Protein–RNA interactions for Protein: A8TX70

COL6A5, Collagen alpha-5(VI) chain, humanhuman

Predictions only

Length 2,615 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A5A8TX70 AL022316.1-201ENST00000428765 572 ntTSL 4 BASIC14.59□□□□□ -0.07
COL6A5A8TX70 AC010240.3-201ENST00000607688 395 ntBASIC14.59□□□□□ -0.07
COL6A5A8TX70 MIR6752-201ENST00000618442 71 ntBASIC14.59□□□□□ -0.07
COL6A5A8TX70 ADORA2A-AS1-203ENST00000427813 2027 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
COL6A5A8TX70 AL161756.1-202ENST00000359491 1717 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
COL6A5A8TX70 CHAC1-205ENST00000617961 1498 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
COL6A5A8TX70 DNAJC8-201ENST00000263697 1759 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
COL6A5A8TX70 SPIRE1-203ENST00000410092 5533 ntAPPRIS P3 TSL 1 (best) BASIC14.59□□□□□ -0.07
COL6A5A8TX70 CENPU-201ENST00000281453 1998 ntAPPRIS P2 TSL 1 (best) BASIC14.59□□□□□ -0.07
COL6A5A8TX70 DBNL-213ENST00000452943 1513 ntTSL 2 BASIC14.59□□□□□ -0.07
COL6A5A8TX70 AC023830.1-201ENST00000569678 1543 ntTSL 2 BASIC14.59□□□□□ -0.07
COL6A5A8TX70 PIGQ-204ENST00000409527 1915 ntAPPRIS P1 TSL 2 BASIC14.59□□□□□ -0.07
COL6A5A8TX70 H2AFZ-201ENST00000296417 979 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
COL6A5A8TX70 METTL26-201ENST00000301686 794 ntAPPRIS P1 TSL 2 BASIC14.59□□□□□ -0.07
COL6A5A8TX70 NQO2-203ENST00000380441 1021 ntTSL 5 BASIC14.59□□□□□ -0.07
COL6A5A8TX70 METTL26-205ENST00000397666 726 ntTSL 2 BASIC14.59□□□□□ -0.07
COL6A5A8TX70 TMEM213-202ENST00000413208 480 ntAPPRIS ALT2 TSL 3 BASIC14.59□□□□□ -0.07
COL6A5A8TX70 BPHL-208ENST00000434640 1186 ntTSL 5 BASIC14.59□□□□□ -0.07
COL6A5A8TX70 FOXP3-205ENST00000518685 1213 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
COL6A5A8TX70 TSPAN4-214ENST00000525201 834 ntTSL 5 BASIC14.59□□□□□ -0.07
COL6A5A8TX70 DUX4L17-201ENST00000557360 1267 ntBASIC14.59□□□□□ -0.07
COL6A5A8TX70 CDC42EP4-206ENST00000581014 737 ntTSL 5 BASIC14.59□□□□□ -0.07
COL6A5A8TX70 AL078644.1-201ENST00000609881 752 ntBASIC14.59□□□□□ -0.07
COL6A5A8TX70 AC093512.1-201ENST00000617969 520 ntBASIC14.59□□□□□ -0.07
COL6A5A8TX70 MALAT1-215ENST00000619449 794 ntTSL 3 BASIC14.59□□□□□ -0.07
COL6A5A8TX70 ST3GAL3-239ENST00000545417 1667 ntTSL 5 BASIC14.59□□□□□ -0.07
COL6A5A8TX70 SIGIRR-220ENST00000531205 1649 ntTSL 2 BASIC14.58□□□□□ -0.07
COL6A5A8TX70 TRIM67-203ENST00000449018 2166 ntTSL 1 (best) BASIC14.58□□□□□ -0.07
COL6A5A8TX70 AC002310.6-201ENST00000624451 1377 ntBASIC14.58□□□□□ -0.07
COL6A5A8TX70 LINC00634-201ENST00000381348 1510 ntTSL 1 (best) BASIC14.58□□□□□ -0.07
COL6A5A8TX70 PGAP1-204ENST00000409475 2443 ntTSL 2 BASIC14.58□□□□□ -0.08
COL6A5A8TX70 P2RX4-202ENST00000337233 2032 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
COL6A5A8TX70 CACNG7-201ENST00000222212 1016 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
COL6A5A8TX70 AC091182.1-202ENST00000518765 713 ntTSL 2 BASIC14.58□□□□□ -0.08
COL6A5A8TX70 EEF1D-223ENST00000528610 923 ntAPPRIS ALT2 TSL 1 (best) BASIC14.58□□□□□ -0.08
COL6A5A8TX70 EEF1D-238ENST00000531621 840 ntTSL 3 BASIC14.58□□□□□ -0.08
COL6A5A8TX70 ABO-202ENST00000538324 1147 ntAPPRIS P5 TSL 5 BASIC14.58□□□□□ -0.08
COL6A5A8TX70 LINC01956-202ENST00000584273 612 ntTSL 3 BASIC14.58□□□□□ -0.08
COL6A5A8TX70 CHST13-202ENST00000615522 1146 ntTSL 5 BASIC14.58□□□□□ -0.08
COL6A5A8TX70 AP004609.1-201ENST00000498872 1646 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
COL6A5A8TX70 HOXB1-202ENST00000577092 1414 ntBASIC14.58□□□□□ -0.08
COL6A5A8TX70 NPR3-203ENST00000415167 1753 ntAPPRIS P3 TSL 1 (best) BASIC14.58□□□□□ -0.08
COL6A5A8TX70 GALC-202ENST00000393568 2054 ntTSL 2 BASIC14.58□□□□□ -0.08
COL6A5A8TX70 SHD-201ENST00000543264 2577 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
COL6A5A8TX70 SARAF-214ENST00000545648 1976 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
COL6A5A8TX70 ARHGAP8-201ENST00000336963 1487 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
COL6A5A8TX70 NCK2-205ENST00000451463 1795 ntTSL 2 BASIC14.58□□□□□ -0.08
COL6A5A8TX70 TMEM205-201ENST00000354882 1034 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
COL6A5A8TX70 POLR3GL-202ENST00000369314 1165 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
COL6A5A8TX70 GK-202ENST00000378941 458 ntTSL 3 BASIC14.58□□□□□ -0.08
COL6A5A8TX70 PTX4-202ENST00000440447 1117 ntTSL 5 BASIC14.58□□□□□ -0.08
COL6A5A8TX70 AP003733.1-201ENST00000491725 852 ntBASIC14.58□□□□□ -0.08
COL6A5A8TX70 LINC01336-202ENST00000506086 479 ntTSL 5 BASIC14.58□□□□□ -0.08
COL6A5A8TX70 ISCU-208ENST00000539593 1071 ntTSL 2 BASIC14.58□□□□□ -0.08
COL6A5A8TX70 AC009630.3-201ENST00000581909 729 ntTSL 5 BASIC14.58□□□□□ -0.08
COL6A5A8TX70 TMEM205-205ENST00000586590 677 ntAPPRIS P1 TSL 5 BASIC14.58□□□□□ -0.08
COL6A5A8TX70 TMEM205-207ENST00000586956 1003 ntAPPRIS P1 TSL 2 BASIC14.58□□□□□ -0.08
COL6A5A8TX70 TIMM13-202ENST00000591871 631 ntTSL 5 BASIC14.58□□□□□ -0.08
COL6A5A8TX70 COPE-211ENST00000600932 1144 ntTSL 5 BASIC14.58□□□□□ -0.08
COL6A5A8TX70 AC244517.11-201ENST00000624192 573 ntTSL 5 BASIC14.58□□□□□ -0.08
COL6A5A8TX70 Z92544.3-201ENST00000624747 417 ntBASIC14.58□□□□□ -0.08
COL6A5A8TX70 ME2-202ENST00000382927 2492 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
COL6A5A8TX70 WDR61-201ENST00000267973 1387 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
COL6A5A8TX70 RGS3-232ENST00000620489 1503 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
COL6A5A8TX70 CCDC96-201ENST00000310085 2091 ntAPPRIS P1 BASIC14.57□□□□□ -0.08
COL6A5A8TX70 SBDS-201ENST00000246868 1631 ntAPPRIS P2 TSL 1 (best) BASIC14.57□□□□□ -0.08
COL6A5A8TX70 TMEM225B-202ENST00000431679 1314 ntAPPRIS P1 TSL 5 BASIC14.57□□□□□ -0.08
COL6A5A8TX70 RAD23A-203ENST00000586534 1746 ntAPPRIS P3 TSL 1 (best) BASIC14.57□□□□□ -0.08
COL6A5A8TX70 TERF2-201ENST00000254942 2983 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
COL6A5A8TX70 FIGLA-201ENST00000332372 722 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
COL6A5A8TX70 H3F3C-201ENST00000340398 1057 ntAPPRIS P1 BASIC14.57□□□□□ -0.08
COL6A5A8TX70 AC015922.1-201ENST00000421102 1152 ntBASIC14.57□□□□□ -0.08
COL6A5A8TX70 GAPDHP21-201ENST00000450301 1010 ntBASIC14.57□□□□□ -0.08
COL6A5A8TX70 ALG1L5P-201ENST00000482043 771 ntBASIC14.57□□□□□ -0.08
COL6A5A8TX70 AC093714.2-201ENST00000489626 763 ntTSL 3 BASIC14.57□□□□□ -0.08
COL6A5A8TX70 AC021087.4-201ENST00000563761 564 ntBASIC14.57□□□□□ -0.08
COL6A5A8TX70 AC026336.2-201ENST00000563922 763 ntTSL 2 BASIC14.57□□□□□ -0.08
COL6A5A8TX70 TPSB2-201ENST00000606293 1165 ntAPPRIS ALT2 TSL 1 (best) BASIC14.57□□□□□ -0.08
COL6A5A8TX70 AQP6-205ENST00000618286 829 ntTSL 5 BASIC14.57□□□□□ -0.08
COL6A5A8TX70 ANKRD54-201ENST00000215941 2184 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
COL6A5A8TX70 NKX2-1-201ENST00000354822 2191 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
COL6A5A8TX70 ALKBH5-203ENST00000541285 1605 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
COL6A5A8TX70 ARL2BP-201ENST00000219204 2130 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
COL6A5A8TX70 EDNRA-206ENST00000511804 1569 ntTSL 2 BASIC14.57□□□□□ -0.08
COL6A5A8TX70 CDK4-202ENST00000312990 1650 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
COL6A5A8TX70 HBZ-201ENST00000252951 755 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
COL6A5A8TX70 PSMB8-202ENST00000374882 1124 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
COL6A5A8TX70 MCCD1P1-208ENST00000445732 328 ntBASIC14.57□□□□□ -0.08
COL6A5A8TX70 AC082651.1-201ENST00000478468 832 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
COL6A5A8TX70 AC026191.1-201ENST00000491930 829 ntTSL 3 BASIC14.57□□□□□ -0.08
COL6A5A8TX70 AC095060.1-201ENST00000502455 549 ntTSL 4 BASIC14.57□□□□□ -0.08
COL6A5A8TX70 AC136475.3-203ENST00000525217 617 ntTSL 2 BASIC14.57□□□□□ -0.08
COL6A5A8TX70 AP006333.1-201ENST00000543817 575 ntTSL 4 BASIC14.57□□□□□ -0.08
COL6A5A8TX70 PDCD6-214ENST00000628729 1073 ntTSL 5 BASIC14.57□□□□□ -0.08
COL6A5A8TX70 NAPEPLD-208ENST00000427257 1822 ntAPPRIS P1 TSL 2 BASIC14.56□□□□□ -0.08
COL6A5A8TX70 SPON2-203ENST00000431380 1802 ntAPPRIS P1 TSL 5 BASIC14.56□□□□□ -0.08
COL6A5A8TX70 KNOP1-205ENST00000568230 1311 ntAPPRIS ALT2 TSL 5 BASIC14.56□□□□□ -0.08
COL6A5A8TX70 FUZ-201ENST00000313777 1675 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
COL6A5A8TX70 TCEAL4-201ENST00000372629 1511 ntAPPRIS ALT2 TSL 1 (best) BASIC14.56□□□□□ -0.08
COL6A5A8TX70 CHST8-202ENST00000434302 2225 ntAPPRIS P1 TSL 2 BASIC14.56□□□□□ -0.08
Retrieved 100 of 98,524 protein–RNA pairs in 49.3 ms