Protein–RNA interactions for Protein: O75112

LDB3, LIM domain-binding protein 3, humanhuman

Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3O75112 AP003041.3-201ENST00000527151 707 ntBASIC17.71■□□□□ 0.43
LDB3O75112 CBLN1-202ENST00000536749 718 ntAPPRIS P1 TSL 5 BASIC17.71■□□□□ 0.43
LDB3O75112 PSMD9-208ENST00000542602 516 ntTSL 3 BASIC17.71■□□□□ 0.43
LDB3O75112 AL353719.1-201ENST00000566847 864 ntBASIC17.71■□□□□ 0.43
LDB3O75112 PNMA8A-203ENST00000602246 572 ntAPPRIS ALT2 TSL 4 BASIC17.71■□□□□ 0.43
LDB3O75112 KLF13-201ENST00000307145 6825 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
LDB3O75112 SLC25A47-201ENST00000361529 1738 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
LDB3O75112 IKBKG-214ENST00000618670 2069 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
LDB3O75112 CCDC106-201ENST00000308964 1546 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
LDB3O75112 ROR1-201ENST00000371079 5832 ntAPPRIS P2 TSL 1 (best) BASIC17.71■□□□□ 0.43
LDB3O75112 ULK2-201ENST00000361658 3908 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
LDB3O75112 AC092338.2-201ENST00000568827 1415 ntBASIC17.71■□□□□ 0.43
LDB3O75112 IFNL4-203ENST00000634680 1421 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.43
LDB3O75112 ADPGK-201ENST00000311669 2557 ntAPPRIS P1 TSL 2 BASIC17.71■□□□□ 0.43
LDB3O75112 MFSD10-202ENST00000355443 1753 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
LDB3O75112 STX5-202ENST00000377897 1785 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
LDB3O75112 ADAP2-201ENST00000330889 2934 ntAPPRIS P2 TSL 1 (best) BASIC17.71■□□□□ 0.43
LDB3O75112 TCTN1-223ENST00000550703 2149 ntTSL 2 BASIC17.71■□□□□ 0.42
LDB3O75112 TMEM235-202ENST00000421688 2490 ntAPPRIS P1 TSL 5 BASIC17.71■□□□□ 0.42
LDB3O75112 TEX13A-202ENST00000609007 1349 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.42
LDB3O75112 DIO1-201ENST00000322679 1658 ntTSL 1 (best) BASIC17.71■□□□□ 0.42
LDB3O75112 DIO1-217ENST00000617230 1656 ntTSL 5 BASIC17.71■□□□□ 0.42
LDB3O75112 YY1AP1-213ENST00000405763 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.42
LDB3O75112 AP2M1-201ENST00000292807 1931 ntAPPRIS P4 TSL 5 BASIC17.7■□□□□ 0.42
LDB3O75112 PSRC1-202ENST00000369904 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
LDB3O75112 HDAC11-221ENST00000522202 1559 ntAPPRIS ALT2 TSL 2 BASIC17.7■□□□□ 0.42
LDB3O75112 AD000671.2-201ENST00000589807 1925 ntAPPRIS P1 TSL 2 BASIC17.7■□□□□ 0.42
LDB3O75112 GDPD1-201ENST00000284116 1821 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
LDB3O75112 CELF2-217ENST00000638035 1849 ntAPPRIS P3 TSL 5 BASIC17.7■□□□□ 0.42
LDB3O75112 NBPF9-209ENST00000621645 5632 ntAPPRIS ALT2 TSL 2 BASIC17.7■□□□□ 0.42
LDB3O75112 BCL7A-203ENST00000538010 6247 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
LDB3O75112 CADPS2-202ENST00000334010 6045 ntAPPRIS ALT2 TSL 5 BASIC17.7■□□□□ 0.42
LDB3O75112 AVL9-209ENST00000640103 1367 ntTSL 5 BASIC17.7■□□□□ 0.42
LDB3O75112 AC096719.1-201ENST00000510705 1874 ntTSL 5 BASIC17.7■□□□□ 0.42
LDB3O75112 ING1-202ENST00000338450 1189 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
LDB3O75112 TMUB1-205ENST00000482202 899 ntAPPRIS P1 TSL 3 BASIC17.7■□□□□ 0.42
LDB3O75112 AC128688.1-201ENST00000487626 519 ntBASIC17.7■□□□□ 0.42
LDB3O75112 CHCHD6-204ENST00000508789 1159 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
LDB3O75112 HRASLS5-205ENST00000539221 1167 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
LDB3O75112 AIPL1-209ENST00000575265 2111 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
LDB3O75112 AC006942.1-201ENST00000600669 520 ntTSL 2 BASIC17.7■□□□□ 0.42
LDB3O75112 AC215522.2-202ENST00000633163 1143 ntTSL 5 BASIC17.7■□□□□ 0.42
LDB3O75112 SAYSD1-201ENST00000229903 2020 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
LDB3O75112 TNXA-203ENST00000507684 2038 ntBASIC17.7■□□□□ 0.42
LDB3O75112 SLC39A4-201ENST00000276833 2297 ntTSL 2 BASIC17.7■□□□□ 0.42
LDB3O75112 P3H4-201ENST00000355468 2791 ntAPPRIS P2 TSL 2 BASIC17.7■□□□□ 0.42
LDB3O75112 GPAT2P1-201ENST00000444924 1672 ntBASIC17.7■□□□□ 0.42
LDB3O75112 RPS6KB1-204ENST00000443572 1913 ntTSL 2 BASIC17.7■□□□□ 0.42
LDB3O75112 TIGD6-202ENST00000515406 2429 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
LDB3O75112 P2RY6-212ENST00000618468 2431 ntAPPRIS P1 TSL 3 BASIC17.7■□□□□ 0.42
LDB3O75112 PCSK7-201ENST00000320934 4649 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
LDB3O75112 P2RX5-203ENST00000547178 1998 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
LDB3O75112 MTSS1-203ENST00000431961 1711 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
LDB3O75112 RUBCN-206ENST00000449205 1603 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
LDB3O75112 SLC27A3-204ENST00000368661 2410 ntAPPRIS P2 TSL 1 (best) BASIC17.69■□□□□ 0.42
LDB3O75112 SLC31A2-201ENST00000259392 1785 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
LDB3O75112 RCC2P3-201ENST00000418112 1537 ntBASIC17.69■□□□□ 0.42
LDB3O75112 CHRM4-201ENST00000433765 1511 ntAPPRIS P1 BASIC17.69■□□□□ 0.42
LDB3O75112 C12orf42-205ENST00000548048 1532 ntAPPRIS ALT2 TSL 5 BASIC17.69■□□□□ 0.42
LDB3O75112 LGALS7B-201ENST00000314980 483 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
LDB3O75112 KRT17P2-202ENST00000326333 1174 ntTSL 2 BASIC17.69■□□□□ 0.42
LDB3O75112 AIF1L-203ENST00000372298 849 ntTSL 3 BASIC17.69■□□□□ 0.42
LDB3O75112 TMEM240-201ENST00000378733 718 ntAPPRIS P1 TSL 2 BASIC17.69■□□□□ 0.42
LDB3O75112 DHRS4L2-202ENST00000397071 1117 ntTSL 2 BASIC17.69■□□□□ 0.42
LDB3O75112 MUC1-211ENST00000438413 927 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
LDB3O75112 STXBP1-203ENST00000476182 566 ntTSL 5 BASIC17.69■□□□□ 0.42
LDB3O75112 BNIP3L-204ENST00000520409 739 ntTSL 2 BASIC17.69■□□□□ 0.42
LDB3O75112 RAB2A-211ENST00000531289 1058 ntTSL 2 BASIC17.69■□□□□ 0.42
LDB3O75112 IGHMBP2-205ENST00000539224 785 ntTSL 3 BASIC17.69■□□□□ 0.42
LDB3O75112 AL158151.3-201ENST00000599172 696 ntTSL 5 BASIC17.69■□□□□ 0.42
LDB3O75112 PHOSPHO2-206ENST00000616481 1252 ntAPPRIS P1 TSL 3 BASIC17.69■□□□□ 0.42
LDB3O75112 PHOSPHO2-208ENST00000617738 1053 ntAPPRIS P1 TSL 2 BASIC17.69■□□□□ 0.42
LDB3O75112 AL590627.2-201ENST00000637510 144 ntTSL 5 BASIC17.69■□□□□ 0.42
LDB3O75112 ARHGAP23-222ENST00000622683 5964 ntAPPRIS P2 TSL 5 BASIC17.69■□□□□ 0.42
LDB3O75112 CCNC-207ENST00000518714 1426 ntTSL 5 BASIC17.69■□□□□ 0.42
LDB3O75112 NOM1-201ENST00000275820 6077 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
LDB3O75112 MAP4K4-204ENST00000350198 7316 ntTSL 5 BASIC17.69■□□□□ 0.42
LDB3O75112 UNG-202ENST00000336865 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
LDB3O75112 CIDEB-202ENST00000336557 2409 ntAPPRIS P1 TSL 2 BASIC17.69■□□□□ 0.42
LDB3O75112 SLC6A7-203ENST00000524041 2431 ntTSL 5 BASIC17.69■□□□□ 0.42
LDB3O75112 FSTL1-201ENST00000295633 5943 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
LDB3O75112 FGFR1-203ENST00000341462 6054 ntTSL 5 BASIC17.69■□□□□ 0.42
LDB3O75112 KRT8P32-201ENST00000512863 1461 ntBASIC17.69■□□□□ 0.42
LDB3O75112 HAUS4-218ENST00000555986 1626 ntTSL 5 BASIC17.69■□□□□ 0.42
LDB3O75112 ZNF623-203ENST00000526926 2612 ntAPPRIS ALT2 TSL 2 BASIC17.68■□□□□ 0.42
LDB3O75112 KCNQ5-203ENST00000355635 6623 ntAPPRIS ALT1 TSL 5 BASIC17.68■□□□□ 0.42
LDB3O75112 GPR83-202ENST00000539203 1909 ntTSL 5 BASIC17.68■□□□□ 0.42
LDB3O75112 KLHL23-201ENST00000272797 2087 ntAPPRIS P1 TSL 2 BASIC17.68■□□□□ 0.42
LDB3O75112 CD72-201ENST00000259633 1548 ntAPPRIS P2 TSL 1 (best) BASIC17.68■□□□□ 0.42
LDB3O75112 ZNF302-214ENST00000613363 2893 ntAPPRIS ALT2 TSL 4 BASIC17.68■□□□□ 0.42
LDB3O75112 HSCB-201ENST00000216027 1114 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
LDB3O75112 LSM12-201ENST00000293406 2308 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
LDB3O75112 POU3F2-201ENST00000328345 4879 ntAPPRIS P1 BASIC17.68■□□□□ 0.42
LDB3O75112 CKS1B-203ENST00000368439 912 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
LDB3O75112 KHDC1-202ENST00000370384 1430 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
LDB3O75112 ERICH4-201ENST00000378187 946 ntAPPRIS P1 TSL 5 BASIC17.68■□□□□ 0.42
LDB3O75112 HOXD12-201ENST00000404162 841 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
LDB3O75112 AC211429.1-201ENST00000415277 523 ntBASIC17.68■□□□□ 0.42
LDB3O75112 AC012618.3-203ENST00000426044 917 ntTSL 2 BASIC17.68■□□□□ 0.42
LDB3O75112 ZNF534-203ENST00000432303 956 ntTSL 2 BASIC17.68■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 24.7 ms