Protein–RNA interactions for Protein: O00148

DDX39A, ATP-dependent RNA helicase DDX39A, humanhuman

Known RBP Predictions only

Length 427 aa.

Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX39AO00148 ACTL6B-201ENST00000160382 1537 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
DDX39AO00148 TBX21-201ENST00000177694 2572 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
DDX39AO00148 NECTIN3-211ENST00000493615 1876 ntAPPRIS ALT2 TSL 2 BASIC21.18■□□□□ 0.98
DDX39AO00148 NDRG2-227ENST00000554143 1980 ntAPPRIS ALT1 TSL 2 BASIC21.17■□□□□ 0.98
DDX39AO00148 MMP28-204ENST00000615136 2033 ntAPPRIS ALT2 TSL 1 (best) BASIC21.17■□□□□ 0.98
DDX39AO00148 C15orf56-202ENST00000623360 2129 ntTSL 2 BASIC21.17■□□□□ 0.98
DDX39AO00148 SGO1-209ENST00000442720 2266 ntAPPRIS ALT2 TSL 1 (best) BASIC21.17■□□□□ 0.98
DDX39AO00148 KIF26A-202ENST00000423312 5649 ntAPPRIS P2 TSL 5 BASIC21.17■□□□□ 0.98
DDX39AO00148 UBL5-201ENST00000358666 513 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
DDX39AO00148 CR769775.1-204ENST00000439760 747 ntTSL 5 BASIC21.17■□□□□ 0.98
DDX39AO00148 AC092647.4-201ENST00000457211 535 ntBASIC21.17■□□□□ 0.98
DDX39AO00148 AL359075.1-203ENST00000462729 1002 ntBASIC21.17■□□□□ 0.98
DDX39AO00148 AL132780.2-201ENST00000557615 1021 ntTSL 3 BASIC21.17■□□□□ 0.98
DDX39AO00148 ETFA-216ENST00000560726 942 ntTSL 3 BASIC21.17■□□□□ 0.98
DDX39AO00148 AC087388.1-201ENST00000571370 1112 ntBASIC21.17■□□□□ 0.98
DDX39AO00148 RABAC1-210ENST00000601891 628 ntTSL 3 BASIC21.17■□□□□ 0.98
DDX39AO00148 PRLHR-202ENST00000636925 1275 ntAPPRIS P1 BASIC21.17■□□□□ 0.98
DDX39AO00148 HAUS4-218ENST00000555986 1626 ntTSL 5 BASIC21.17■□□□□ 0.98
DDX39AO00148 MLST8-232ENST00000569417 1870 ntAPPRIS P3 TSL 1 (best) BASIC21.17■□□□□ 0.98
DDX39AO00148 AC008556.1-201ENST00000610908 2040 ntBASIC21.17■□□□□ 0.98
DDX39AO00148 SMPD3-203ENST00000563226 2093 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
DDX39AO00148 PODXL2-201ENST00000342480 2186 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
DDX39AO00148 HOXB9-201ENST00000311177 2581 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
DDX39AO00148 NSMF-201ENST00000265663 2981 ntAPPRIS P3 TSL 1 (best) BASIC21.17■□□□□ 0.98
DDX39AO00148 SMAD7-201ENST00000262158 3087 ntAPPRIS P3 TSL 1 (best) BASIC21.16■□□□□ 0.98
DDX39AO00148 ATF5-201ENST00000423777 2069 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
DDX39AO00148 AC008105.1-201ENST00000587534 2003 ntTSL 2 BASIC21.16■□□□□ 0.98
DDX39AO00148 TMEM191A-208ENST00000450925 1961 ntTSL 2 BASIC21.16■□□□□ 0.98
DDX39AO00148 TMPRSS5-209ENST00000544634 1524 ntTSL 2 BASIC21.16■□□□□ 0.98
DDX39AO00148 NUDT17-201ENST00000334513 1473 ntAPPRIS P1 TSL 5 BASIC21.16■□□□□ 0.98
DDX39AO00148 NME1-202ENST00000336097 986 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
DDX39AO00148 LCE4A-202ENST00000368777 672 ntAPPRIS P1 TSL 2 BASIC21.16■□□□□ 0.98
DDX39AO00148 GUCA2B-201ENST00000372581 597 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
DDX39AO00148 ZNF32-201ENST00000374433 1137 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
DDX39AO00148 NME1-203ENST00000393196 940 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
DDX39AO00148 HDAC11-AS1-201ENST00000424112 515 ntTSL 2 BASIC21.16■□□□□ 0.98
DDX39AO00148 LINC01063-201ENST00000441644 348 ntTSL 3 BASIC21.16■□□□□ 0.98
DDX39AO00148 EHMT1-211ENST00000482340 691 ntTSL 5 BASIC21.16■□□□□ 0.98
DDX39AO00148 NDUFB10-202ENST00000543683 830 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
DDX39AO00148 COLCA2-205ENST00000614153 1264 ntTSL 3 BASIC21.16■□□□□ 0.98
DDX39AO00148 TRIM58-201ENST00000366481 3225 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
DDX39AO00148 VAV1-210ENST00000602142 2620 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
DDX39AO00148 ADCY5-202ENST00000462833 7311 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
DDX39AO00148 EFHD2-201ENST00000375980 2419 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
DDX39AO00148 PARS2-201ENST00000371279 2347 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
DDX39AO00148 NPTX1-201ENST00000306773 5122 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
DDX39AO00148 SLC16A3-221ENST00000617373 2048 ntAPPRIS P1 TSL 5 BASIC21.16■□□□□ 0.98
DDX39AO00148 SLC16A3-222ENST00000619321 2015 ntAPPRIS P1 TSL 5 BASIC21.16■□□□□ 0.98
DDX39AO00148 GPR83-202ENST00000539203 1909 ntTSL 5 BASIC21.16■□□□□ 0.98
DDX39AO00148 MAPK9-201ENST00000343111 4369 ntTSL 5 BASIC21.15■□□□□ 0.98
DDX39AO00148 ARMC6-220ENST00000546344 1814 ntTSL 2 BASIC21.15■□□□□ 0.98
DDX39AO00148 TFCP2-205ENST00000549867 1727 ntTSL 5 BASIC21.15■□□□□ 0.98
DDX39AO00148 KRT14-201ENST00000167586 1662 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
DDX39AO00148 GPR142-201ENST00000335666 1437 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
DDX39AO00148 KCNK4-205ENST00000538767 1389 ntTSL 2 BASIC21.15■□□□□ 0.98
DDX39AO00148 KAT5-203ENST00000377046 2237 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
DDX39AO00148 SHANK1-203ENST00000391813 4785 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
DDX39AO00148 SNCB-202ENST00000393693 1234 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
DDX39AO00148 AC007731.5-201ENST00000429594 644 ntAPPRIS P1 TSL 5 BASIC21.15■□□□□ 0.98
DDX39AO00148 AC074183.1-201ENST00000439105 782 ntTSL 5 BASIC21.15■□□□□ 0.98
DDX39AO00148 GCSHP2-201ENST00000560971 527 ntBASIC21.15■□□□□ 0.98
DDX39AO00148 DCTN5-208ENST00000568589 772 ntTSL 2 BASIC21.15■□□□□ 0.98
DDX39AO00148 RMI2-205ENST00000576027 818 ntTSL 2 BASIC21.15■□□□□ 0.98
DDX39AO00148 AC004448.5-201ENST00000579897 567 ntTSL 5 BASIC21.15■□□□□ 0.98
DDX39AO00148 NT5C-211ENST00000582170 653 ntTSL 3 BASIC21.15■□□□□ 0.98
DDX39AO00148 MIR3180-5-201ENST00000583743 153 ntBASIC21.15■□□□□ 0.98
DDX39AO00148 UQCR11-201ENST00000585671 753 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
DDX39AO00148 AC011498.2-201ENST00000588798 540 ntTSL 3 BASIC21.15■□□□□ 0.98
DDX39AO00148 AC010422.3-201ENST00000597692 838 ntAPPRIS P1 TSL 2 BASIC21.15■□□□□ 0.98
DDX39AO00148 UBA52-210ENST00000598780 668 ntAPPRIS P1 TSL 3 BASIC21.15■□□□□ 0.98
DDX39AO00148 HTRA4-201ENST00000302495 2095 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
DDX39AO00148 SIGLEC14-201ENST00000360844 2035 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
DDX39AO00148 GMPPA-203ENST00000358215 1823 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
DDX39AO00148 TMEM104-202ENST00000417024 1781 ntTSL 2 BASIC21.15■□□□□ 0.98
DDX39AO00148 GOSR2-226ENST00000639287 2367 ntTSL 5 BASIC21.15■□□□□ 0.98
DDX39AO00148 TSSC4-201ENST00000333256 1686 ntAPPRIS P3 TSL 1 (best) BASIC21.15■□□□□ 0.98
DDX39AO00148 MATN4-201ENST00000353917 1657 ntTSL 5 BASIC21.15■□□□□ 0.98
DDX39AO00148 ICA1-208ENST00000407906 1615 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
DDX39AO00148 CADPS2-208ENST00000615869 6066 ntAPPRIS ALT1 TSL 5 BASIC21.15■□□□□ 0.98
DDX39AO00148 SAMD11-213ENST00000618181 2179 ntAPPRIS ALT2 TSL 5 BASIC21.14■□□□□ 0.98
DDX39AO00148 FAM83H-201ENST00000388913 5654 ntAPPRIS P1 TSL 5 BASIC21.14■□□□□ 0.98
DDX39AO00148 SLC47A1-202ENST00000395585 1998 ntTSL 1 (best) BASIC21.14■□□□□ 0.98
DDX39AO00148 MAPK8IP1-201ENST00000241014 3050 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
DDX39AO00148 P2RX2-206ENST00000389110 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC21.14■□□□□ 0.97
DDX39AO00148 MAGED2-213ENST00000627068 1811 ntAPPRIS ALT2 TSL 5 BASIC21.14■□□□□ 0.97
DDX39AO00148 PRKCB-209ENST00000498058 480 ntTSL 3 BASIC21.14■□□□□ 0.97
DDX39AO00148 REEP1-207ENST00000535845 1196 ntTSL 2 BASIC21.14■□□□□ 0.97
DDX39AO00148 MTHFS-202ENST00000559722 948 ntTSL 2 BASIC21.14■□□□□ 0.97
DDX39AO00148 MED9-202ENST00000580462 565 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
DDX39AO00148 BVES-AS1-203ENST00000580511 853 ntTSL 5 BASIC21.14■□□□□ 0.97
DDX39AO00148 PSMD8-202ENST00000585598 541 ntTSL 5 BASIC21.14■□□□□ 0.97
DDX39AO00148 LRRC1-202ENST00000370888 3180 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
DDX39AO00148 JPT1-203ENST00000409753 1605 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
DDX39AO00148 CWH43-201ENST00000226432 2472 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
DDX39AO00148 C3orf70-201ENST00000335012 5901 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
DDX39AO00148 P2RY6-203ENST00000393591 1829 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
DDX39AO00148 ZSWIM8-220ENST00000604524 5465 ntTSL 5 BASIC21.13■□□□□ 0.97
DDX39AO00148 TBXA2R-201ENST00000375190 2608 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
DDX39AO00148 EPHA10-202ENST00000373048 5425 ntAPPRIS P2 TSL 5 BASIC21.13■□□□□ 0.97
DDX39AO00148 RIPK2-201ENST00000220751 2584 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 15.5 ms