Protein–RNA interactions for Protein: O60902

SHOX2, Short stature homeobox protein 2, humanhuman

Predicted RBP Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2O60902 CTSA-204ENST00000372484 2149 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
SHOX2O60902 GATA1-202ENST00000376670 1497 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
SHOX2O60902 EIPR1-201ENST00000382125 1766 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
SHOX2O60902 ARHGAP4-204ENST00000393721 2721 ntTSL 5 BASIC18.87■□□□□ 0.61
SHOX2O60902 RAMP1-203ENST00000404910 857 ntTSL 2 BASIC18.87■□□□□ 0.61
SHOX2O60902 FAXDC2-211ENST00000520968 558 ntTSL 4 BASIC18.87■□□□□ 0.61
SHOX2O60902 C18orf8-208ENST00000590868 2002 ntTSL 2 BASIC18.87■□□□□ 0.61
SHOX2O60902 AL023806.1-201ENST00000603994 1649 ntBASIC18.87■□□□□ 0.61
SHOX2O60902 TLE3-201ENST00000317509 5207 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
SHOX2O60902 TLK2-201ENST00000326270 3512 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
SHOX2O60902 HIC1-202ENST00000399849 3156 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
SHOX2O60902 KIAA0895-208ENST00000440378 2441 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
SHOX2O60902 TP53BP2-202ENST00000391878 4741 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
SHOX2O60902 PCNP-201ENST00000265260 2342 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
SHOX2O60902 RHBDD3-201ENST00000216085 1794 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
SHOX2O60902 TUBA8-201ENST00000316027 1518 ntTSL 2 BASIC18.86■□□□□ 0.61
SHOX2O60902 HSD11B1L-219ENST00000581893 1540 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
SHOX2O60902 SLMAP-201ENST00000295951 5433 ntAPPRIS P1 TSL 5 BASIC18.86■□□□□ 0.61
SHOX2O60902 MRPL46-201ENST00000312475 1019 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
SHOX2O60902 SLC29A2-206ENST00000546034 2509 ntAPPRIS P1 TSL 5 BASIC18.86■□□□□ 0.61
SHOX2O60902 GALNT9-201ENST00000328957 2410 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
SHOX2O60902 SLC29A1-208ENST00000393844 2326 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
SHOX2O60902 PAX7-201ENST00000375375 2260 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
SHOX2O60902 METTL9-201ENST00000358154 3256 ntAPPRIS P3 TSL 1 (best) BASIC18.86■□□□□ 0.61
SHOX2O60902 TFAP2E-201ENST00000373235 2189 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
SHOX2O60902 INO80E-207ENST00000563197 2103 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
SHOX2O60902 CNPPD1-201ENST00000360507 2060 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
SHOX2O60902 TBXAS1-206ENST00000425687 2080 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
SHOX2O60902 RUNX1-203ENST00000358356 2720 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
SHOX2O60902 CICP6-201ENST00000457191 2729 ntBASIC18.86■□□□□ 0.61
SHOX2O60902 PARD3-201ENST00000340077 3518 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
SHOX2O60902 SLC4A4-201ENST00000264485 5852 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
SHOX2O60902 GDF5-201ENST00000374369 2383 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
SHOX2O60902 RAB34-203ENST00000395243 1597 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
SHOX2O60902 C18orf21-205ENST00000592875 1581 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
SHOX2O60902 B4GALT1-202ENST00000535206 1535 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
SHOX2O60902 TMED3-203ENST00000536821 2265 ntTSL 2 BASIC18.85■□□□□ 0.61
SHOX2O60902 PDLIM2-221ENST00000622702 1490 ntTSL 5 BASIC18.85■□□□□ 0.61
SHOX2O60902 FBXO7-201ENST00000266087 2195 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
SHOX2O60902 PITPNA-202ENST00000539476 3612 ntAPPRIS ALT1 TSL 5 BASIC18.85■□□□□ 0.61
SHOX2O60902 EVC-201ENST00000264956 6431 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
SHOX2O60902 COQ6-201ENST00000334571 2118 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
SHOX2O60902 CERKL-204ENST00000374970 1392 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
SHOX2O60902 DDAH2-211ENST00000375787 1330 ntAPPRIS P1 TSL 5 BASIC18.85■□□□□ 0.61
SHOX2O60902 CRTAC1-201ENST00000309155 1946 ntAPPRIS ALT2 TSL 1 (best) BASIC18.85■□□□□ 0.61
SHOX2O60902 RPLP0-201ENST00000228306 1257 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
SHOX2O60902 RRAS-201ENST00000246792 1044 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
SHOX2O60902 NMRAL1-202ENST00000404295 1233 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
SHOX2O60902 SPON2-203ENST00000431380 1802 ntAPPRIS P1 TSL 5 BASIC18.85■□□□□ 0.61
SHOX2O60902 C5orf30-201ENST00000319933 3049 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
SHOX2O60902 STOX1-201ENST00000298596 3377 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
SHOX2O60902 U2AF2-201ENST00000308924 1698 ntAPPRIS P3 TSL 1 (best) BASIC18.85■□□□□ 0.61
SHOX2O60902 TADA3-202ENST00000343450 2554 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
SHOX2O60902 POLR3E-203ENST00000418581 2529 ntTSL 2 BASIC18.84■□□□□ 0.61
SHOX2O60902 MFSD11-207ENST00000586622 2952 ntAPPRIS P1 TSL 5 BASIC18.84■□□□□ 0.61
SHOX2O60902 GTF3C5-201ENST00000342018 1905 ntTSL 5 BASIC18.84■□□□□ 0.61
SHOX2O60902 GPR35-204ENST00000430267 1399 ntAPPRIS ALT2 TSL 5 BASIC18.84■□□□□ 0.61
SHOX2O60902 MON1B-202ENST00000439557 1759 ntTSL 2 BASIC18.84■□□□□ 0.61
SHOX2O60902 CYP2F1-201ENST00000331105 1720 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
SHOX2O60902 PRELID3A-202ENST00000440960 1716 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
SHOX2O60902 ZNF853-201ENST00000457543 3857 ntAPPRIS P1 TSL 3 BASIC18.84■□□□□ 0.61
SHOX2O60902 FOXD2-201ENST00000334793 4675 ntAPPRIS P1 BASIC18.84■□□□□ 0.61
SHOX2O60902 PHLDA3-201ENST00000367309 896 ntAPPRIS P1 TSL 5 BASIC18.84■□□□□ 0.61
SHOX2O60902 LMCD1-AS1-204ENST00000446281 932 ntTSL 5 BASIC18.84■□□□□ 0.61
SHOX2O60902 MFSD11-216ENST00000590393 1141 ntBASIC18.84■□□□□ 0.61
SHOX2O60902 SRRM2-231ENST00000630499 1207 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
SHOX2O60902 SLC29A2-202ENST00000357440 2514 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
SHOX2O60902 TNFSF9-201ENST00000245817 1665 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
SHOX2O60902 GALNT16-204ENST00000553669 1629 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
SHOX2O60902 TMEM175-222ENST00000622959 1967 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
SHOX2O60902 SLC9A6-201ENST00000370695 4725 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
SHOX2O60902 WWOX-202ENST00000402655 1594 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
SHOX2O60902 KANK4-204ENST00000371153 4665 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
SHOX2O60902 SMC4-201ENST00000344722 5356 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
SHOX2O60902 NFATC2-205ENST00000609507 2662 ntAPPRIS ALT2 TSL 1 (best) BASIC18.84■□□□□ 0.61
SHOX2O60902 OTUB1-202ENST00000422031 2297 ntAPPRIS ALT1 TSL 5 BASIC18.84■□□□□ 0.61
SHOX2O60902 EN2-201ENST00000297375 3395 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
SHOX2O60902 HS6ST2-204ENST00000521489 2607 ntTSL 5 BASIC18.84■□□□□ 0.61
SHOX2O60902 PLEKHG5-206ENST00000377748 5221 ntAPPRIS ALT2 TSL 2 BASIC18.84■□□□□ 0.61
SHOX2O60902 PCGF6-202ENST00000369847 2230 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
SHOX2O60902 DBNDD2-206ENST00000372720 1481 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
SHOX2O60902 IRF7-202ENST00000348655 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC18.84■□□□□ 0.61
SHOX2O60902 USP39-201ENST00000323701 2177 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
SHOX2O60902 FAM66E-201ENST00000529252 1433 ntTSL 2 BASIC18.83■□□□□ 0.61
SHOX2O60902 FAM66B-201ENST00000529456 1432 ntTSL 2 BASIC18.83■□□□□ 0.61
SHOX2O60902 PFN2-203ENST00000452853 1780 ntAPPRIS ALT1 TSL 1 (best) BASIC18.83■□□□□ 0.61
SHOX2O60902 C10orf10-201ENST00000298295 2120 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
SHOX2O60902 PODXL-202ENST00000378555 2105 ntAPPRIS P3 TSL 1 (best) BASIC18.83■□□□□ 0.61
SHOX2O60902 LINC00921-202ENST00000573951 2468 ntTSL 2 BASIC18.83■□□□□ 0.61
SHOX2O60902 ETV4-211ENST00000591713 1727 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
SHOX2O60902 NCAPH2-205ENST00000420993 2037 ntAPPRIS P3 TSL 1 (best) BASIC18.83■□□□□ 0.61
SHOX2O60902 SLC25A51-202ENST00000377716 1691 ntAPPRIS P1 TSL 3 BASIC18.83■□□□□ 0.61
SHOX2O60902 ZNF48-206ENST00000622647 2695 ntTSL 4 BASIC18.83■□□□□ 0.61
SHOX2O60902 FICD-204ENST00000552695 3347 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
SHOX2O60902 CLPTM1-203ENST00000546079 2342 ntTSL 2 BASIC18.83■□□□□ 0.61
SHOX2O60902 ARNT-202ENST00000358595 4887 ntAPPRIS P3 TSL 1 (best) BASIC18.83■□□□□ 0.61
SHOX2O60902 KIAA1586-201ENST00000370733 2933 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
SHOX2O60902 JPH2-201ENST00000342272 1923 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
SHOX2O60902 FAM50B-202ENST00000380274 1932 ntAPPRIS P1 BASIC18.83■□□□□ 0.6
SHOX2O60902 LARP6-202ENST00000344870 527 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 27.3 ms