Protein–RNA interactions for Protein: Q9NZR4

VSX1, Visual system homeobox 1, humanhuman

Predicted RBP Predictions only

Length 365 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VSX1Q9NZR4 CENPA-201ENST00000233505 1299 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
VSX1Q9NZR4 RALGPS1-206ENST00000394011 819 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
VSX1Q9NZR4 AC007405.3-201ENST00000429172 561 ntTSL 3 BASIC16.85■□□□□ 0.29
VSX1Q9NZR4 NDUFAF3-204ENST00000451378 774 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
VSX1Q9NZR4 C1QBPP2-201ENST00000528754 825 ntBASIC16.85■□□□□ 0.29
VSX1Q9NZR4 AC020922.2-201ENST00000596786 359 ntTSL 4 BASIC16.85■□□□□ 0.29
VSX1Q9NZR4 GTF3A-201ENST00000381140 1383 ntAPPRIS ALT2 TSL 1 (best) BASIC16.85■□□□□ 0.29
VSX1Q9NZR4 SH3BP2-202ENST00000435136 2318 ntAPPRIS P3 TSL 2 BASIC16.85■□□□□ 0.29
VSX1Q9NZR4 CITED2-201ENST00000367651 2354 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
VSX1Q9NZR4 SHISA5-220ENST00000619810 2385 ntTSL 2 BASIC16.85■□□□□ 0.29
VSX1Q9NZR4 CNOT9-209ENST00000627282 1621 ntTSL 2 BASIC16.85■□□□□ 0.29
VSX1Q9NZR4 PLIN5-201ENST00000381848 2470 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
VSX1Q9NZR4 FAM131A-204ENST00000418281 1664 ntTSL 5 BASIC16.85■□□□□ 0.29
VSX1Q9NZR4 PCGF3-208ENST00000470161 1652 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
VSX1Q9NZR4 EIF5-201ENST00000216554 5945 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
VSX1Q9NZR4 PRRT1-202ENST00000375150 1726 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
VSX1Q9NZR4 CYP2D7-203ENST00000433992 1740 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
VSX1Q9NZR4 CYP2D7-207ENST00000612115 1734 ntAPPRIS P1 TSL 5 BASIC16.84■□□□□ 0.29
VSX1Q9NZR4 CERS4-201ENST00000251363 1797 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
VSX1Q9NZR4 MFSD10-202ENST00000355443 1753 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
VSX1Q9NZR4 NPEPL1-203ENST00000525817 1780 ntTSL 2 BASIC16.84■□□□□ 0.29
VSX1Q9NZR4 MYBL2-202ENST00000396863 2704 ntTSL 2 BASIC16.84■□□□□ 0.29
VSX1Q9NZR4 PSTPIP1-203ENST00000558012 1896 ntAPPRIS P2 TSL 1 (best) BASIC16.84■□□□□ 0.29
VSX1Q9NZR4 TMEM250-201ENST00000418388 2823 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
VSX1Q9NZR4 ZBTB8A-201ENST00000316459 1943 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
VSX1Q9NZR4 NUMBL-202ENST00000540131 1931 ntAPPRIS ALT2 TSL 2 BASIC16.84■□□□□ 0.29
VSX1Q9NZR4 GBGT1-208ENST00000540636 1934 ntTSL 2 BASIC16.84■□□□□ 0.29
VSX1Q9NZR4 AD000671.2-201ENST00000589807 1925 ntAPPRIS P1 TSL 2 BASIC16.84■□□□□ 0.29
VSX1Q9NZR4 COBL-210ENST00000632460 1941 ntTSL 5 BASIC16.84■□□□□ 0.29
VSX1Q9NZR4 ACADS-201ENST00000242592 1950 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
VSX1Q9NZR4 FOXI1-201ENST00000306268 1990 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
VSX1Q9NZR4 PDE6B-202ENST00000429163 2120 ntTSL 2 BASIC16.84■□□□□ 0.29
VSX1Q9NZR4 ENTPD8-202ENST00000371506 2222 ntAPPRIS P1 TSL 5 BASIC16.84■□□□□ 0.29
VSX1Q9NZR4 ACOT8-201ENST00000217455 1168 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
VSX1Q9NZR4 COX7A1-201ENST00000292907 762 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
VSX1Q9NZR4 SIVA1-201ENST00000329967 802 ntAPPRIS P2 TSL 1 (best) BASIC16.84■□□□□ 0.29
VSX1Q9NZR4 DERL1-203ENST00000419562 918 ntTSL 2 BASIC16.84■□□□□ 0.29
VSX1Q9NZR4 STK24-AS1-201ENST00000434547 1278 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
VSX1Q9NZR4 RPS2P4-201ENST00000476944 856 ntBASIC16.84■□□□□ 0.29
VSX1Q9NZR4 AC073111.3-201ENST00000478789 635 ntAPPRIS P1 TSL 3 BASIC16.84■□□□□ 0.29
VSX1Q9NZR4 FDX2-207ENST00000494368 584 ntTSL 4 BASIC16.84■□□□□ 0.29
VSX1Q9NZR4 RNF121-214ENST00000533380 870 ntTSL 3 BASIC16.84■□□□□ 0.29
VSX1Q9NZR4 MRPL4-204ENST00000588502 827 ntTSL 2 BASIC16.84■□□□□ 0.29
VSX1Q9NZR4 L34079.3-201ENST00000600242 546 ntTSL 4 BASIC16.84■□□□□ 0.29
VSX1Q9NZR4 MMD2-204ENST00000612910 778 ntTSL 5 BASIC16.84■□□□□ 0.29
VSX1Q9NZR4 AC103746.1-201ENST00000617440 1133 ntTSL 3 BASIC16.84■□□□□ 0.29
VSX1Q9NZR4 FCMR-210ENST00000628511 1055 ntAPPRIS ALT2 TSL 1 (best) BASIC16.84■□□□□ 0.29
VSX1Q9NZR4 GPC5-201ENST00000377067 2957 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
VSX1Q9NZR4 FADS1-204ENST00000433932 1690 ntTSL 2 BASIC16.84■□□□□ 0.29
VSX1Q9NZR4 SNAP47-201ENST00000315781 2367 ntAPPRIS P3 TSL 1 (best) BASIC16.84■□□□□ 0.29
VSX1Q9NZR4 UVSSA-207ENST00000511216 2927 ntAPPRIS P2 TSL 1 (best) BASIC16.83■□□□□ 0.29
VSX1Q9NZR4 ZNF470-201ENST00000330619 7151 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.29
VSX1Q9NZR4 IGFBP4-201ENST00000269593 2200 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
VSX1Q9NZR4 CMTM8-201ENST00000307526 1174 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
VSX1Q9NZR4 MYEOV-201ENST00000308946 2287 ntAPPRIS P3 TSL 1 (best) BASIC16.83■□□□□ 0.28
VSX1Q9NZR4 RPRM-201ENST00000325926 1471 ntAPPRIS P1 BASIC16.83■□□□□ 0.28
VSX1Q9NZR4 PTPRCAP-201ENST00000326294 1292 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
VSX1Q9NZR4 CHMP4A-201ENST00000347519 1393 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
VSX1Q9NZR4 TMEM25-203ENST00000354284 1456 ntTSL 2 BASIC16.83■□□□□ 0.28
VSX1Q9NZR4 ARHGAP22-203ENST00000374172 2380 ntTSL 2 BASIC16.83■□□□□ 0.28
VSX1Q9NZR4 UHRF2-202ENST00000381373 802 ntTSL 3 BASIC16.83■□□□□ 0.28
VSX1Q9NZR4 HOXD12-202ENST00000406506 1318 ntAPPRIS P1 TSL 3 BASIC16.83■□□□□ 0.28
VSX1Q9NZR4 C5orf49-202ENST00000509627 1020 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.28
VSX1Q9NZR4 RPPH1-201ENST00000516869 333 ntBASIC16.83■□□□□ 0.28
VSX1Q9NZR4 RCC2P6-201ENST00000526625 1557 ntBASIC16.83■□□□□ 0.28
VSX1Q9NZR4 KATNBL1P6-202ENST00000562413 1466 ntBASIC16.83■□□□□ 0.28
VSX1Q9NZR4 AC026271.3-201ENST00000571884 352 ntBASIC16.83■□□□□ 0.28
VSX1Q9NZR4 CDK11B-207ENST00000626918 2457 ntTSL 5 BASIC16.83■□□□□ 0.28
VSX1Q9NZR4 CDK11B-208ENST00000629289 2490 ntTSL 5 BASIC16.83■□□□□ 0.28
VSX1Q9NZR4 CDK11B-209ENST00000629312 2496 ntTSL 5 BASIC16.83■□□□□ 0.28
VSX1Q9NZR4 SLC35A2-213ENST00000635015 1008 ntTSL 2 BASIC16.83■□□□□ 0.28
VSX1Q9NZR4 ABBA01031674.1-201ENST00000635145 728 ntBASIC16.83■□□□□ 0.28
VSX1Q9NZR4 MIB2-231ENST00000518681 3116 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
VSX1Q9NZR4 PHF20L1-209ENST00000395386 6237 ntAPPRIS P1 TSL 5 BASIC16.83■□□□□ 0.28
VSX1Q9NZR4 GRB10-205ENST00000401949 2627 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
VSX1Q9NZR4 GAS2L1-210ENST00000621062 2483 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
VSX1Q9NZR4 MSLN-207ENST00000566549 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
VSX1Q9NZR4 ANKRD13D-201ENST00000308440 2219 ntTSL 2 BASIC16.82■□□□□ 0.28
VSX1Q9NZR4 AC090164.3-201ENST00000610780 2143 ntBASIC16.82■□□□□ 0.28
VSX1Q9NZR4 EVPL-202ENST00000586740 6223 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
VSX1Q9NZR4 SUMF2-202ENST00000342190 1876 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
VSX1Q9NZR4 TH-205ENST00000381175 1898 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
VSX1Q9NZR4 FNBP1-202ENST00000420781 5410 ntAPPRIS ALT1 TSL 1 (best) BASIC16.82■□□□□ 0.28
VSX1Q9NZR4 PRR5-201ENST00000006251 1767 ntTSL 2 BASIC16.82■□□□□ 0.28
VSX1Q9NZR4 RGS3-231ENST00000613049 1726 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
VSX1Q9NZR4 CACNA1A-247ENST00000637769 8648 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
VSX1Q9NZR4 HEIH-201ENST00000623091 1652 ntBASIC16.82■□□□□ 0.28
VSX1Q9NZR4 GAL3ST1-206ENST00000406955 1635 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
VSX1Q9NZR4 TAL1-202ENST00000371884 4642 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
VSX1Q9NZR4 BPIFB3-201ENST00000375494 1454 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
VSX1Q9NZR4 KRT16P1-201ENST00000399124 1418 ntBASIC16.82■□□□□ 0.28
VSX1Q9NZR4 BIK-201ENST00000216115 953 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
VSX1Q9NZR4 CLDND2-201ENST00000291715 974 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
VSX1Q9NZR4 BABAM1-202ENST00000447614 930 ntAPPRIS ALT2 TSL 5 BASIC16.82■□□□□ 0.28
VSX1Q9NZR4 AC091390.4-202ENST00000476426 537 ntBASIC16.82■□□□□ 0.28
VSX1Q9NZR4 HGNC:18790-208ENST00000506380 798 ntAPPRIS P1 TSL 3 BASIC16.82■□□□□ 0.28
VSX1Q9NZR4 LINC01301-204ENST00000530725 577 ntTSL 4 BASIC16.82■□□□□ 0.28
VSX1Q9NZR4 RARRES2P10-201ENST00000564312 460 ntBASIC16.82■□□□□ 0.28
VSX1Q9NZR4 ZNF599-203ENST00000588760 948 ntTSL 2 BASIC16.82■□□□□ 0.28
VSX1Q9NZR4 JADE2-211ENST00000612830 1251 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 58.6 ms