Protein–RNA interactions for Protein: A6NMZ7

COL6A6, Collagen alpha-6(VI) chain, humanhuman

Predictions only

Length 2,263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A6A6NMZ7 DNASE1L2-203ENST00000564065 2194 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
COL6A6A6NMZ7 CCND3-204ENST00000414200 1724 ntTSL 2 BASIC16.94■□□□□ 0.3
COL6A6A6NMZ7 CCS-201ENST00000310190 942 ntTSL 5 BASIC16.94■□□□□ 0.3
COL6A6A6NMZ7 GSTO1-202ENST00000369713 972 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
COL6A6A6NMZ7 MIEF2-202ENST00000395703 718 ntTSL 3 BASIC16.94■□□□□ 0.3
COL6A6A6NMZ7 METTL21AP1-201ENST00000438852 635 ntBASIC16.94■□□□□ 0.3
COL6A6A6NMZ7 LMCD1-AS1-204ENST00000446281 932 ntTSL 5 BASIC16.94■□□□□ 0.3
COL6A6A6NMZ7 AL049840.3-201ENST00000602669 611 ntBASIC16.94■□□□□ 0.3
COL6A6A6NMZ7 AC005258.1-201ENST00000621615 1268 ntAPPRIS P1 TSL 2 BASIC16.94■□□□□ 0.3
COL6A6A6NMZ7 GTF2IRD2B-210ENST00000629105 1910 ntTSL 5 BASIC16.94■□□□□ 0.3
COL6A6A6NMZ7 HOMER1-202ENST00000334082 5881 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
COL6A6A6NMZ7 FBXO27-202ENST00000509137 2130 ntAPPRIS P2 TSL 1 (best) BASIC16.94■□□□□ 0.3
COL6A6A6NMZ7 TDRKH-205ENST00000368827 2318 ntAPPRIS P2 TSL 1 (best) BASIC16.94■□□□□ 0.3
COL6A6A6NMZ7 SPSB3-208ENST00000566339 1784 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
COL6A6A6NMZ7 ST8SIA2-201ENST00000268164 5708 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
COL6A6A6NMZ7 ANXA8-202ENST00000583448 1971 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
COL6A6A6NMZ7 CBLN3-201ENST00000267406 2346 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
COL6A6A6NMZ7 MEGF6-202ENST00000356575 5455 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
COL6A6A6NMZ7 CTSG-201ENST00000216336 886 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
COL6A6A6NMZ7 RBCK1-206ENST00000400247 790 ntTSL 2 BASIC16.94■□□□□ 0.3
COL6A6A6NMZ7 AL023284.2-201ENST00000405850 579 ntBASIC16.94■□□□□ 0.3
COL6A6A6NMZ7 AC013402.1-201ENST00000456999 561 ntTSL 4 BASIC16.94■□□□□ 0.3
COL6A6A6NMZ7 TTLL12-204ENST00000494035 888 ntTSL 2 BASIC16.94■□□□□ 0.3
COL6A6A6NMZ7 S100A6-205ENST00000496817 673 ntAPPRIS P1 TSL 2 BASIC16.94■□□□□ 0.3
COL6A6A6NMZ7 AP001453.1-201ENST00000534988 923 ntTSL 3 BASIC16.94■□□□□ 0.3
COL6A6A6NMZ7 LINC01413-201ENST00000564843 772 ntTSL 3 BASIC16.94■□□□□ 0.3
COL6A6A6NMZ7 L34079.3-201ENST00000600242 546 ntTSL 4 BASIC16.94■□□□□ 0.3
COL6A6A6NMZ7 RABAC1-210ENST00000601891 628 ntTSL 3 BASIC16.94■□□□□ 0.3
COL6A6A6NMZ7 AC148477.3-202ENST00000376617 1766 ntTSL 2 BASIC16.94■□□□□ 0.3
COL6A6A6NMZ7 MAGED2-206ENST00000375068 2189 ntAPPRIS P2 TSL 1 (best) BASIC16.94■□□□□ 0.3
COL6A6A6NMZ7 PSPH-201ENST00000275605 2131 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
COL6A6A6NMZ7 CD19-206ENST00000567541 1707 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
COL6A6A6NMZ7 SBDS-201ENST00000246868 1631 ntAPPRIS P2 TSL 1 (best) BASIC16.93■□□□□ 0.3
COL6A6A6NMZ7 AC104109.2-201ENST00000602919 1418 ntBASIC16.93■□□□□ 0.3
COL6A6A6NMZ7 GYG1-202ENST00000345003 2052 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
COL6A6A6NMZ7 BID-212ENST00000614949 1988 ntTSL 5 BASIC16.93■□□□□ 0.3
COL6A6A6NMZ7 TMEM222-201ENST00000374076 1599 ntAPPRIS P2 TSL 1 (best) BASIC16.93■□□□□ 0.3
COL6A6A6NMZ7 UBE2E3-209ENST00000602710 1556 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
COL6A6A6NMZ7 IGHGP-201ENST00000390555 1178 ntBASIC16.93■□□□□ 0.3
COL6A6A6NMZ7 FAM8A3P-201ENST00000427218 844 ntBASIC16.93■□□□□ 0.3
COL6A6A6NMZ7 KRT18P3-201ENST00000451602 1288 ntBASIC16.93■□□□□ 0.3
COL6A6A6NMZ7 MYD88-211ENST00000495303 976 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
COL6A6A6NMZ7 AP000763.4-201ENST00000544674 752 ntTSL 5 BASIC16.93■□□□□ 0.3
COL6A6A6NMZ7 AC025162.1-201ENST00000554022 565 ntTSL 4 BASIC16.93■□□□□ 0.3
COL6A6A6NMZ7 AC034105.1-201ENST00000563488 319 ntBASIC16.93■□□□□ 0.3
COL6A6A6NMZ7 IER2-202ENST00000587885 1291 ntAPPRIS P1 TSL 3 BASIC16.93■□□□□ 0.3
COL6A6A6NMZ7 STK25-234ENST00000535007 2459 ntTSL 2 BASIC16.93■□□□□ 0.3
COL6A6A6NMZ7 TNIP1-205ENST00000518977 2200 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
COL6A6A6NMZ7 AC026412.3-201ENST00000605200 1661 ntTSL 5 BASIC16.93■□□□□ 0.3
COL6A6A6NMZ7 DAPK3-202ENST00000545797 2257 ntAPPRIS P1 TSL 2 BASIC16.93■□□□□ 0.3
COL6A6A6NMZ7 PSPH-202ENST00000395471 2178 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
COL6A6A6NMZ7 SNRPA1-201ENST00000254193 1055 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
COL6A6A6NMZ7 TM2D1-201ENST00000294613 1250 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
COL6A6A6NMZ7 TM2D1-204ENST00000371180 1248 ntTSL 5 BASIC16.93■□□□□ 0.3
COL6A6A6NMZ7 PAXX-201ENST00000371620 812 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
COL6A6A6NMZ7 TRIM36-203ENST00000379618 693 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
COL6A6A6NMZ7 CSF3-203ENST00000394148 622 ntTSL 3 BASIC16.93■□□□□ 0.3
COL6A6A6NMZ7 AC063976.1-201ENST00000457890 381 ntTSL 2 BASIC16.93■□□□□ 0.3
COL6A6A6NMZ7 TMUB1-204ENST00000476627 882 ntAPPRIS P1 TSL 3 BASIC16.93■□□□□ 0.3
COL6A6A6NMZ7 AC135050.2-203ENST00000529564 725 ntAPPRIS P1 TSL 4 BASIC16.93■□□□□ 0.3
COL6A6A6NMZ7 TM2D1-212ENST00000606498 969 ntAPPRIS P1 TSL 5 BASIC16.93■□□□□ 0.3
COL6A6A6NMZ7 ANO2-212ENST00000612575 1087 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
COL6A6A6NMZ7 AL355877.3-201ENST00000622820 899 ntBASIC16.93■□□□□ 0.3
COL6A6A6NMZ7 SPON2-201ENST00000290902 1869 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
COL6A6A6NMZ7 SYT5-202ENST00000537500 2612 ntAPPRIS P1 TSL 2 BASIC16.92■□□□□ 0.3
COL6A6A6NMZ7 SAMD10-201ENST00000369886 2181 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
COL6A6A6NMZ7 NCLN-205ENST00000590671 2070 ntTSL 2 BASIC16.92■□□□□ 0.3
COL6A6A6NMZ7 FBXW8-201ENST00000309909 2343 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
COL6A6A6NMZ7 TBL1Y-201ENST00000346432 2312 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
COL6A6A6NMZ7 ARSA-202ENST00000356098 1895 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
COL6A6A6NMZ7 UBE2Z-201ENST00000360943 3122 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
COL6A6A6NMZ7 NANS-201ENST00000210444 1170 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
COL6A6A6NMZ7 S100A3-201ENST00000368712 579 ntAPPRIS P1 TSL 3 BASIC16.92■□□□□ 0.3
COL6A6A6NMZ7 GMDS-AS1-205ENST00000529893 900 ntTSL 5 BASIC16.92■□□□□ 0.3
COL6A6A6NMZ7 AC027796.4-201ENST00000575741 874 ntTSL 5 BASIC16.92■□□□□ 0.3
COL6A6A6NMZ7 MIR3687-2-201ENST00000577708 61 ntBASIC16.92■□□□□ 0.3
COL6A6A6NMZ7 MIR3687-1-201ENST00000614492 61 ntBASIC16.92■□□□□ 0.3
COL6A6A6NMZ7 AL157832.3-201ENST00000635764 1005 ntTSL 5 BASIC16.92■□□□□ 0.3
COL6A6A6NMZ7 DVL1-204ENST00000610709 2268 ntTSL 2 BASIC16.92■□□□□ 0.3
COL6A6A6NMZ7 EEF1AKMT2-201ENST00000368836 1462 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
COL6A6A6NMZ7 GALNT10-202ENST00000377661 3778 ntTSL 5 BASIC16.92■□□□□ 0.3
COL6A6A6NMZ7 SPPL2B-212ENST00000618220 2459 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
COL6A6A6NMZ7 ADAM9-203ENST00000466936 2053 ntTSL 2 BASIC16.92■□□□□ 0.3
COL6A6A6NMZ7 GRK2-201ENST00000308595 3466 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
COL6A6A6NMZ7 COL23A1-201ENST00000390654 3061 ntAPPRIS P2 TSL 5 BASIC16.91■□□□□ 0.3
COL6A6A6NMZ7 KRTCAP2-201ENST00000295682 552 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
COL6A6A6NMZ7 SMN1-201ENST00000351205 900 ntAPPRIS P3 TSL 1 (best) BASIC16.91■□□□□ 0.3
COL6A6A6NMZ7 SMN2-201ENST00000380741 900 ntAPPRIS P4 TSL 1 (best) BASIC16.91■□□□□ 0.3
COL6A6A6NMZ7 LBH-203ENST00000404397 543 ntTSL 4 BASIC16.91■□□□□ 0.3
COL6A6A6NMZ7 COA5-202ENST00000409997 557 ntTSL 4 BASIC16.91■□□□□ 0.3
COL6A6A6NMZ7 MIR503HG-203ENST00000441492 649 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
COL6A6A6NMZ7 AC027117.2-201ENST00000522768 510 ntTSL 3 BASIC16.91■□□□□ 0.3
COL6A6A6NMZ7 AC018521.5-202ENST00000577279 374 ntTSL 3 BASIC16.91■□□□□ 0.3
COL6A6A6NMZ7 AC018521.5-201ENST00000582787 496 ntTSL 2 BASIC16.91■□□□□ 0.3
COL6A6A6NMZ7 LINC01842-201ENST00000588275 768 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
COL6A6A6NMZ7 FOXP1-223ENST00000622151 429 ntTSL 3 BASIC16.91■□□□□ 0.3
COL6A6A6NMZ7 AC124864.1-201ENST00000623408 392 ntBASIC16.91■□□□□ 0.3
COL6A6A6NMZ7 SMN2-216ENST00000638794 846 ntAPPRIS ALT2 TSL 5 BASIC16.91■□□□□ 0.3
COL6A6A6NMZ7 LRRC23-209ENST00000443597 1628 ntAPPRIS P4 TSL 1 (best) BASIC16.91■□□□□ 0.3
COL6A6A6NMZ7 LCAT-201ENST00000264005 1507 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 26.2 ms