Protein–RNA interactions for Protein: Q9H2S5

RNF39, RING finger protein 39, humanhuman

Predictions only

Length 420 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF39Q9H2S5 RNU4-47P-201ENST00000410876 114 ntBASIC3.52□□□□□ -1.85
RNF39Q9H2S5 ATXN3-248ENST00000558190 26812 ntAPPRIS P1 TSL 1 (best) BASIC3.52□□□□□ -1.85
RNF39Q9H2S5 AC025164.2-202ENST00000499685 5699 ntTSL 3 BASIC3.52□□□□□ -1.85
RNF39Q9H2S5 CHD9-213ENST00000564845 11504 ntAPPRIS P1 TSL 1 (best) BASIC3.52□□□□□ -1.85
RNF39Q9H2S5 DOCK7-204ENST00000454575 6985 ntAPPRIS ALT2 TSL 1 (best) BASIC3.52□□□□□ -1.85
RNF39Q9H2S5 SULT1B1-201ENST00000310613 7115 ntAPPRIS P1 TSL 1 (best) BASIC3.51□□□□□ -1.85
RNF39Q9H2S5 OR2L2-202ENST00000641771 4300 ntAPPRIS P1 BASIC3.51□□□□□ -1.85
RNF39Q9H2S5 RNU1-119P-201ENST00000391122 165 ntBASIC3.51□□□□□ -1.85
RNF39Q9H2S5 AC036111.3-201ENST00000526389 112 ntBASIC3.51□□□□□ -1.85
RNF39Q9H2S5 MIR4513-201ENST00000581077 86 ntBASIC3.51□□□□□ -1.85
RNF39Q9H2S5 ADAT2-203ENST00000606514 6651 ntTSL 1 (best) BASIC3.51□□□□□ -1.85
RNF39Q9H2S5 MIR30E-201ENST00000362104 92 ntBASIC3.5□□□□□ -1.85
RNF39Q9H2S5 Y_RNA.139-201ENST00000363464 102 ntBASIC3.5□□□□□ -1.85
RNF39Q9H2S5 RNA5SP229-201ENST00000410809 99 ntBASIC3.5□□□□□ -1.85
RNF39Q9H2S5 RN7SL863P-201ENST00000462370 296 ntBASIC3.5□□□□□ -1.85
RNF39Q9H2S5 AC015712.3-201ENST00000559380 164 ntBASIC3.5□□□□□ -1.85
RNF39Q9H2S5 MIR4325-201ENST00000583049 90 ntBASIC3.5□□□□□ -1.85
RNF39Q9H2S5 AC243829.3-201ENST00000622177 108 ntBASIC3.5□□□□□ -1.85
RNF39Q9H2S5 MIR4317-201ENST00000637586 65 ntBASIC3.5□□□□□ -1.85
RNF39Q9H2S5 NUFIP2-201ENST00000225388 10850 ntAPPRIS P1 TSL 1 (best) BASIC3.49□□□□□ -1.85
RNF39Q9H2S5 ABCA5-208ENST00000588877 6525 ntAPPRIS P1 TSL 1 (best) BASIC3.49□□□□□ -1.85
RNF39Q9H2S5 OR5M1-202ENST00000641076 4302 ntAPPRIS P1 BASIC3.49□□□□□ -1.85
RNF39Q9H2S5 PCDH15-208ENST00000395432 6901 ntTSL 5 BASIC3.49□□□□□ -1.85
RNF39Q9H2S5 AKAP6-201ENST00000280979 15006 ntAPPRIS P1 TSL 1 (best) BASIC3.49□□□□□ -1.85
RNF39Q9H2S5 MIR652-201ENST00000385278 98 ntBASIC3.49□□□□□ -1.85
RNF39Q9H2S5 S100A11P2-201ENST00000467589 312 ntBASIC3.49□□□□□ -1.85
RNF39Q9H2S5 RNA5SP341-201ENST00000516261 117 ntBASIC3.49□□□□□ -1.85
RNF39Q9H2S5 MIR3664-201ENST00000579074 99 ntBASIC3.49□□□□□ -1.85
RNF39Q9H2S5 IL6ST-201ENST00000336909 8776 ntAPPRIS P1 TSL 2 BASIC3.49□□□□□ -1.85
RNF39Q9H2S5 LCORL-202ENST00000382224 4984 ntAPPRIS ALT2 TSL 5 BASIC3.49□□□□□ -1.85
RNF39Q9H2S5 FPGT-TNNI3K-202ENST00000370895 7566 ntTSL 2 BASIC3.48□□□□□ -1.85
RNF39Q9H2S5 MIR516B1-201ENST00000385211 90 ntBASIC3.48□□□□□ -1.85
RNF39Q9H2S5 ERBIN-201ENST00000284037 8647 ntTSL 1 (best) BASIC3.48□□□□□ -1.85
RNF39Q9H2S5 WNK3-205ENST00000620763 5400 ntTSL 5 BASIC3.48□□□□□ -1.85
RNF39Q9H2S5 KIAA1551-201ENST00000312561 6230 ntAPPRIS P1 TSL 1 (best) BASIC3.48□□□□□ -1.85
RNF39Q9H2S5 DNAH8-202ENST00000359357 13864 ntAPPRIS ALT2 TSL 2 BASIC3.47□□□□□ -1.85
RNF39Q9H2S5 SNORD1A-201ENST00000364968 72 ntBASIC3.47□□□□□ -1.85
RNF39Q9H2S5 Y_RNA.500-201ENST00000384466 111 ntBASIC3.47□□□□□ -1.85
RNF39Q9H2S5 MIR3074-201ENST00000384885 81 ntBASIC3.47□□□□□ -1.85
RNF39Q9H2S5 AL135923.1-201ENST00000413066 196 ntTSL 3 BASIC3.47□□□□□ -1.85
RNF39Q9H2S5 RNU7-154P-201ENST00000516194 62 ntBASIC3.47□□□□□ -1.85
RNF39Q9H2S5 MIR4804-201ENST00000581683 73 ntBASIC3.47□□□□□ -1.85
RNF39Q9H2S5 AL136317.1-201ENST00000612653 226 ntBASIC3.47□□□□□ -1.85
RNF39Q9H2S5 AL773524.1-201ENST00000614065 229 ntBASIC3.47□□□□□ -1.85
RNF39Q9H2S5 AL157834.3-201ENST00000615543 103 ntBASIC3.47□□□□□ -1.85
RNF39Q9H2S5 SLC5A3-201ENST00000381151 11576 ntAPPRIS P1 TSL 1 (best) BASIC3.47□□□□□ -1.85
RNF39Q9H2S5 CCDC14-221ENST00000489746 6476 ntAPPRIS ALT2 TSL 1 (best) BASIC3.47□□□□□ -1.85
RNF39Q9H2S5 SOCS4-201ENST00000339298 6667 ntAPPRIS P1 TSL 1 (best) BASIC3.46□□□□□ -1.86
RNF39Q9H2S5 LPP-220ENST00000617246 18220 ntAPPRIS P1 TSL 1 (best) BASIC3.46□□□□□ -1.86
RNF39Q9H2S5 MKLN1-201ENST00000352689 11156 ntAPPRIS P1 TSL 1 (best) BASIC3.46□□□□□ -1.86
RNF39Q9H2S5 MIR422A-201ENST00000362286 90 ntBASIC3.46□□□□□ -1.86
RNF39Q9H2S5 JTBP1-201ENST00000441314 247 ntBASIC3.46□□□□□ -1.86
RNF39Q9H2S5 MIR6852-201ENST00000621699 66 ntBASIC3.46□□□□□ -1.86
RNF39Q9H2S5 RNF219-AS1-214ENST00000607862 6001 ntTSL 1 (best) BASIC3.46□□□□□ -1.86
RNF39Q9H2S5 ARHGAP12-201ENST00000311380 4625 ntTSL 1 (best) BASIC3.45□□□□□ -1.86
RNF39Q9H2S5 Y_RNA.407-201ENST00000383986 113 ntBASIC3.45□□□□□ -1.86
RNF39Q9H2S5 SNORA7.4-201ENST00000384249 137 ntBASIC3.45□□□□□ -1.86
RNF39Q9H2S5 MIR548AA1-201ENST00000384971 97 ntBASIC3.45□□□□□ -1.86
RNF39Q9H2S5 RN7SL75P-201ENST00000461926 281 ntBASIC3.45□□□□□ -1.86
RNF39Q9H2S5 RPL23AP94-201ENST00000512518 302 ntBASIC3.45□□□□□ -1.86
RNF39Q9H2S5 AC243829.6-201ENST00000612652 106 ntBASIC3.45□□□□□ -1.86
RNF39Q9H2S5 GS1-279B7.1-204ENST00000641809 378 ntBASIC3.45□□□□□ -1.86
RNF39Q9H2S5 C9orf84-204ENST00000394777 4955 ntAPPRIS ALT2 TSL 1 (best) BASIC3.45□□□□□ -1.86
RNF39Q9H2S5 ATM-203ENST00000452508 12954 ntAPPRIS P1 TSL 1 (best) BASIC3.45□□□□□ -1.86
RNF39Q9H2S5 PRKD3-201ENST00000234179 5900 ntAPPRIS P1 TSL 1 (best) BASIC3.45□□□□□ -1.86
RNF39Q9H2S5 PTBP2-211ENST00000609116 12014 ntAPPRIS ALT1 TSL 1 (best) BASIC3.44□□□□□ -1.86
RNF39Q9H2S5 TAB3-203ENST00000378930 6255 ntAPPRIS P1 TSL 1 (best) BASIC3.44□□□□□ -1.86
RNF39Q9H2S5 HIST1H2APS3-201ENST00000403259 134 ntBASIC3.44□□□□□ -1.86
RNF39Q9H2S5 RNU7-56P-201ENST00000458744 62 ntBASIC3.44□□□□□ -1.86
RNF39Q9H2S5 MIR2114-201ENST00000516645 80 ntBASIC3.44□□□□□ -1.86
RNF39Q9H2S5 ADARB1-213ENST00000611195 159 ntTSL 5 BASIC3.44□□□□□ -1.86
RNF39Q9H2S5 AGL-205ENST00000370163 7166 ntAPPRIS P1 TSL 1 (best) BASIC3.44□□□□□ -1.86
RNF39Q9H2S5 SUGT1-201ENST00000310528 14131 ntAPPRIS P3 TSL 1 (best) BASIC3.43□□□□□ -1.86
RNF39Q9H2S5 USP45-208ENST00000500704 5826 ntAPPRIS P1 TSL 5 BASIC3.43□□□□□ -1.86
RNF39Q9H2S5 SNORD111-201ENST00000408139 94 ntBASIC3.43□□□□□ -1.86
RNF39Q9H2S5 CPD-202ENST00000543464 4007 ntTSL 2 BASIC3.43□□□□□ -1.86
RNF39Q9H2S5 RTTN-201ENST00000255674 6960 ntTSL 5 BASIC3.43□□□□□ -1.86
RNF39Q9H2S5 CACNB4-238ENST00000636901 7706 ntTSL 5 BASIC3.42□□□□□ -1.86
RNF39Q9H2S5 SAMD9-201ENST00000379958 6852 ntAPPRIS P1 TSL 1 (best) BASIC3.42□□□□□ -1.86
RNF39Q9H2S5 SNORA7.1-201ENST00000363750 139 ntBASIC3.42□□□□□ -1.86
RNF39Q9H2S5 UBE2DNL-203ENST00000474922 222 ntBASIC3.42□□□□□ -1.86
RNF39Q9H2S5 C5orf42-205ENST00000508244 11062 ntAPPRIS P2 TSL 5 BASIC3.41□□□□□ -1.86
RNF39Q9H2S5 SNORA54-201ENST00000384281 123 ntBASIC3.41□□□□□ -1.86
RNF39Q9H2S5 DICER1-203ENST00000526495 10331 ntAPPRIS P1 TSL 5 BASIC3.41□□□□□ -1.86
RNF39Q9H2S5 BAZ2B-204ENST00000392783 8289 ntAPPRIS P1 TSL 5 BASIC3.41□□□□□ -1.86
RNF39Q9H2S5 PPIP5K2-203ENST00000414217 5842 ntAPPRIS P3 TSL 1 (best) BASIC3.41□□□□□ -1.86
RNF39Q9H2S5 CFAP44-202ENST00000393845 7069 ntAPPRIS ALT2 TSL 5 BASIC3.4□□□□□ -1.86
RNF39Q9H2S5 FAR1-204ENST00000532502 5820 ntTSL 2 BASIC3.4□□□□□ -1.86
RNF39Q9H2S5 SNORA44-201ENST00000384584 132 ntBASIC3.4□□□□□ -1.87
RNF39Q9H2S5 IGKV1OR2-6-201ENST00000603485 277 ntBASIC3.4□□□□□ -1.87
RNF39Q9H2S5 AL033523.1-201ENST00000605153 153 ntBASIC3.4□□□□□ -1.87
RNF39Q9H2S5 AC012531.5-201ENST00000611375 151 ntBASIC3.4□□□□□ -1.87
RNF39Q9H2S5 AC244669.1-204ENST00000621564 178 ntBASIC3.4□□□□□ -1.87
RNF39Q9H2S5 SYNE1-201ENST00000341594 26584 ntAPPRIS ALT2 TSL 5 BASIC3.4□□□□□ -1.87
RNF39Q9H2S5 PCDH11Y-201ENST00000215473 4595 ntAPPRIS ALT2 TSL 1 (best) BASIC3.39□□□□□ -1.87
RNF39Q9H2S5 SYNE1-207ENST00000367255 27748 ntAPPRIS P4 TSL 1 (best) BASIC3.39□□□□□ -1.87
RNF39Q9H2S5 SNORD115-25-201ENST00000362619 82 ntBASIC3.39□□□□□ -1.87
RNF39Q9H2S5 UBE2W-203ENST00000517608 8426 ntTSL 1 (best) BASIC3.39□□□□□ -1.87
RNF39Q9H2S5 USP9Y-201ENST00000338981 10036 ntAPPRIS P1 TSL 1 (best) BASIC3.39□□□□□ -1.87
RNF39Q9H2S5 VPS13C-203ENST00000395896 14579 ntAPPRIS ALT2 TSL 1 (best) BASIC3.38□□□□□ -1.87
Retrieved 100 of 98,524 protein–RNA pairs in 106.9 ms