Protein–RNA interactions for Protein: Q9UIU6

SIX4, Homeobox protein SIX4, humanhuman

Predictions only

Length 781 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX4Q9UIU6 DPF1-203ENST00000414789 1960 ntTSL 2 BASIC20.17■□□□□ 0.82
SIX4Q9UIU6 ZNF316-201ENST00000382252 5392 ntAPPRIS P1 TSL 5 BASIC20.17■□□□□ 0.82
SIX4Q9UIU6 TBC1D10C-201ENST00000312390 1497 ntTSL 5 BASIC20.17■□□□□ 0.82
SIX4Q9UIU6 BHLHE22-201ENST00000321870 3262 ntAPPRIS P1 BASIC20.17■□□□□ 0.82
SIX4Q9UIU6 CCDC106-201ENST00000308964 1546 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
SIX4Q9UIU6 FBRS-202ENST00000356166 5200 ntTSL 5 BASIC20.17■□□□□ 0.82
SIX4Q9UIU6 PGAP3-206ENST00000579146 2220 ntTSL 2 BASIC20.17■□□□□ 0.82
SIX4Q9UIU6 SETMAR-206ENST00000430981 1671 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
SIX4Q9UIU6 C5orf47-201ENST00000340147 2522 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
SIX4Q9UIU6 ZNF652-202ENST00000430262 4701 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
SIX4Q9UIU6 GDPD1-201ENST00000284116 1821 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
SIX4Q9UIU6 SP9-201ENST00000394967 2554 ntAPPRIS P1 TSL 5 BASIC20.16■□□□□ 0.82
SIX4Q9UIU6 CTNNBL1-201ENST00000361383 1925 ntAPPRIS P2 TSL 1 (best) BASIC20.16■□□□□ 0.82
SIX4Q9UIU6 CTBP2-214ENST00000531469 1918 ntAPPRIS P1 TSL 2 BASIC20.16■□□□□ 0.82
SIX4Q9UIU6 UNG-202ENST00000336865 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
SIX4Q9UIU6 AIPL1-209ENST00000575265 2111 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
SIX4Q9UIU6 AC027796.4-201ENST00000575741 874 ntTSL 5 BASIC20.16■□□□□ 0.82
SIX4Q9UIU6 CENPX-206ENST00000580435 710 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
SIX4Q9UIU6 NUDT16L1-203ENST00000586252 922 ntTSL 3 BASIC20.16■□□□□ 0.82
SIX4Q9UIU6 AC139887.4-201ENST00000607877 719 ntBASIC20.16■□□□□ 0.82
SIX4Q9UIU6 RNF40-201ENST00000324685 5634 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
SIX4Q9UIU6 CYSTM1-201ENST00000261811 1336 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
SIX4Q9UIU6 NFATC4-220ENST00000555393 2235 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
SIX4Q9UIU6 KCNC3-203ENST00000477616 3176 ntAPPRIS P2 TSL 1 (best) BASIC20.16■□□□□ 0.82
SIX4Q9UIU6 EPHX4-201ENST00000370383 1437 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
SIX4Q9UIU6 CD164L2-202ENST00000374027 1457 ntAPPRIS P3 TSL 1 (best) BASIC20.16■□□□□ 0.82
SIX4Q9UIU6 MFSD1-201ENST00000264266 1594 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
SIX4Q9UIU6 C7orf49-202ENST00000424142 1738 ntTSL 2 BASIC20.16■□□□□ 0.82
SIX4Q9UIU6 PTPRK-218ENST00000525459 1722 ntTSL 2 BASIC20.16■□□□□ 0.82
SIX4Q9UIU6 MAF-202ENST00000393350 6384 ntAPPRIS ALT2 BASIC20.16■□□□□ 0.82
SIX4Q9UIU6 MORC4-201ENST00000255495 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
SIX4Q9UIU6 UTP18-201ENST00000225298 1894 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
SIX4Q9UIU6 TSGA10IP-203ENST00000532620 1925 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
SIX4Q9UIU6 RGMB-207ENST00000513185 2052 ntAPPRIS ALT2 TSL 2 BASIC20.15■□□□□ 0.82
SIX4Q9UIU6 MOXD1-203ENST00000392401 2191 ntTSL 4 BASIC20.15■□□□□ 0.82
SIX4Q9UIU6 YAP1-202ENST00000345877 5284 ntTSL 5 BASIC20.15■□□□□ 0.82
SIX4Q9UIU6 AP000974.1-201ENST00000623909 2387 ntBASIC20.15■□□□□ 0.82
SIX4Q9UIU6 PCCA-201ENST00000376279 2418 ntTSL 2 BASIC20.15■□□□□ 0.82
SIX4Q9UIU6 RHOT2-201ENST00000315082 2539 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
SIX4Q9UIU6 ISLR2-208ENST00000565159 2824 ntAPPRIS P1 TSL 3 BASIC20.15■□□□□ 0.82
SIX4Q9UIU6 OCIAD2-201ENST00000273860 636 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
SIX4Q9UIU6 NME1-202ENST00000336097 986 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
SIX4Q9UIU6 PHOSPHO2-201ENST00000359744 1125 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
SIX4Q9UIU6 NME1-203ENST00000393196 940 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
SIX4Q9UIU6 AL035541.1-201ENST00000424850 823 ntTSL 2 BASIC20.15■□□□□ 0.82
SIX4Q9UIU6 CMTM3-210ENST00000565666 769 ntTSL 3 BASIC20.15■□□□□ 0.82
SIX4Q9UIU6 AC010531.1-201ENST00000568879 953 ntAPPRIS P1 TSL 4 BASIC20.15■□□□□ 0.82
SIX4Q9UIU6 OBP2B-205ENST00000618116 961 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
SIX4Q9UIU6 OCIAD2-210ENST00000620187 697 ntTSL 3 BASIC20.15■□□□□ 0.82
SIX4Q9UIU6 CIRBP-201ENST00000320936 1328 ntAPPRIS P3 TSL 1 (best) BASIC20.15■□□□□ 0.82
SIX4Q9UIU6 HAGHL-203ENST00000389703 1347 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
SIX4Q9UIU6 CIRBP-207ENST00000586472 1303 ntAPPRIS P3 TSL 3 BASIC20.15■□□□□ 0.82
SIX4Q9UIU6 AC140125.2-201ENST00000502515 1517 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
SIX4Q9UIU6 DOC2A-209ENST00000564979 1630 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
SIX4Q9UIU6 NCKAP1-201ENST00000360982 4989 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
SIX4Q9UIU6 INPP5J-203ENST00000401755 1751 ntTSL 2 BASIC20.15■□□□□ 0.82
SIX4Q9UIU6 DIO3OS-212ENST00000557661 1937 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
SIX4Q9UIU6 NAT16-201ENST00000300303 2935 ntAPPRIS P2 TSL 2 BASIC20.15■□□□□ 0.82
SIX4Q9UIU6 LRRC4B-202ENST00000599957 3019 ntAPPRIS P1 TSL 3 BASIC20.15■□□□□ 0.82
SIX4Q9UIU6 PPP4R2-201ENST00000356692 4984 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
SIX4Q9UIU6 ITPKB-202ENST00000366784 3146 ntTSL 1 (best) BASIC20.14■□□□□ 0.82
SIX4Q9UIU6 DDX59-201ENST00000331314 2289 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
SIX4Q9UIU6 TCTN1-223ENST00000550703 2149 ntTSL 2 BASIC20.14■□□□□ 0.81
SIX4Q9UIU6 EXOSC3-201ENST00000327304 1806 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
SIX4Q9UIU6 SLC31A2-201ENST00000259392 1785 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
SIX4Q9UIU6 AC012615.6-201ENST00000593201 1697 ntTSL 2 BASIC20.14■□□□□ 0.81
SIX4Q9UIU6 NR1H2-202ENST00000411902 1466 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
SIX4Q9UIU6 LCE3C-201ENST00000333881 425 ntAPPRIS P1 BASIC20.14■□□□□ 0.81
SIX4Q9UIU6 FGF8-202ENST00000344255 707 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
SIX4Q9UIU6 MIR564-202ENST00000385049 94 ntBASIC20.14■□□□□ 0.81
SIX4Q9UIU6 LINC01534-202ENST00000433232 554 ntTSL 3 BASIC20.14■□□□□ 0.81
SIX4Q9UIU6 CDKN2AIPNL-202ENST00000458198 1223 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
SIX4Q9UIU6 NDUFV2-207ENST00000497577 868 ntTSL 2 BASIC20.14■□□□□ 0.81
SIX4Q9UIU6 LINC01385-201ENST00000512310 780 ntTSL 4 BASIC20.14■□□□□ 0.81
SIX4Q9UIU6 BCL2L12-208ENST00000600947 633 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
SIX4Q9UIU6 AL023973.1-201ENST00000624619 620 ntBASIC20.14■□□□□ 0.81
SIX4Q9UIU6 AC109460.3-201ENST00000569969 5296 ntTSL 2 BASIC20.14■□□□□ 0.81
SIX4Q9UIU6 SMPD1-203ENST00000527275 2188 ntAPPRIS P3 TSL 2 BASIC20.14■□□□□ 0.81
SIX4Q9UIU6 CPZ-201ENST00000315782 2136 ntAPPRIS P3 TSL 1 (best) BASIC20.14■□□□□ 0.81
SIX4Q9UIU6 CCDC34-202ENST00000328697 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC20.14■□□□□ 0.81
SIX4Q9UIU6 ST3GAL5-222ENST00000638572 4431 ntAPPRIS P2 TSL 1 (best) BASIC20.13■□□□□ 0.81
SIX4Q9UIU6 AL357033.4-201ENST00000617703 1807 ntBASIC20.13■□□□□ 0.81
SIX4Q9UIU6 ZNF655-202ENST00000320583 1601 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
SIX4Q9UIU6 MAP4K4-210ENST00000425019 4403 ntTSL 5 BASIC20.13■□□□□ 0.81
SIX4Q9UIU6 FBXW9-203ENST00000587955 1437 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
SIX4Q9UIU6 TMEM160-201ENST00000253047 663 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
SIX4Q9UIU6 BUD23-201ENST00000265758 1230 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
SIX4Q9UIU6 FUOM-201ENST00000278025 709 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
SIX4Q9UIU6 GLRX2-201ENST00000367439 701 ntAPPRIS ALT2 TSL 1 (best) BASIC20.13■□□□□ 0.81
SIX4Q9UIU6 AC099329.3-201ENST00000431549 602 ntAPPRIS P1 TSL 4 BASIC20.13■□□□□ 0.81
SIX4Q9UIU6 EHMT1-211ENST00000482340 691 ntTSL 5 BASIC20.13■□□□□ 0.81
SIX4Q9UIU6 COX11P1-201ENST00000489116 835 ntBASIC20.13■□□□□ 0.81
SIX4Q9UIU6 YBX1P2-201ENST00000489612 999 ntBASIC20.13■□□□□ 0.81
SIX4Q9UIU6 NEK4P2-201ENST00000580004 1012 ntBASIC20.13■□□□□ 0.81
SIX4Q9UIU6 KLK7-206ENST00000597707 1054 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
SIX4Q9UIU6 AC011558.1-201ENST00000623459 338 ntBASIC20.13■□□□□ 0.81
SIX4Q9UIU6 NFKBIZ-201ENST00000326151 2058 ntTSL 2 BASIC20.13■□□□□ 0.81
SIX4Q9UIU6 LRIG1-201ENST00000273261 5273 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
SIX4Q9UIU6 SCARB1-201ENST00000261693 2611 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
SIX4Q9UIU6 PLA2G7-201ENST00000274793 1882 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Retrieved 100 of 98,524 protein–RNA pairs in 23.3 ms