Protein–RNA interactions for Protein: O15457

MSH4, MutS protein homolog 4, humanhuman

Predictions only

Length 936 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4O15457 MTMR12-203ENST00000382142 5187 ntAPPRIS P3 TSL 1 (best) BASIC21.15■□□□□ 0.98
MSH4O15457 CTNNBL1-201ENST00000361383 1925 ntAPPRIS P2 TSL 1 (best) BASIC21.15■□□□□ 0.98
MSH4O15457 UTP18-201ENST00000225298 1894 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
MSH4O15457 CDV3-201ENST00000264993 3307 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
MSH4O15457 GAS6-201ENST00000327773 2490 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
MSH4O15457 CCDC106-201ENST00000308964 1546 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
MSH4O15457 GRIN1-208ENST00000371561 5149 ntTSL 1 (best) BASIC21.14■□□□□ 0.98
MSH4O15457 EDEM1-204ENST00000445686 1363 ntTSL 2 BASIC21.14■□□□□ 0.98
MSH4O15457 MGAT5B-201ENST00000301618 4486 ntAPPRIS P3 TSL 5 BASIC21.14■□□□□ 0.97
MSH4O15457 ARAP1-AS2-201ENST00000500163 1824 ntTSL 2 BASIC21.14■□□□□ 0.97
MSH4O15457 AZU1-201ENST00000233997 908 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
MSH4O15457 FUOM-201ENST00000278025 709 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
MSH4O15457 EDARADD-201ENST00000334232 858 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
MSH4O15457 MIR564-202ENST00000385049 94 ntBASIC21.14■□□□□ 0.97
MSH4O15457 MIEN1-201ENST00000394231 1006 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
MSH4O15457 CR769775.1-204ENST00000439760 747 ntTSL 5 BASIC21.14■□□□□ 0.97
MSH4O15457 EHMT1-211ENST00000482340 691 ntTSL 5 BASIC21.14■□□□□ 0.97
MSH4O15457 ZNF706-204ENST00000518336 501 ntAPPRIS P1 TSL 4 BASIC21.14■□□□□ 0.97
MSH4O15457 AC012213.1-202ENST00000523422 449 ntTSL 3 BASIC21.14■□□□□ 0.97
MSH4O15457 AL132780.2-201ENST00000557615 1021 ntTSL 3 BASIC21.14■□□□□ 0.97
MSH4O15457 AL441883.1-201ENST00000566170 1045 ntBASIC21.14■□□□□ 0.97
MSH4O15457 BDKRB1-204ENST00000611804 1085 ntAPPRIS P1 BASIC21.14■□□□□ 0.97
MSH4O15457 AC008073.3-201ENST00000610442 2281 ntAPPRIS P1 TSL 2 BASIC21.14■□□□□ 0.97
MSH4O15457 RAB7A-201ENST00000265062 2244 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
MSH4O15457 C7orf49-202ENST00000424142 1738 ntTSL 2 BASIC21.14■□□□□ 0.97
MSH4O15457 RBFOX1-204ENST00000422070 1684 ntTSL 2 BASIC21.14■□□□□ 0.97
MSH4O15457 UNG-202ENST00000336865 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC21.14■□□□□ 0.97
MSH4O15457 KCTD18-201ENST00000359878 2940 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
MSH4O15457 HS2ST1-202ENST00000370551 1585 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
MSH4O15457 SEPT2-203ENST00000391971 3315 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
MSH4O15457 STX17-212ENST00000534052 2424 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
MSH4O15457 FGFR1-241ENST00000619564 5482 ntTSL 5 BASIC21.14■□□□□ 0.97
MSH4O15457 PDLIM3-212ENST00000620787 2352 ntTSL 4 BASIC21.14■□□□□ 0.97
MSH4O15457 GLRB-207ENST00000541722 2765 ntTSL 5 BASIC21.14■□□□□ 0.97
MSH4O15457 ADORA2A-201ENST00000337539 2569 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
MSH4O15457 TAX1BP3-201ENST00000225525 1377 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
MSH4O15457 CCND3-204ENST00000414200 1724 ntTSL 2 BASIC21.13■□□□□ 0.97
MSH4O15457 MEF2B-201ENST00000409224 1683 ntTSL 2 BASIC21.13■□□□□ 0.97
MSH4O15457 YY1AP1-213ENST00000405763 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC21.13■□□□□ 0.97
MSH4O15457 MIR1224-201ENST00000408193 85 ntBASIC21.13■□□□□ 0.97
MSH4O15457 WDR45-218ENST00000473974 1077 ntTSL 5 BASIC21.13■□□□□ 0.97
MSH4O15457 AC009185.1-201ENST00000517634 911 ntTSL 3 BASIC21.13■□□□□ 0.97
MSH4O15457 BCL2L12-208ENST00000600947 633 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
MSH4O15457 AC064834.1-201ENST00000606986 503 ntTSL 3 BASIC21.13■□□□□ 0.97
MSH4O15457 ICA1-208ENST00000407906 1615 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
MSH4O15457 JPT1-203ENST00000409753 1605 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
MSH4O15457 CASKIN2-205ENST00000581870 1612 ntTSL 2 BASIC21.13■□□□□ 0.97
MSH4O15457 GIT1-201ENST00000225394 3768 ntAPPRIS P3 TSL 1 (best) BASIC21.13■□□□□ 0.97
MSH4O15457 EXOSC3-201ENST00000327304 1806 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
MSH4O15457 RASSF7-205ENST00000454668 1450 ntAPPRIS ALT2 TSL 1 (best) BASIC21.13■□□□□ 0.97
MSH4O15457 PDE9A-213ENST00000398236 1776 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
MSH4O15457 RNF212-202ENST00000382968 2335 ntAPPRIS P3 TSL 1 (best) BASIC21.12■□□□□ 0.97
MSH4O15457 THAP7-AS1-203ENST00000452284 2298 ntTSL 2 BASIC21.12■□□□□ 0.97
MSH4O15457 DHRSX-201ENST00000334651 2571 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
MSH4O15457 ANKRD13D-201ENST00000308440 2219 ntTSL 2 BASIC21.12■□□□□ 0.97
MSH4O15457 DIO3OS-212ENST00000557661 1937 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
MSH4O15457 NUDT16L1-201ENST00000304301 1349 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
MSH4O15457 TRABD-203ENST00000395827 2172 ntAPPRIS P3 TSL 5 BASIC21.12■□□□□ 0.97
MSH4O15457 SMPD1-203ENST00000527275 2188 ntAPPRIS P3 TSL 2 BASIC21.12■□□□□ 0.97
MSH4O15457 MFSD1-201ENST00000264266 1594 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
MSH4O15457 KLK14-201ENST00000156499 1060 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
MSH4O15457 PIEZO1-202ENST00000327397 1246 ntTSL 2 BASIC21.12■□□□□ 0.97
MSH4O15457 FOSL1-203ENST00000531493 1200 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
MSH4O15457 AC011773.3-202ENST00000549291 790 ntTSL 3 BASIC21.12■□□□□ 0.97
MSH4O15457 AL049597.2-201ENST00000565575 961 ntBASIC21.12■□□□□ 0.97
MSH4O15457 AC002310.4-201ENST00000568114 377 ntAPPRIS P1 TSL 5 BASIC21.12■□□□□ 0.97
MSH4O15457 AIPL1-209ENST00000575265 2111 ntAPPRIS ALT2 TSL 1 (best) BASIC21.12■□□□□ 0.97
MSH4O15457 UQCR11-201ENST00000585671 753 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
MSH4O15457 AC011498.2-201ENST00000588798 540 ntTSL 3 BASIC21.12■□□□□ 0.97
MSH4O15457 AC020911.2-202ENST00000588945 593 ntTSL 3 BASIC21.12■□□□□ 0.97
MSH4O15457 AC027682.4-201ENST00000605277 798 ntTSL 5 BASIC21.12■□□□□ 0.97
MSH4O15457 AC010331.1-201ENST00000611423 582 ntBASIC21.12■□□□□ 0.97
MSH4O15457 AL357033.4-201ENST00000617703 1807 ntBASIC21.12■□□□□ 0.97
MSH4O15457 NFKBIZ-201ENST00000326151 2058 ntTSL 2 BASIC21.12■□□□□ 0.97
MSH4O15457 POLE2-202ENST00000539565 1792 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
MSH4O15457 ACD-202ENST00000393919 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC21.12■□□□□ 0.97
MSH4O15457 MCRS1-202ENST00000357123 1428 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
MSH4O15457 ARID3C-201ENST00000378909 1411 ntAPPRIS P1 TSL 2 BASIC21.12■□□□□ 0.97
MSH4O15457 AC012615.6-201ENST00000593201 1697 ntTSL 2 BASIC21.12■□□□□ 0.97
MSH4O15457 TINAGL1-202ENST00000457433 2140 ntAPPRIS ALT2 TSL 2 BASIC21.11■□□□□ 0.97
MSH4O15457 HIC1-201ENST00000322941 3053 ntAPPRIS P1 TSL 5 BASIC21.11■□□□□ 0.97
MSH4O15457 GDPD1-201ENST00000284116 1821 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
MSH4O15457 GHDC-212ENST00000593209 1827 ntTSL 5 BASIC21.11■□□□□ 0.97
MSH4O15457 BHLHE22-201ENST00000321870 3262 ntAPPRIS P1 BASIC21.11■□□□□ 0.97
MSH4O15457 ARHGAP8-202ENST00000356099 1584 ntAPPRIS P3 TSL 1 (best) BASIC21.11■□□□□ 0.97
MSH4O15457 ABO-203ENST00000611156 1577 ntAPPRIS ALT2 TSL 5 BASIC21.11■□□□□ 0.97
MSH4O15457 PPP4C-202ENST00000561610 1333 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
MSH4O15457 CDHR4-201ENST00000343366 1188 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
MSH4O15457 ANKRD20A18P-201ENST00000359341 492 ntBASIC21.11■□□□□ 0.97
MSH4O15457 RASGRP2-205ENST00000377489 583 ntTSL 3 BASIC21.11■□□□□ 0.97
MSH4O15457 RNF152P1-201ENST00000397754 604 ntBASIC21.11■□□□□ 0.97
MSH4O15457 SELENOF-203ENST00000401030 727 ntTSL 2 BASIC21.11■□□□□ 0.97
MSH4O15457 ELP6-205ENST00000439305 880 ntTSL 2 BASIC21.11■□□□□ 0.97
MSH4O15457 ETFA-216ENST00000560726 942 ntTSL 3 BASIC21.11■□□□□ 0.97
MSH4O15457 GCSHP2-201ENST00000560971 527 ntBASIC21.11■□□□□ 0.97
MSH4O15457 ULK4P3-205ENST00000568486 1158 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
MSH4O15457 CENPS-CORT-205ENST00000602787 571 ntAPPRIS P1 TSL 3 BASIC21.11■□□□□ 0.97
MSH4O15457 AC140113.3-201ENST00000605663 199 ntBASIC21.11■□□□□ 0.97
MSH4O15457 CTBP2-214ENST00000531469 1918 ntAPPRIS P1 TSL 2 BASIC21.11■□□□□ 0.97
MSH4O15457 ACOT4-201ENST00000326303 2362 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 72.8 ms