Protein–RNA interactions for Protein: O00257

CBX4, E3 SUMO-protein ligase CBX4, humanhuman

Predictions only

Length 560 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CBX4O00257 UBE3C-201ENST00000348165 5229 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
CBX4O00257 RPS6KB1-204ENST00000443572 1913 ntTSL 2 BASIC19.23■□□□□ 0.67
CBX4O00257 AL691447.2-201ENST00000454869 2162 ntTSL 2 BASIC19.23■□□□□ 0.67
CBX4O00257 CHST2-201ENST00000309575 4582 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
CBX4O00257 PHKG2-202ENST00000424889 1566 ntTSL 2 BASIC19.23■□□□□ 0.67
CBX4O00257 RTBDN-201ENST00000322912 1328 ntAPPRIS P3 TSL 1 (best) BASIC19.23■□□□□ 0.67
CBX4O00257 ARFIP2-204ENST00000445086 1300 ntTSL 2 BASIC19.23■□□□□ 0.67
CBX4O00257 CWH43-201ENST00000226432 2472 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
CBX4O00257 TBXA2R-201ENST00000375190 2608 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
CBX4O00257 LGALS8-AS1-201ENST00000487567 1457 ntBASIC19.22■□□□□ 0.67
CBX4O00257 DENND1A-203ENST00000373624 5010 ntAPPRIS P4 TSL 5 BASIC19.22■□□□□ 0.67
CBX4O00257 DNAJC8-201ENST00000263697 1759 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
CBX4O00257 LRRC4B-201ENST00000389201 2958 ntAPPRIS P1 TSL 2 BASIC19.22■□□□□ 0.67
CBX4O00257 ANKRD53-202ENST00000360589 1666 ntAPPRIS ALT2 TSL 2 BASIC19.22■□□□□ 0.67
CBX4O00257 NUDT8-201ENST00000301490 809 ntAPPRIS P3 TSL 1 (best) BASIC19.22■□□□□ 0.67
CBX4O00257 HRAS-201ENST00000311189 894 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
CBX4O00257 COMMD1-201ENST00000311832 911 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
CBX4O00257 BOLA3-202ENST00000327428 639 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
CBX4O00257 AL023284.2-201ENST00000405850 579 ntBASIC19.22■□□□□ 0.67
CBX4O00257 HAGLR-204ENST00000425005 623 ntTSL 3 BASIC19.22■□□□□ 0.67
CBX4O00257 DIO1-206ENST00000525202 558 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
CBX4O00257 NDUFS3-213ENST00000534716 1263 ntTSL 2 BASIC19.22■□□□□ 0.67
CBX4O00257 TXNL4A-211ENST00000592837 611 ntTSL 2 BASIC19.22■□□□□ 0.67
CBX4O00257 PNMA8A-203ENST00000602246 572 ntAPPRIS ALT2 TSL 4 BASIC19.22■□□□□ 0.67
CBX4O00257 GPR35-201ENST00000319838 2249 ntAPPRIS P3 TSL 2 BASIC19.22■□□□□ 0.67
CBX4O00257 P2RY6-203ENST00000393591 1829 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
CBX4O00257 THOC3-212ENST00000628318 1442 ntTSL 5 BASIC19.22■□□□□ 0.67
CBX4O00257 ATP5L-201ENST00000300688 1577 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
CBX4O00257 PHLDA1-202ENST00000602540 5741 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
CBX4O00257 WAC-205ENST00000375664 5924 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
CBX4O00257 ROR1-201ENST00000371079 5832 ntAPPRIS P2 TSL 1 (best) BASIC19.22■□□□□ 0.67
CBX4O00257 PARS2-201ENST00000371279 2347 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
CBX4O00257 MMD2-201ENST00000401401 2335 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
CBX4O00257 LRRC23-201ENST00000007969 1615 ntAPPRIS P4 TSL 1 (best) BASIC19.22■□□□□ 0.67
CBX4O00257 GPR83-202ENST00000539203 1909 ntTSL 5 BASIC19.21■□□□□ 0.67
CBX4O00257 TRIM58-201ENST00000366481 3225 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
CBX4O00257 KMT5B-203ENST00000401547 2666 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
CBX4O00257 SMN2-202ENST00000380742 1388 ntAPPRIS ALT2 TSL 5 BASIC19.21■□□□□ 0.67
CBX4O00257 RCC2P3-201ENST00000418112 1537 ntBASIC19.21■□□□□ 0.67
CBX4O00257 PHB2-203ENST00000535923 1515 ntAPPRIS P2 TSL 5 BASIC19.21■□□□□ 0.67
CBX4O00257 CD7-206ENST00000583376 1659 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
CBX4O00257 IRF7-202ENST00000348655 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
CBX4O00257 TUBA3FP-202ENST00000422086 1974 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
CBX4O00257 NDRG2-227ENST00000554143 1980 ntAPPRIS ALT1 TSL 2 BASIC19.21■□□□□ 0.67
CBX4O00257 YTHDF3-214ENST00000621890 2296 ntTSL 5 BASIC19.21■□□□□ 0.67
CBX4O00257 PITX2-201ENST00000306732 2320 ntAPPRIS P4 TSL 1 (best) BASIC19.21■□□□□ 0.67
CBX4O00257 CFL1-201ENST00000308162 1234 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
CBX4O00257 SIGLEC14-201ENST00000360844 2035 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
CBX4O00257 ASMTL-201ENST00000381317 2027 ntAPPRIS P3 TSL 1 (best) BASIC19.21■□□□□ 0.67
CBX4O00257 SNCB-202ENST00000393693 1234 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
CBX4O00257 MCCD1P1-208ENST00000445732 328 ntBASIC19.21■□□□□ 0.67
CBX4O00257 LY6E-214ENST00000522971 857 ntAPPRIS P2 TSL 2 BASIC19.21■□□□□ 0.67
CBX4O00257 AC087388.1-201ENST00000571370 1112 ntBASIC19.21■□□□□ 0.67
CBX4O00257 ADORA1-208ENST00000618295 862 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
CBX4O00257 AC006011.2-201ENST00000621313 1158 ntBASIC19.21■□□□□ 0.67
CBX4O00257 AL138966.2-201ENST00000621997 464 ntBASIC19.21■□□□□ 0.67
CBX4O00257 MARK4-211ENST00000622871 1147 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
CBX4O00257 PFKFB3-219ENST00000640683 2311 ntTSL 5 BASIC19.21■□□□□ 0.67
CBX4O00257 RREB1-201ENST00000334984 5789 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
CBX4O00257 PEX16-202ENST00000378750 1335 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
CBX4O00257 KCTD18-201ENST00000359878 2940 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
CBX4O00257 ADORA2A-215ENST00000618076 2630 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.66
CBX4O00257 ST6GALNAC4-201ENST00000335791 1691 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CBX4O00257 CLIP2-201ENST00000223398 5563 ntAPPRIS P1 TSL 5 BASIC19.2■□□□□ 0.66
CBX4O00257 PCDH1-201ENST00000287008 4793 ntAPPRIS P3 TSL 5 BASIC19.2■□□□□ 0.66
CBX4O00257 PSPC1-206ENST00000619300 2013 ntAPPRIS P1 TSL 5 BASIC19.2■□□□□ 0.66
CBX4O00257 NECTIN3-211ENST00000493615 1876 ntAPPRIS ALT2 TSL 2 BASIC19.2■□□□□ 0.66
CBX4O00257 AC008878.3-201ENST00000617428 4964 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CBX4O00257 C16orf70-201ENST00000219139 2865 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CBX4O00257 ANKRD24-201ENST00000262970 3711 ntAPPRIS ALT2 TSL 5 BASIC19.2■□□□□ 0.66
CBX4O00257 HS2ST1-202ENST00000370551 1585 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
CBX4O00257 AC011944.1-201ENST00000316148 1900 ntTSL 2 BASIC19.2■□□□□ 0.66
CBX4O00257 PMEPA1-202ENST00000341744 4845 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CBX4O00257 DGCR6L-201ENST00000248879 1154 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CBX4O00257 FAM212A-201ENST00000333323 1040 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CBX4O00257 TP53BP2-201ENST00000343537 4651 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CBX4O00257 MIEN1-201ENST00000394231 1006 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CBX4O00257 AC037459.1-202ENST00000430850 531 ntAPPRIS P1 TSL 4 BASIC19.2■□□□□ 0.66
CBX4O00257 RARRES2-205ENST00000482669 563 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CBX4O00257 SNCB-205ENST00000510387 730 ntAPPRIS P1 TSL 2 BASIC19.2■□□□□ 0.66
CBX4O00257 AC012213.1-202ENST00000523422 449 ntTSL 3 BASIC19.2■□□□□ 0.66
CBX4O00257 AP006621.4-201ENST00000527021 532 ntTSL 5 BASIC19.2■□□□□ 0.66
CBX4O00257 AC079385.1-202ENST00000549203 569 ntTSL 4 BASIC19.2■□□□□ 0.66
CBX4O00257 PITPNB-211ENST00000634017 1017 ntAPPRIS ALT1 TSL 2 BASIC19.2■□□□□ 0.66
CBX4O00257 AC141257.4-201ENST00000634557 245 ntBASIC19.2■□□□□ 0.66
CBX4O00257 AC136944.6-201ENST00000634818 245 ntBASIC19.2■□□□□ 0.66
CBX4O00257 KCNC3-203ENST00000477616 3176 ntAPPRIS P2 TSL 1 (best) BASIC19.2■□□□□ 0.66
CBX4O00257 ZDHHC3-205ENST00000424952 2687 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CBX4O00257 PLCG1-AS1-201ENST00000454626 1462 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
CBX4O00257 USP21-201ENST00000289865 2195 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CBX4O00257 GOSR2-226ENST00000639287 2367 ntTSL 5 BASIC19.2■□□□□ 0.66
CBX4O00257 CYSTM1-201ENST00000261811 1336 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CBX4O00257 LRWD1-201ENST00000292616 2215 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CBX4O00257 SNAI3-201ENST00000332281 1732 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CBX4O00257 CYP21A2-222ENST00000435122 1914 ntTSL 2 BASIC19.19■□□□□ 0.66
CBX4O00257 ACBD4-207ENST00000586346 1579 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
CBX4O00257 SHF-201ENST00000290894 2500 ntAPPRIS P3 TSL 2 BASIC19.19■□□□□ 0.66
CBX4O00257 AC073107.1-201ENST00000633579 1962 ntTSL 5 BASIC19.19■□□□□ 0.66
CBX4O00257 ZNF281-202ENST00000367352 2933 ntAPPRIS ALT2 TSL 2 BASIC19.19■□□□□ 0.66
CBX4O00257 SAMD11-213ENST00000618181 2179 ntAPPRIS ALT2 TSL 5 BASIC19.19■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 40.2 ms