Protein–RNA interactions for Protein: O43196

MSH5, MutS protein homolog 5, humanhuman

Predictions only

Length 834 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5O43196 DPP10-205ENST00000410059 6278 ntAPPRIS ALT2 TSL 1 (best) BASIC4.39□□□□□ -1.71
MSH5O43196 DNAH8-202ENST00000359357 13864 ntAPPRIS ALT2 TSL 2 BASIC4.39□□□□□ -1.71
MSH5O43196 Y_RNA.32-201ENST00000362589 110 ntBASIC4.39□□□□□ -1.71
MSH5O43196 RNU6-828P-201ENST00000364876 107 ntBASIC4.39□□□□□ -1.71
MSH5O43196 MIR519A2-201ENST00000384990 87 ntBASIC4.39□□□□□ -1.71
MSH5O43196 MIR513A1-201ENST00000385138 129 ntBASIC4.39□□□□□ -1.71
MSH5O43196 RNU6-360P-201ENST00000390944 104 ntBASIC4.39□□□□□ -1.71
MSH5O43196 RNU6-1326P-201ENST00000391262 107 ntBASIC4.39□□□□□ -1.71
MSH5O43196 SNORA31.14-201ENST00000516728 116 ntBASIC4.39□□□□□ -1.71
MSH5O43196 MIR449A-201ENST00000362113 91 ntBASIC4.38□□□□□ -1.71
MSH5O43196 TRAJ50-201ENST00000390487 60 ntAPPRIS P1 BASIC4.38□□□□□ -1.71
MSH5O43196 AL033523.1-201ENST00000605153 153 ntBASIC4.38□□□□□ -1.71
MSH5O43196 SNORA50A-202ENST00000629536 136 ntBASIC4.38□□□□□ -1.71
MSH5O43196 Y_RNA.345-201ENST00000365384 92 ntBASIC4.37□□□□□ -1.71
MSH5O43196 MIR517C-201ENST00000385103 95 ntBASIC4.37□□□□□ -1.71
MSH5O43196 RNU6ATAC40P-201ENST00000408580 137 ntBASIC4.37□□□□□ -1.71
MSH5O43196 AC245166.1-201ENST00000521012 253 ntBASIC4.37□□□□□ -1.71
MSH5O43196 ATP11C-202ENST00000361648 6010 ntAPPRIS ALT2 TSL 1 (best) BASIC4.37□□□□□ -1.71
MSH5O43196 PHC3-215ENST00000495893 12666 ntAPPRIS P1 TSL 1 (best) BASIC4.37□□□□□ -1.71
MSH5O43196 TAB3-203ENST00000378930 6255 ntAPPRIS P1 TSL 1 (best) BASIC4.37□□□□□ -1.71
MSH5O43196 LIG4-205ENST00000614526 3884 ntTSL 2 BASIC4.36□□□□□ -1.71
MSH5O43196 HIF1A-204ENST00000539097 3956 ntTSL 1 (best) BASIC4.36□□□□□ -1.71
MSH5O43196 CREBRF-201ENST00000296953 7778 ntAPPRIS P1 TSL 1 (best) BASIC4.36□□□□□ -1.71
MSH5O43196 NEB-204ENST00000409198 20637 ntAPPRIS P3 TSL 5 BASIC4.36□□□□□ -1.71
MSH5O43196 RN7SL75P-201ENST00000461926 281 ntBASIC4.36□□□□□ -1.71
MSH5O43196 SNORA31.2-201ENST00000516019 134 ntBASIC4.36□□□□□ -1.71
MSH5O43196 SNORD59.2-201ENST00000516873 68 ntBASIC4.36□□□□□ -1.71
MSH5O43196 MIR29B1-201ENST00000385015 81 ntBASIC4.35□□□□□ -1.71
MSH5O43196 NEB-220ENST00000618972 26307 ntAPPRIS ALT2 TSL 5 BASIC4.35□□□□□ -1.71
MSH5O43196 OR2L2-202ENST00000641771 4300 ntAPPRIS P1 BASIC4.35□□□□□ -1.71
MSH5O43196 RNA5SP295-201ENST00000362655 121 ntBASIC4.34□□□□□ -1.71
MSH5O43196 SNORA44-201ENST00000384584 132 ntBASIC4.34□□□□□ -1.71
MSH5O43196 SNORA31.17-201ENST00000516953 127 ntBASIC4.34□□□□□ -1.71
MSH5O43196 MIR4672-201ENST00000583126 81 ntBASIC4.34□□□□□ -1.71
MSH5O43196 MIR3616-201ENST00000584070 92 ntBASIC4.34□□□□□ -1.71
MSH5O43196 GHRLOS.1-201ENST00000610995 70 ntBASIC4.34□□□□□ -1.71
MSH5O43196 U6.96-201ENST00000636425 70 ntBASIC4.34□□□□□ -1.71
MSH5O43196 USP15-203ENST00000353364 14950 ntAPPRIS P3 TSL 1 (best) BASIC4.34□□□□□ -1.72
MSH5O43196 PHTF2-202ENST00000275575 4541 ntTSL 1 (best) BASIC4.34□□□□□ -1.72
MSH5O43196 RNU7-102P-201ENST00000458948 62 ntBASIC4.33□□□□□ -1.72
MSH5O43196 XIST_intron.1-201ENST00000619444 68 ntBASIC4.33□□□□□ -1.72
MSH5O43196 AC009487.2-201ENST00000420969 6821 ntBASIC4.33□□□□□ -1.72
MSH5O43196 WRN-201ENST00000298139 5215 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
MSH5O43196 MAPK10-322ENST00000641485 4530 ntBASIC4.32□□□□□ -1.72
MSH5O43196 MIR429-201ENST00000362106 83 ntBASIC4.32□□□□□ -1.72
MSH5O43196 RNA5SP432-201ENST00000362480 116 ntBASIC4.32□□□□□ -1.72
MSH5O43196 RNU4-47P-201ENST00000410876 114 ntBASIC4.32□□□□□ -1.72
MSH5O43196 MIR4676-201ENST00000583078 72 ntBASIC4.32□□□□□ -1.72
MSH5O43196 ADARB1-213ENST00000611195 159 ntTSL 5 BASIC4.32□□□□□ -1.72
MSH5O43196 U2.18-201ENST00000622185 84 ntBASIC4.32□□□□□ -1.72
MSH5O43196 AC007218.2-201ENST00000636913 179 ntTSL 5 BASIC4.32□□□□□ -1.72
MSH5O43196 RICTOR-201ENST00000296782 7505 ntTSL 1 (best) BASIC4.32□□□□□ -1.72
MSH5O43196 CACNB4-228ENST00000636598 7808 ntTSL 5 BASIC4.32□□□□□ -1.72
MSH5O43196 SAMD9-201ENST00000379958 6852 ntAPPRIS P1 TSL 1 (best) BASIC4.32□□□□□ -1.72
MSH5O43196 CPD-202ENST00000543464 4007 ntTSL 2 BASIC4.31□□□□□ -1.72
MSH5O43196 USH2A-201ENST00000307340 18883 ntAPPRIS P1 TSL 1 (best) BASIC4.31□□□□□ -1.72
MSH5O43196 MIR4474-201ENST00000579189 78 ntBASIC4.31□□□□□ -1.72
MSH5O43196 ATP2B1-201ENST00000261173 6777 ntAPPRIS P1 TSL 1 (best) BASIC4.31□□□□□ -1.72
MSH5O43196 KCNH7-204ENST00000618399 3713 ntTSL 5 BASIC4.3□□□□□ -1.72
MSH5O43196 RNU6-458P-201ENST00000384179 107 ntBASIC4.3□□□□□ -1.72
MSH5O43196 MIR518A2-201ENST00000384966 87 ntBASIC4.3□□□□□ -1.72
MSH5O43196 SNORA48.8-201ENST00000391324 134 ntBASIC4.3□□□□□ -1.72
MSH5O43196 UBBP3-201ENST00000445497 241 ntBASIC4.3□□□□□ -1.72
MSH5O43196 U6.58-201ENST00000613107 107 ntBASIC4.3□□□□□ -1.72
MSH5O43196 uc_338.16-201ENST00000621804 95 ntBASIC4.3□□□□□ -1.72
MSH5O43196 AC027335.2-201ENST00000624030 375 ntBASIC4.3□□□□□ -1.72
MSH5O43196 THOC2-201ENST00000245838 5609 ntAPPRIS P1 TSL 5 BASIC4.3□□□□□ -1.72
MSH5O43196 SOCS4-201ENST00000339298 6667 ntAPPRIS P1 TSL 1 (best) BASIC4.29□□□□□ -1.72
MSH5O43196 SNORD21-201ENST00000383953 95 ntBASIC4.29□□□□□ -1.72
MSH5O43196 MIR1255B2-201ENST00000408618 67 ntBASIC4.29□□□□□ -1.72
MSH5O43196 RNA5SP100-201ENST00000410903 110 ntBASIC4.29□□□□□ -1.72
MSH5O43196 RNA5SP59-201ENST00000410922 110 ntBASIC4.29□□□□□ -1.72
MSH5O43196 AC104332.2-201ENST00000429959 156 ntBASIC4.29□□□□□ -1.72
MSH5O43196 RNA5SP385-201ENST00000515947 110 ntBASIC4.29□□□□□ -1.72
MSH5O43196 5S_rRNA.3-201ENST00000517021 110 ntBASIC4.29□□□□□ -1.72
MSH5O43196 5S_rRNA.19-201ENST00000612131 110 ntBASIC4.29□□□□□ -1.72
MSH5O43196 5S_rRNA.18-201ENST00000621941 110 ntBASIC4.29□□□□□ -1.72
MSH5O43196 TAB2-205ENST00000538427 4240 ntAPPRIS P1 TSL 5 BASIC4.29□□□□□ -1.72
MSH5O43196 EVI5-208ENST00000540033 7436 ntAPPRIS ALT2 TSL 1 (best) BASIC4.28□□□□□ -1.72
MSH5O43196 AL353746.1-201ENST00000566293 6881 ntBASIC4.28□□□□□ -1.72
MSH5O43196 RN7SKP123-201ENST00000410732 291 ntBASIC4.28□□□□□ -1.72
MSH5O43196 AC022018.1-201ENST00000430685 241 ntBASIC4.28□□□□□ -1.72
MSH5O43196 RN7SL20P-201ENST00000488827 297 ntBASIC4.28□□□□□ -1.72
MSH5O43196 ANKAR-209ENST00000520309 4410 ntAPPRIS P1 TSL 5 BASIC4.28□□□□□ -1.72
MSH5O43196 ARHGAP12-201ENST00000311380 4625 ntTSL 1 (best) BASIC4.28□□□□□ -1.72
MSH5O43196 ZFYVE16-202ENST00000505560 6599 ntAPPRIS P1 TSL 1 (best) BASIC4.27□□□□□ -1.73
MSH5O43196 MIR582-201ENST00000365731 98 ntBASIC4.27□□□□□ -1.73
MSH5O43196 RN7SL863P-201ENST00000462370 296 ntBASIC4.27□□□□□ -1.73
MSH5O43196 PRKD3-201ENST00000234179 5900 ntAPPRIS P1 TSL 1 (best) BASIC4.27□□□□□ -1.73
MSH5O43196 ERBIN-204ENST00000380943 6410 ntAPPRIS P3 TSL 1 (best) BASIC4.27□□□□□ -1.73
MSH5O43196 PCDH11Y-201ENST00000215473 4595 ntAPPRIS ALT2 TSL 1 (best) BASIC4.27□□□□□ -1.73
MSH5O43196 MACF1-201ENST00000289893 19141 ntTSL 5 BASIC4.26□□□□□ -1.73
MSH5O43196 RNU6-598P-201ENST00000364017 105 ntBASIC4.26□□□□□ -1.73
MSH5O43196 MIR938-201ENST00000401216 83 ntBASIC4.26□□□□□ -1.73
MSH5O43196 AL591806.2-201ENST00000433122 173 ntBASIC4.26□□□□□ -1.73
MSH5O43196 AC008115.2-201ENST00000539988 241 ntTSL 3 BASIC4.26□□□□□ -1.73
MSH5O43196 PRRG1-202ENST00000449135 4481 ntAPPRIS P1 TSL 1 (best) BASIC4.26□□□□□ -1.73
MSH5O43196 PTBP2-211ENST00000609116 12014 ntAPPRIS ALT1 TSL 1 (best) BASIC4.26□□□□□ -1.73
MSH5O43196 PIK3C2G-201ENST00000266497 4764 ntAPPRIS P1 TSL 1 (best) BASIC4.26□□□□□ -1.73
MSH5O43196 ERBIN-201ENST00000284037 8647 ntTSL 1 (best) BASIC4.26□□□□□ -1.73
Retrieved 100 of 98,524 protein–RNA pairs in 162.9 ms