■□□□□ 0.53
HOXC4P09017 ZNF316-201ENST00000382252 5392 ntAPPRIS P1 TSL 5 BASIC18.36■□□□□ 0.53
HOXC4P09017 GPR157-201ENST00000377411 5265 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
HOXC4P09017 HSPD1-202ENST00000388968 2455 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
HOXC4P09017 NRXN2-205ENST00000409571 6381 ntAPPRIS ALT2 TSL 5 BASIC18.35■□□□□ 0.53
HOXC4P09017 ABCC6-209ENST00000640696 1893 ntTSL 5 BASIC18.35■□□□□ 0.53
HOXC4P09017 AP5S1-202ENST00000379567 1791 ntAPPRIS P1 TSL 2 BASIC18.35■□□□□ 0.53
HOXC4P09017 AC012615.6-201ENST00000593201 1697 ntTSL 2 BASIC18.35■□□□□ 0.53
HOXC4P09017 CDX4-201ENST00000373514 1515 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
HOXC4P09017 CYP51A1P1-201ENST00000492267 1507 ntBASIC18.35■□□□□ 0.53
HOXC4P09017 ANKRD13D-202ENST00000447274 2881 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
HOXC4P09017 TWIST2-202ENST00000612363 1404 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
HOXC4P09017 ZACN-201ENST00000334586 1335 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
HOXC4P09017 FAM43B-201ENST00000332947 2572 ntAPPRIS P1 BASIC18.35■□□□□ 0.53
HOXC4P09017 HOPX-201ENST00000317745 1129 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
HOXC4P09017 NDUFA1-201ENST00000371437 766 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
HOXC4P09017 NMRK1-202ENST00000376808 1121 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
HOXC4P09017 IFI27L1-206ENST00000554562 571 ntTSL 3 BASIC18.35■□□□□ 0.53
HOXC4P09017 AC015961.2-201ENST00000589281 701 ntTSL 3 BASIC18.35■□□□□ 0.53
HOXC4P09017 CADM1-222ENST00000616271 1246 ntTSL 5 BASIC18.35■□□□□ 0.53
HOXC4P09017 AL807752.6-202ENST00000622933 765 ntAPPRIS P5 TSL 3 BASIC18.35■□□□□ 0.53
HOXC4P09017 ECE1-205ENST00000436918 2328 ntTSL 2 BASIC18.35■□□□□ 0.53
HOXC4P09017 AL161938.1-201ENST00000569833 2180 ntBASIC18.35■□□□□ 0.53
HOXC4P09017 CCT5-214ENST00000515676 1997 ntTSL 2 BASIC18.35■□□□□ 0.53
HOXC4P09017 JPH2-201ENST00000342272 1923 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
HOXC4P09017 NLRP6-201ENST00000312165 2679 ntAPPRIS P3 TSL 1 (best) BASIC18.35■□□□□ 0.53
HOXC4P09017 NFYC-AS1-201ENST00000606277 1687 ntBASIC18.34■□□□□ 0.53
HOXC4P09017 WRB-201ENST00000333781 1616 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
HOXC4P09017 NETO1-207ENST00000583169 2357 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
HOXC4P09017 ATP6V1G2-205ENST00000303892 1588 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
HOXC4P09017 SUSD1-204ENST00000374270 3124 ntAPPRIS P3 TSL 1 (best) BASIC18.34■□□□□ 0.53
HOXC4P09017 METTL5-207ENST00000410097 1370 ntTSL 2 BASIC18.34■□□□□ 0.53
HOXC4P09017 NTMT1-203ENST00000372483 1315 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
HOXC4P09017 C11orf80-214ENST00000532565 1948 ntAPPRIS ALT2 TSL 5 BASIC18.34■□□□□ 0.53
HOXC4P09017 TMEM190-201ENST00000291934 593 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
HOXC4P09017 AC115618.1-201ENST00000376775 549 ntTSL 3 BASIC18.34■□□□□ 0.53
HOXC4P09017 CATIP-AS1-202ENST00000441749 480 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
HOXC4P09017 PDZD7-203ENST00000470414 1057 ntTSL 2 BASIC18.34■□□□□ 0.53
HOXC4P09017 SELENOS-203ENST00000526049 1188 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
HOXC4P09017 AC079602.3-201ENST00000623931 403 ntBASIC18.34■□□□□ 0.53
HOXC4P09017 CLN3-259ENST00000637551 1083 ntTSL 5 BASIC18.34■□□□□ 0.53
HOXC4P09017 LRRC4B-201ENST00000389201 2958 ntAPPRIS P1 TSL 2 BASIC18.34■□□□□ 0.53
HOXC4P09017 Z98044.1-201ENST00000632503 1764 ntBASIC18.34■□□□□ 0.53
HOXC4P09017 CA7-202ENST00000394069 1713 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
HOXC4P09017 CLDND1-203ENST00000394181 2170 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
HOXC4P09017 SIGIRR-220ENST00000531205 1649 ntTSL 2 BASIC18.34■□□□□ 0.53
HOXC4P09017 YAP1-210ENST00000615667 5398 ntAPPRIS ALT2 TSL 5 BASIC18.34■□□□□ 0.53
HOXC4P09017 SLC16A3-221ENST00000617373 2048 ntAPPRIS P1 TSL 5 BASIC18.33■□□□□ 0.53
HOXC4P09017 SLC16A3-222ENST00000619321 2015 ntAPPRIS P1 TSL 5 BASIC18.33■□□□□ 0.53
HOXC4P09017 ZNF420-201ENST00000304239 1945 ntTSL 2 BASIC18.33■□□□□ 0.53
HOXC4P09017 CTNNBL1-201ENST00000361383 1925 ntAPPRIS P2 TSL 1 (best) BASIC18.33■□□□□ 0.53
HOXC4P09017 CORO1B-202ENST00000393893 1931 ntAPPRIS P1 TSL 5 BASIC18.33■□□□□ 0.53
HOXC4P09017 PDZD3-203ENST00000525131 1882 ntTSL 2 BASIC18.33■□□□□ 0.53
HOXC4P09017 FAM50A-202ENST00000393600 1352 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
HOXC4P09017 MIR4300HG-201ENST00000500502 1397 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
HOXC4P09017 AL357033.4-201ENST00000617703 1807 ntBASIC18.33■□□□□ 0.53
HOXC4P09017 WFDC1-203ENST00000568638 1319 ntAPPRIS P1 TSL 2 BASIC18.33■□□□□ 0.53
HOXC4P09017 ALDH3B1-206ENST00000615463 1300 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
HOXC4P09017 AQP11-201ENST00000313578 2152 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
HOXC4P09017 AGO3-202ENST00000324350 1726 ntTSL 2 BASIC18.33■□□□□ 0.52
HOXC4P09017 GUCA1B-201ENST00000230361 1113 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
HOXC4P09017 FAM86B2-202ENST00000309608 806 ntTSL 3 BASIC18.33■□□□□ 0.52
HOXC4P09017 AP000593.1-201ENST00000393668 712 ntBASIC18.33■□□□□ 0.52
HOXC4P09017 SMYD3-204ENST00000403792 1209 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
HOXC4P09017 DMKN-212ENST00000443640 842 ntAPPRIS ALT2 TSL 5 BASIC18.33■□□□□ 0.52
HOXC4P09017 AF186192.2-201ENST00000524514 423 ntTSL 3 BASIC18.33■□□□□ 0.52
HOXC4P09017 RAP1B-229ENST00000543393 874 ntTSL 3 BASIC18.33■□□□□ 0.52
HOXC4P09017 AC009065.1-201ENST00000564055 1225 ntBASIC18.33■□□□□ 0.52
HOXC4P09017 AC132938.3-201ENST00000579095 357 ntTSL 2 BASIC18.33■□□□□ 0.52
HOXC4P09017 AC092902.2-222ENST00000626312 568 ntTSL 5 BASIC18.33■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 22.3 ms