Protein–RNA interactions for Protein: A0A0D9SF12

CCDC163, Coiled-coil domain-containing 163, humanhuman

Predictions only

Length 145 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC163A0A0D9SF12 PHACTR2-203ENST00000367584 2490 ntAPPRIS ALT2 TSL 5 BASIC18.62■□□□□ 0.57
CCDC163A0A0D9SF12 DGUOK-201ENST00000264093 1144 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CCDC163A0A0D9SF12 AKR1C7P-201ENST00000305623 895 ntBASIC18.62■□□□□ 0.57
CCDC163A0A0D9SF12 DGUOK-202ENST00000348222 880 ntTSL 2 BASIC18.62■□□□□ 0.57
CCDC163A0A0D9SF12 ENSA-205ENST00000361532 792 ntTSL 2 BASIC18.62■□□□□ 0.57
CCDC163A0A0D9SF12 PRSS38-201ENST00000366757 1267 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CCDC163A0A0D9SF12 EDN3-203ENST00000371025 1153 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
CCDC163A0A0D9SF12 MIR564-202ENST00000385049 94 ntBASIC18.62■□□□□ 0.57
CCDC163A0A0D9SF12 AC080013.1-203ENST00000468242 720 ntTSL 5 BASIC18.62■□□□□ 0.57
CCDC163A0A0D9SF12 AC080013.1-201ENST00000495318 566 ntTSL 4 BASIC18.62■□□□□ 0.57
CCDC163A0A0D9SF12 AL356056.2-201ENST00000506914 669 ntTSL 4 BASIC18.62■□□□□ 0.57
CCDC163A0A0D9SF12 TMEM218-203ENST00000526175 972 ntAPPRIS P1 TSL 3 BASIC18.62■□□□□ 0.57
CCDC163A0A0D9SF12 SYNGR4-204ENST00000601610 859 ntTSL 3 BASIC18.62■□□□□ 0.57
CCDC163A0A0D9SF12 AL592071.1-201ENST00000611956 408 ntBASIC18.62■□□□□ 0.57
CCDC163A0A0D9SF12 DGUOK-208ENST00000629438 1029 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
CCDC163A0A0D9SF12 TRIM13-206ENST00000457662 1489 ntAPPRIS P3 TSL 1 (best) BASIC18.62■□□□□ 0.57
CCDC163A0A0D9SF12 TPD52-211ENST00000519303 1594 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
CCDC163A0A0D9SF12 C11orf49-201ENST00000278460 1645 ntAPPRIS P3 TSL 1 (best) BASIC18.62■□□□□ 0.57
CCDC163A0A0D9SF12 ACTL6A-201ENST00000392662 1899 ntTSL 2 BASIC18.62■□□□□ 0.57
CCDC163A0A0D9SF12 SPPL2B-212ENST00000618220 2459 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
CCDC163A0A0D9SF12 TAF7-201ENST00000313368 2334 ntAPPRIS P1 BASIC18.61■□□□□ 0.57
CCDC163A0A0D9SF12 RTBDN-207ENST00000589272 2076 ntTSL 2 BASIC18.61■□□□□ 0.57
CCDC163A0A0D9SF12 MELTF-202ENST00000296351 1650 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
CCDC163A0A0D9SF12 CDK4-202ENST00000312990 1650 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
CCDC163A0A0D9SF12 STARD3-209ENST00000544210 1666 ntTSL 2 BASIC18.61■□□□□ 0.57
CCDC163A0A0D9SF12 IL34-201ENST00000288098 1607 ntAPPRIS P2 TSL 1 (best) BASIC18.61■□□□□ 0.57
CCDC163A0A0D9SF12 ZNF652-202ENST00000430262 4701 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CCDC163A0A0D9SF12 RCC2P3-201ENST00000418112 1537 ntBASIC18.61■□□□□ 0.57
CCDC163A0A0D9SF12 KRT89P-201ENST00000620027 1478 ntBASIC18.61■□□□□ 0.57
CCDC163A0A0D9SF12 RNASEH2A-201ENST00000221486 1165 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CCDC163A0A0D9SF12 PRMT2-201ENST00000291705 1011 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
CCDC163A0A0D9SF12 NECTIN3-AS1-204ENST00000476301 568 ntTSL 4 BASIC18.61■□□□□ 0.57
CCDC163A0A0D9SF12 BET1L-206ENST00000486280 665 ntTSL 3 BASIC18.61■□□□□ 0.57
CCDC163A0A0D9SF12 NCAM1-AS1-202ENST00000533638 618 ntTSL 4 BASIC18.61■□□□□ 0.57
CCDC163A0A0D9SF12 AC007220.1-201ENST00000572466 1055 ntTSL 3 BASIC18.61■□□□□ 0.57
CCDC163A0A0D9SF12 AL162497.1-201ENST00000615635 518 ntTSL 4 BASIC18.61■□□□□ 0.57
CCDC163A0A0D9SF12 LINC01714-202ENST00000635451 896 ntTSL 5 BASIC18.61■□□□□ 0.57
CCDC163A0A0D9SF12 PTPN11-207ENST00000639857 801 ntTSL 5 BASIC18.61■□□□□ 0.57
CCDC163A0A0D9SF12 SH2B1-204ENST00000395532 2529 ntAPPRIS P1 TSL 2 BASIC18.61■□□□□ 0.57
CCDC163A0A0D9SF12 SLC44A3-203ENST00000446120 2094 ntTSL 2 BASIC18.61■□□□□ 0.57
CCDC163A0A0D9SF12 THTPA-202ENST00000404535 1779 ntAPPRIS P1 TSL 2 BASIC18.6■□□□□ 0.57
CCDC163A0A0D9SF12 PCED1A-201ENST00000356872 1706 ntTSL 2 BASIC18.6■□□□□ 0.57
CCDC163A0A0D9SF12 ACBD5-201ENST00000375888 1747 ntAPPRIS ALT2 TSL 5 BASIC18.6■□□□□ 0.57
CCDC163A0A0D9SF12 MRPS5-201ENST00000272418 1652 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CCDC163A0A0D9SF12 NCKAP1-201ENST00000360982 4989 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
CCDC163A0A0D9SF12 HAUS4-218ENST00000555986 1626 ntTSL 5 BASIC18.6■□□□□ 0.57
CCDC163A0A0D9SF12 WDR18-202ENST00000585809 1608 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CCDC163A0A0D9SF12 ZHX3-212ENST00000558993 1528 ntTSL 5 BASIC18.6■□□□□ 0.57
CCDC163A0A0D9SF12 PDLIM2-206ENST00000409141 1463 ntTSL 2 BASIC18.6■□□□□ 0.57
CCDC163A0A0D9SF12 PBK-203ENST00000522944 1499 ntTSL 2 BASIC18.6■□□□□ 0.57
CCDC163A0A0D9SF12 AC073188.6-202ENST00000616616 2281 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
CCDC163A0A0D9SF12 SIT1-201ENST00000259608 1231 ntAPPRIS P2 TSL 1 (best) BASIC18.6■□□□□ 0.57
CCDC163A0A0D9SF12 NDUFB9-201ENST00000276689 711 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CCDC163A0A0D9SF12 TSPY2-201ENST00000320701 1161 ntAPPRIS P5 TSL 1 (best) BASIC18.6■□□□□ 0.57
CCDC163A0A0D9SF12 PTRHD1-201ENST00000328379 1105 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CCDC163A0A0D9SF12 SPIN2B-202ENST00000333933 1258 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CCDC163A0A0D9SF12 ROMO1-204ENST00000374078 498 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CCDC163A0A0D9SF12 CDC26-201ENST00000374206 872 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CCDC163A0A0D9SF12 PMEPA1-204ENST00000395814 800 ntTSL 3 BASIC18.6■□□□□ 0.57
CCDC163A0A0D9SF12 POM121L3P-201ENST00000419331 1163 ntBASIC18.6■□□□□ 0.57
CCDC163A0A0D9SF12 TSPY2-203ENST00000429039 779 ntAPPRIS ALT2 TSL 2 BASIC18.6■□□□□ 0.57
CCDC163A0A0D9SF12 MIR130B-201ENST00000498589 1093 ntTSL 5 BASIC18.6■□□□□ 0.57
CCDC163A0A0D9SF12 AC034213.1-201ENST00000507681 806 ntTSL 3 BASIC18.6■□□□□ 0.57
CCDC163A0A0D9SF12 CDV3-207ENST00000508481 661 ntTSL 3 BASIC18.6■□□□□ 0.57
CCDC163A0A0D9SF12 CNOT8-225ENST00000524105 904 ntTSL 2 BASIC18.6■□□□□ 0.57
CCDC163A0A0D9SF12 ATP5G2-204ENST00000549164 745 ntAPPRIS P1 TSL 3 BASIC18.6■□□□□ 0.57
CCDC163A0A0D9SF12 AP001005.1-201ENST00000571755 1248 ntBASIC18.6■□□□□ 0.57
CCDC163A0A0D9SF12 TEN1-204ENST00000588202 862 ntTSL 3 BASIC18.6■□□□□ 0.57
CCDC163A0A0D9SF12 ATP5G2-209ENST00000602871 668 ntAPPRIS P1 TSL 2 BASIC18.6■□□□□ 0.57
CCDC163A0A0D9SF12 BCL2L12-210ENST00000611631 1259 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
CCDC163A0A0D9SF12 AC139530.3-201ENST00000620344 690 ntBASIC18.6■□□□□ 0.57
CCDC163A0A0D9SF12 FAM129C-203ENST00000449408 2004 ntAPPRIS ALT2 TSL 2 BASIC18.6■□□□□ 0.57
CCDC163A0A0D9SF12 AC008556.1-201ENST00000610908 2040 ntBASIC18.6■□□□□ 0.57
CCDC163A0A0D9SF12 KLC2-207ENST00000421552 2721 ntTSL 5 BASIC18.6■□□□□ 0.57
CCDC163A0A0D9SF12 PRR16-201ENST00000379551 1826 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
CCDC163A0A0D9SF12 KCNQ5-201ENST00000342056 6688 ntAPPRIS ALT1 TSL 5 BASIC18.6■□□□□ 0.57
CCDC163A0A0D9SF12 TMEM222-201ENST00000374076 1599 ntAPPRIS P2 TSL 1 (best) BASIC18.59■□□□□ 0.57
CCDC163A0A0D9SF12 EDNRA-206ENST00000511804 1569 ntTSL 2 BASIC18.59■□□□□ 0.57
CCDC163A0A0D9SF12 MYBL2-202ENST00000396863 2704 ntTSL 2 BASIC18.59■□□□□ 0.57
CCDC163A0A0D9SF12 CCSAP-203ENST00000366687 5089 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
CCDC163A0A0D9SF12 NOL3-201ENST00000268605 1394 ntAPPRIS P3 TSL 3 BASIC18.59■□□□□ 0.57
CCDC163A0A0D9SF12 SSX2IP-210ENST00000605755 1933 ntTSL 2 BASIC18.59■□□□□ 0.57
CCDC163A0A0D9SF12 GABARAPL3-202ENST00000624044 1851 ntBASIC18.59■□□□□ 0.57
CCDC163A0A0D9SF12 FFAR1-201ENST00000246553 2311 ntAPPRIS P1 BASIC18.59■□□□□ 0.57
CCDC163A0A0D9SF12 SNRPA1-201ENST00000254193 1055 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
CCDC163A0A0D9SF12 NDUFA12-201ENST00000327772 635 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
CCDC163A0A0D9SF12 S100A3-201ENST00000368712 579 ntAPPRIS P1 TSL 3 BASIC18.59■□□□□ 0.57
CCDC163A0A0D9SF12 RWDD3-202ENST00000370202 1235 ntAPPRIS P1 TSL 3 BASIC18.59■□□□□ 0.57
CCDC163A0A0D9SF12 TLE1-202ENST00000376484 666 ntTSL 3 BASIC18.59■□□□□ 0.57
CCDC163A0A0D9SF12 SLC9A3R1-202ENST00000413388 1285 ntTSL 2 BASIC18.59■□□□□ 0.57
CCDC163A0A0D9SF12 TSPY12P-201ENST00000421279 868 ntBASIC18.59■□□□□ 0.57
CCDC163A0A0D9SF12 ELP6-205ENST00000439305 880 ntTSL 2 BASIC18.59■□□□□ 0.57
CCDC163A0A0D9SF12 PRSS21-202ENST00000450020 1106 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
CCDC163A0A0D9SF12 NDUFB9-204ENST00000518008 789 ntTSL 2 BASIC18.59■□□□□ 0.57
CCDC163A0A0D9SF12 PPOX-214ENST00000535223 664 ntTSL 3 BASIC18.59■□□□□ 0.57
CCDC163A0A0D9SF12 AL162171.1-201ENST00000556328 718 ntTSL 3 BASIC18.59■□□□□ 0.57
CCDC163A0A0D9SF12 AC011511.2-201ENST00000592893 918 ntTSL 3 BASIC18.59■□□□□ 0.57
CCDC163A0A0D9SF12 AC024563.2-201ENST00000603282 481 ntBASIC18.59■□□□□ 0.57
CCDC163A0A0D9SF12 DNASE1L2-206ENST00000613572 1260 ntAPPRIS P1 TSL 5 BASIC18.59■□□□□ 0.57
CCDC163A0A0D9SF12 NME4-212ENST00000621774 904 ntTSL 3 BASIC18.59■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 19.2 ms