Protein–RNA interactions for Protein: Q9UBD9

CLCF1, Cardiotrophin-like cytokine factor 1, humanhuman

Predictions only

Length 225 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLCF1Q9UBD9 SPRYD7-204ENST00000613924 2285 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
CLCF1Q9UBD9 NAT8L-201ENST00000331662 5571 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
CLCF1Q9UBD9 SYT8-202ENST00000381968 1424 ntAPPRIS P2 TSL 5 BASIC16.77■□□□□ 0.27
CLCF1Q9UBD9 CASKIN2-205ENST00000581870 1612 ntTSL 2 BASIC16.77■□□□□ 0.27
CLCF1Q9UBD9 KLRG2-201ENST00000340940 2197 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
CLCF1Q9UBD9 SLC3A2-202ENST00000377889 1993 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
CLCF1Q9UBD9 FP475955.4-201ENST00000623131 1990 ntBASIC16.77■□□□□ 0.27
CLCF1Q9UBD9 SNX19-209ENST00000530356 1562 ntTSL 2 BASIC16.77■□□□□ 0.27
CLCF1Q9UBD9 ZDHHC20-201ENST00000320220 1351 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
CLCF1Q9UBD9 ADAP1-217ENST00000611167 2118 ntTSL 5 BASIC16.76■□□□□ 0.27
CLCF1Q9UBD9 AMDHD1-201ENST00000266736 2260 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
CLCF1Q9UBD9 CYB561-205ENST00000542042 1302 ntTSL 2 BASIC16.76■□□□□ 0.27
CLCF1Q9UBD9 AC005906.2-203ENST00000640962 2091 ntTSL 5 BASIC16.76■□□□□ 0.27
CLCF1Q9UBD9 RUNX3-202ENST00000338888 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
CLCF1Q9UBD9 PPFIA1-201ENST00000253925 5234 ntAPPRIS P4 TSL 1 (best) BASIC16.76■□□□□ 0.27
CLCF1Q9UBD9 PLEKHG2-202ENST00000409797 2205 ntAPPRIS ALT2 TSL 2 BASIC16.76■□□□□ 0.27
CLCF1Q9UBD9 CD164L2-202ENST00000374027 1457 ntAPPRIS P3 TSL 1 (best) BASIC16.76■□□□□ 0.27
CLCF1Q9UBD9 RASSF7-205ENST00000454668 1450 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
CLCF1Q9UBD9 KCTD12-201ENST00000377474 6225 ntAPPRIS P1 BASIC16.76■□□□□ 0.27
CLCF1Q9UBD9 PBXIP1-201ENST00000368460 1175 ntAPPRIS ALT2 TSL 3 BASIC16.76■□□□□ 0.27
CLCF1Q9UBD9 GAD2-202ENST00000376248 680 ntTSL 5 BASIC16.76■□□□□ 0.27
CLCF1Q9UBD9 ISCU-202ENST00000392807 1069 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
CLCF1Q9UBD9 EEF1D-202ENST00000395119 1249 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
CLCF1Q9UBD9 ISCU-203ENST00000431221 799 ntTSL 2 BASIC16.76■□□□□ 0.27
CLCF1Q9UBD9 ST6GALNAC4P1-201ENST00000435385 499 ntBASIC16.76■□□□□ 0.27
CLCF1Q9UBD9 RBPMS-AS1-202ENST00000519753 1031 ntTSL 5 BASIC16.76■□□□□ 0.27
CLCF1Q9UBD9 DRAP1-205ENST00000527119 581 ntTSL 5 BASIC16.76■□□□□ 0.27
CLCF1Q9UBD9 GOLGA2P7-203ENST00000557881 896 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
CLCF1Q9UBD9 ELAVL1-202ENST00000593807 856 ntTSL 3 BASIC16.76■□□□□ 0.27
CLCF1Q9UBD9 mascRNA-menRNA.2-201ENST00000616984 58 ntBASIC16.76■□□□□ 0.27
CLCF1Q9UBD9 GOLGA2P10-205ENST00000618267 983 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
CLCF1Q9UBD9 AL512353.2-201ENST00000448759 1962 ntBASIC16.76■□□□□ 0.27
CLCF1Q9UBD9 NR2F1-205ENST00000615873 1427 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
CLCF1Q9UBD9 SMIM4-203ENST00000477703 1770 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
CLCF1Q9UBD9 LTBP1-203ENST00000404816 6333 ntAPPRIS P4 TSL 5 BASIC16.76■□□□□ 0.27
CLCF1Q9UBD9 SLMAP-201ENST00000295951 5433 ntAPPRIS P1 TSL 5 BASIC16.76■□□□□ 0.27
CLCF1Q9UBD9 CDH5-204ENST00000563425 1932 ntTSL 5 BASIC16.76■□□□□ 0.27
CLCF1Q9UBD9 ABO-203ENST00000611156 1577 ntAPPRIS ALT2 TSL 5 BASIC16.76■□□□□ 0.27
CLCF1Q9UBD9 ACD-201ENST00000219251 2052 ntAPPRIS P3 TSL 2 BASIC16.76■□□□□ 0.27
CLCF1Q9UBD9 VWA8-AS1-201ENST00000611103 2079 ntTSL 2 BASIC16.76■□□□□ 0.27
CLCF1Q9UBD9 AC140125.2-201ENST00000502515 1517 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
CLCF1Q9UBD9 SSBP3-216ENST00000610401 3168 ntTSL 5 BASIC16.75■□□□□ 0.27
CLCF1Q9UBD9 RAC1-201ENST00000348035 2323 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
CLCF1Q9UBD9 MAGED2-213ENST00000627068 1811 ntAPPRIS ALT2 TSL 5 BASIC16.75■□□□□ 0.27
CLCF1Q9UBD9 CFAP100-203ENST00000505024 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC16.75■□□□□ 0.27
CLCF1Q9UBD9 SIX5-203ENST00000560168 1975 ntTSL 4 BASIC16.75■□□□□ 0.27
CLCF1Q9UBD9 SPAG4-201ENST00000374273 1453 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
CLCF1Q9UBD9 ICA1-208ENST00000407906 1615 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
CLCF1Q9UBD9 RELB-207ENST00000625761 2279 ntAPPRIS ALT2 TSL 5 BASIC16.75■□□□□ 0.27
CLCF1Q9UBD9 IQCJ-SCHIP1-204ENST00000485419 2445 ntAPPRIS ALT2 TSL 2 BASIC16.75■□□□□ 0.27
CLCF1Q9UBD9 C1orf198-201ENST00000366663 3858 ntAPPRIS P3 TSL 1 (best) BASIC16.75■□□□□ 0.27
CLCF1Q9UBD9 CEP85L-205ENST00000419517 2079 ntAPPRIS P3 TSL 1 (best) BASIC16.75■□□□□ 0.27
CLCF1Q9UBD9 FUOM-201ENST00000278025 709 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
CLCF1Q9UBD9 AGTRAP-201ENST00000314340 1107 ntAPPRIS P3 TSL 1 (best) BASIC16.75■□□□□ 0.27
CLCF1Q9UBD9 CDHR4-201ENST00000343366 1188 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
CLCF1Q9UBD9 C7orf50-203ENST00000397100 1264 ntAPPRIS P2 TSL 3 BASIC16.75■□□□□ 0.27
CLCF1Q9UBD9 STARP1-201ENST00000397973 869 ntBASIC16.75■□□□□ 0.27
CLCF1Q9UBD9 MALL-203ENST00000427178 1070 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
CLCF1Q9UBD9 SNX5-210ENST00000481323 562 ntTSL 3 BASIC16.75■□□□□ 0.27
CLCF1Q9UBD9 CD81-212ENST00000526072 1172 ntTSL 5 BASIC16.75■□□□□ 0.27
CLCF1Q9UBD9 GRP-204ENST00000529320 824 ntAPPRIS ALT2 TSL 1 (best) BASIC16.75■□□□□ 0.27
CLCF1Q9UBD9 CLN6-204ENST00000564752 900 ntTSL 3 BASIC16.75■□□□□ 0.27
CLCF1Q9UBD9 DUX4-205ENST00000570263 768 ntAPPRIS ALT2 TSL 1 (best) BASIC16.75■□□□□ 0.27
CLCF1Q9UBD9 RABAC1-210ENST00000601891 628 ntTSL 3 BASIC16.75■□□□□ 0.27
CLCF1Q9UBD9 RAB29-205ENST00000446390 1441 ntTSL 2 BASIC16.75■□□□□ 0.27
CLCF1Q9UBD9 FBXW9-203ENST00000587955 1437 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
CLCF1Q9UBD9 PMS1-222ENST00000639501 2506 ntTSL 5 BASIC16.75■□□□□ 0.27
CLCF1Q9UBD9 TMEM74-201ENST00000297459 1741 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
CLCF1Q9UBD9 PLEKHH3-201ENST00000293349 2987 ntAPPRIS ALT1 TSL 5 BASIC16.75■□□□□ 0.27
CLCF1Q9UBD9 SH2B3-201ENST00000341259 5406 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
CLCF1Q9UBD9 RBM15B-201ENST00000563281 6641 ntAPPRIS P1 BASIC16.75■□□□□ 0.27
CLCF1Q9UBD9 ACTL6B-201ENST00000160382 1537 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
CLCF1Q9UBD9 RCC2P3-201ENST00000418112 1537 ntBASIC16.75■□□□□ 0.27
CLCF1Q9UBD9 AC093627.4-201ENST00000484550 5008 ntTSL 2 BASIC16.75■□□□□ 0.27
CLCF1Q9UBD9 MYEOV-202ENST00000441339 1996 ntAPPRIS P3 TSL 2 BASIC16.75■□□□□ 0.27
CLCF1Q9UBD9 ATOH8-201ENST00000306279 2438 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
CLCF1Q9UBD9 SMIM10L2B-201ENST00000433425 2737 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
CLCF1Q9UBD9 HNRNPLL-203ENST00000378915 2523 ntTSL 5 BASIC16.74■□□□□ 0.27
CLCF1Q9UBD9 MBD1-216ENST00000587605 1945 ntTSL 2 BASIC16.74■□□□□ 0.27
CLCF1Q9UBD9 PDE9A-213ENST00000398236 1776 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
CLCF1Q9UBD9 PFN2-203ENST00000452853 1780 ntAPPRIS ALT1 TSL 1 (best) BASIC16.74■□□□□ 0.27
CLCF1Q9UBD9 NUDT16L1-201ENST00000304301 1349 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
CLCF1Q9UBD9 LY6E-203ENST00000517503 1335 ntAPPRIS ALT2 TSL 3 BASIC16.74■□□□□ 0.27
CLCF1Q9UBD9 PPP4C-202ENST00000561610 1333 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
CLCF1Q9UBD9 TINAGL1-201ENST00000271064 2187 ntAPPRIS P3 TSL 1 (best) BASIC16.74■□□□□ 0.27
CLCF1Q9UBD9 AC093484.2-201ENST00000580996 2166 ntBASIC16.74■□□□□ 0.27
CLCF1Q9UBD9 AL032819.2-201ENST00000624543 2162 ntBASIC16.74■□□□□ 0.27
CLCF1Q9UBD9 ARHGAP8-202ENST00000356099 1584 ntAPPRIS P3 TSL 1 (best) BASIC16.74■□□□□ 0.27
CLCF1Q9UBD9 TEX22-201ENST00000451127 2571 ntAPPRIS P1 TSL 2 BASIC16.74■□□□□ 0.27
CLCF1Q9UBD9 KHDC1-202ENST00000370384 1430 ntAPPRIS ALT2 TSL 1 (best) BASIC16.74■□□□□ 0.27
CLCF1Q9UBD9 SLC34A3-201ENST00000361134 2124 ntAPPRIS P1 TSL 2 BASIC16.74■□□□□ 0.27
CLCF1Q9UBD9 DDRGK1-202ENST00000380201 1128 ntTSL 2 BASIC16.74■□□□□ 0.27
CLCF1Q9UBD9 GGT1-205ENST00000403838 1033 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
CLCF1Q9UBD9 AL671277.2-201ENST00000458060 996 ntBASIC16.74■□□□□ 0.27
CLCF1Q9UBD9 AF250324.1-201ENST00000506276 703 ntTSL 3 BASIC16.74■□□□□ 0.27
CLCF1Q9UBD9 CNTD2-203ENST00000513948 787 ntAPPRIS ALT2 TSL 2 BASIC16.74■□□□□ 0.27
CLCF1Q9UBD9 AP006284.1-202ENST00000527113 527 ntTSL 4 BASIC16.74■□□□□ 0.27
CLCF1Q9UBD9 AC021739.3-201ENST00000557908 855 ntTSL 2 BASIC16.74■□□□□ 0.27
CLCF1Q9UBD9 ALDOA-212ENST00000564546 2104 ntAPPRIS P2 TSL 1 (best) BASIC16.74■□□□□ 0.27
CLCF1Q9UBD9 AC239803.1-201ENST00000594189 1278 ntTSL 5 BASIC16.74■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 23.3 ms