Protein–RNA interactions for Protein: Q9Y2N7

HIF3A, Hypoxia-inducible factor 3-alpha, humanhuman

Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3AQ9Y2N7 PDE6B-202ENST00000429163 2120 ntTSL 2 BASIC17.03■□□□□ 0.32
HIF3AQ9Y2N7 PSTPIP1-203ENST00000558012 1896 ntAPPRIS P2 TSL 1 (best) BASIC17.03■□□□□ 0.32
HIF3AQ9Y2N7 CNOT9-209ENST00000627282 1621 ntTSL 2 BASIC17.03■□□□□ 0.32
HIF3AQ9Y2N7 ANKS3-202ENST00000446014 2265 ntTSL 5 BASIC17.03■□□□□ 0.32
HIF3AQ9Y2N7 CERS4-201ENST00000251363 1797 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
HIF3AQ9Y2N7 ACADS-201ENST00000242592 1950 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
HIF3AQ9Y2N7 ACOT8-201ENST00000217455 1168 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
HIF3AQ9Y2N7 CENPA-201ENST00000233505 1299 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
HIF3AQ9Y2N7 COX7A1-201ENST00000292907 762 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
HIF3AQ9Y2N7 SIVA1-201ENST00000329967 802 ntAPPRIS P2 TSL 1 (best) BASIC17.03■□□□□ 0.32
HIF3AQ9Y2N7 DERL1-203ENST00000419562 918 ntTSL 2 BASIC17.03■□□□□ 0.32
HIF3AQ9Y2N7 STK24-AS1-201ENST00000434547 1278 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
HIF3AQ9Y2N7 NDUFAF3-204ENST00000451378 774 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
HIF3AQ9Y2N7 AC073111.3-201ENST00000478789 635 ntAPPRIS P1 TSL 3 BASIC17.03■□□□□ 0.32
HIF3AQ9Y2N7 AC020922.2-201ENST00000596786 359 ntTSL 4 BASIC17.03■□□□□ 0.32
HIF3AQ9Y2N7 MMD2-204ENST00000612910 778 ntTSL 5 BASIC17.03■□□□□ 0.32
HIF3AQ9Y2N7 AC103746.1-201ENST00000617440 1133 ntTSL 3 BASIC17.03■□□□□ 0.32
HIF3AQ9Y2N7 LYSMD4-210ENST00000545021 2431 ntTSL 4 BASIC17.03■□□□□ 0.32
HIF3AQ9Y2N7 AC009113.1-201ENST00000570267 2443 ntBASIC17.03■□□□□ 0.32
HIF3AQ9Y2N7 KRT8-217ENST00000619952 2437 ntTSL 2 BASIC17.03■□□□□ 0.32
HIF3AQ9Y2N7 PRRT1-202ENST00000375150 1726 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
HIF3AQ9Y2N7 CYP2D7-203ENST00000433992 1740 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
HIF3AQ9Y2N7 CYP2D7-207ENST00000612115 1734 ntAPPRIS P1 TSL 5 BASIC17.03■□□□□ 0.32
HIF3AQ9Y2N7 AD000671.2-201ENST00000589807 1925 ntAPPRIS P1 TSL 2 BASIC17.03■□□□□ 0.32
HIF3AQ9Y2N7 ARHGAP22-203ENST00000374172 2380 ntTSL 2 BASIC17.03■□□□□ 0.32
HIF3AQ9Y2N7 CACNA1B-205ENST00000371363 9758 ntAPPRIS ALT2 TSL 5 BASIC17.03■□□□□ 0.32
HIF3AQ9Y2N7 FADS1-204ENST00000433932 1690 ntTSL 2 BASIC17.03■□□□□ 0.32
HIF3AQ9Y2N7 AP1AR-202ENST00000309703 2337 ntAPPRIS ALT1 TSL 1 (best) BASIC17.03■□□□□ 0.32
HIF3AQ9Y2N7 SH3BP2-202ENST00000435136 2318 ntAPPRIS P3 TSL 2 BASIC17.03■□□□□ 0.32
HIF3AQ9Y2N7 CARMIL2-201ENST00000334583 4687 ntAPPRIS P3 TSL 1 (best) BASIC17.03■□□□□ 0.32
HIF3AQ9Y2N7 TAL1-202ENST00000371884 4642 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
HIF3AQ9Y2N7 MEN1-205ENST00000377316 2868 ntTSL 5 BASIC17.03■□□□□ 0.32
HIF3AQ9Y2N7 ZNF302-214ENST00000613363 2893 ntAPPRIS ALT2 TSL 4 BASIC17.03■□□□□ 0.32
HIF3AQ9Y2N7 ADORA2A-214ENST00000611543 2412 ntAPPRIS P1 TSL 5 BASIC17.02■□□□□ 0.32
HIF3AQ9Y2N7 NEFHP1-201ENST00000412845 2629 ntBASIC17.02■□□□□ 0.32
HIF3AQ9Y2N7 NPEPL1-203ENST00000525817 1780 ntTSL 2 BASIC17.02■□□□□ 0.32
HIF3AQ9Y2N7 SMARCC2-203ENST00000394023 4271 ntAPPRIS ALT2 TSL 1 (best) BASIC17.02■□□□□ 0.32
HIF3AQ9Y2N7 AC090164.3-201ENST00000610780 2143 ntBASIC17.02■□□□□ 0.32
HIF3AQ9Y2N7 MYBL2-202ENST00000396863 2704 ntTSL 2 BASIC17.02■□□□□ 0.32
HIF3AQ9Y2N7 AC087457.1-201ENST00000503496 2727 ntTSL 2 BASIC17.02■□□□□ 0.32
HIF3AQ9Y2N7 TH-205ENST00000381175 1898 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
HIF3AQ9Y2N7 KATNBL1P6-202ENST00000562413 1466 ntBASIC17.02■□□□□ 0.32
HIF3AQ9Y2N7 PTPRCAP-201ENST00000326294 1292 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
HIF3AQ9Y2N7 UHRF2-202ENST00000381373 802 ntTSL 3 BASIC17.02■□□□□ 0.32
HIF3AQ9Y2N7 RPS2P4-201ENST00000476944 856 ntBASIC17.02■□□□□ 0.32
HIF3AQ9Y2N7 FDX2-207ENST00000494368 584 ntTSL 4 BASIC17.02■□□□□ 0.32
HIF3AQ9Y2N7 RNF121-214ENST00000533380 870 ntTSL 3 BASIC17.02■□□□□ 0.32
HIF3AQ9Y2N7 AC026271.3-201ENST00000571884 352 ntBASIC17.02■□□□□ 0.32
HIF3AQ9Y2N7 MRPL4-204ENST00000588502 827 ntTSL 2 BASIC17.02■□□□□ 0.32
HIF3AQ9Y2N7 L34079.3-201ENST00000600242 546 ntTSL 4 BASIC17.02■□□□□ 0.32
HIF3AQ9Y2N7 FCMR-210ENST00000628511 1055 ntAPPRIS ALT2 TSL 1 (best) BASIC17.02■□□□□ 0.32
HIF3AQ9Y2N7 ADNP2-201ENST00000262198 5393 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
HIF3AQ9Y2N7 SPAG9-202ENST00000357122 4761 ntAPPRIS P2 TSL 1 (best) BASIC17.02■□□□□ 0.32
HIF3AQ9Y2N7 ARAP1-AS2-201ENST00000500163 1824 ntTSL 2 BASIC17.02■□□□□ 0.31
HIF3AQ9Y2N7 RPS6KA1-203ENST00000374166 3131 ntTSL 5 BASIC17.02■□□□□ 0.31
HIF3AQ9Y2N7 SNX4-201ENST00000251775 2513 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
HIF3AQ9Y2N7 RCC2P6-201ENST00000526625 1557 ntBASIC17.02■□□□□ 0.31
HIF3AQ9Y2N7 PLEKHA2-206ENST00000521746 2127 ntTSL 5 BASIC17.02■□□□□ 0.31
HIF3AQ9Y2N7 CHMP4A-201ENST00000347519 1393 ntTSL 1 (best) BASIC17.02■□□□□ 0.31
HIF3AQ9Y2N7 NTRK1-201ENST00000358660 2492 ntAPPRIS ALT2 TSL 2 BASIC17.02■□□□□ 0.31
HIF3AQ9Y2N7 TDRKH-203ENST00000368824 2824 ntAPPRIS P2 TSL 1 (best) BASIC17.02■□□□□ 0.31
HIF3AQ9Y2N7 GRAMD2B-219ENST00000544396 2822 ntTSL 2 BASIC17.02■□□□□ 0.31
HIF3AQ9Y2N7 RGS3-231ENST00000613049 1726 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
HIF3AQ9Y2N7 GPR135-201ENST00000395116 4578 ntAPPRIS P1 BASIC17.01■□□□□ 0.31
HIF3AQ9Y2N7 SUMF2-202ENST00000342190 1876 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
HIF3AQ9Y2N7 ARRB1-201ENST00000360025 1895 ntAPPRIS P3 TSL 1 (best) BASIC17.01■□□□□ 0.31
HIF3AQ9Y2N7 ANKRD13D-201ENST00000308440 2219 ntTSL 2 BASIC17.01■□□□□ 0.31
HIF3AQ9Y2N7 HOXD12-202ENST00000406506 1318 ntAPPRIS P1 TSL 3 BASIC17.01■□□□□ 0.31
HIF3AQ9Y2N7 GPRIN2-201ENST00000374314 1696 ntAPPRIS P1 BASIC17.01■□□□□ 0.31
HIF3AQ9Y2N7 HEIH-201ENST00000623091 1652 ntBASIC17.01■□□□□ 0.31
HIF3AQ9Y2N7 KLHL40-201ENST00000287777 2517 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
HIF3AQ9Y2N7 ADCY9-201ENST00000294016 7725 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
HIF3AQ9Y2N7 RPRM-201ENST00000325926 1471 ntAPPRIS P1 BASIC17.01■□□□□ 0.31
HIF3AQ9Y2N7 TMEM25-203ENST00000354284 1456 ntTSL 2 BASIC17.01■□□□□ 0.31
HIF3AQ9Y2N7 TMPRSS5-205ENST00000538955 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC17.01■□□□□ 0.31
HIF3AQ9Y2N7 BIK-201ENST00000216115 953 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
HIF3AQ9Y2N7 BABAM1-202ENST00000447614 930 ntAPPRIS ALT2 TSL 5 BASIC17.01■□□□□ 0.31
HIF3AQ9Y2N7 C5orf49-202ENST00000509627 1020 ntAPPRIS ALT2 TSL 1 (best) BASIC17.01■□□□□ 0.31
HIF3AQ9Y2N7 RPPH1-201ENST00000516869 333 ntBASIC17.01■□□□□ 0.31
HIF3AQ9Y2N7 COPS7A-215ENST00000543155 2127 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
HIF3AQ9Y2N7 JADE2-211ENST00000612830 1251 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
HIF3AQ9Y2N7 SLC35A2-213ENST00000635015 1008 ntTSL 2 BASIC17.01■□□□□ 0.31
HIF3AQ9Y2N7 ABBA01031674.1-201ENST00000635145 728 ntBASIC17.01■□□□□ 0.31
HIF3AQ9Y2N7 CHPF-203ENST00000535926 2634 ntTSL 2 BASIC17.01■□□□□ 0.31
HIF3AQ9Y2N7 AC104581.1-202ENST00000635932 2618 ntBASIC17.01■□□□□ 0.31
HIF3AQ9Y2N7 PRR5-201ENST00000006251 1767 ntTSL 2 BASIC17.01■□□□□ 0.31
HIF3AQ9Y2N7 GLDN-201ENST00000335449 4971 ntAPPRIS P1 TSL 2 BASIC17.01■□□□□ 0.31
HIF3AQ9Y2N7 PDLIM4-201ENST00000253754 2282 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
HIF3AQ9Y2N7 ALDH5A1-201ENST00000348925 2266 ntAPPRIS P4 TSL 1 (best) BASIC17.01■□□□□ 0.31
HIF3AQ9Y2N7 MAN1B1-207ENST00000535144 2296 ntTSL 2 BASIC17.01■□□□□ 0.31
HIF3AQ9Y2N7 KRT16P1-201ENST00000399124 1418 ntBASIC17.01■□□□□ 0.31
HIF3AQ9Y2N7 ZNF692-204ENST00000451251 2065 ntAPPRIS ALT2 TSL 2 BASIC17.01■□□□□ 0.31
HIF3AQ9Y2N7 LRRC36-201ENST00000329956 2395 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
HIF3AQ9Y2N7 ASIC3-202ENST00000349064 1895 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
HIF3AQ9Y2N7 P2RX2-206ENST00000389110 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC17.01■□□□□ 0.31
HIF3AQ9Y2N7 HEBP2-204ENST00000607197 10014 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
HIF3AQ9Y2N7 FAM90A1-201ENST00000307435 2342 ntAPPRIS P1 TSL 2 BASIC17.01■□□□□ 0.31
HIF3AQ9Y2N7 GTF2H4-202ENST00000376316 1673 ntAPPRIS P1 TSL 5 BASIC17.01■□□□□ 0.31
HIF3AQ9Y2N7 HOXB8-201ENST00000239144 1823 ntAPPRIS P2 TSL 2 BASIC17■□□□□ 0.31
HIF3AQ9Y2N7 EIF5-201ENST00000216554 5945 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Retrieved 100 of 98,524 protein–RNA pairs in 50.9 ms