Protein–RNA interactions for Protein: Q9NUL7

DDX28, Probable ATP-dependent RNA helicase DDX28, humanhuman

Known RBP Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX28Q9NUL7 GTF2H4-201ENST00000259895 1735 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
DDX28Q9NUL7 RBM42-204ENST00000589559 1328 ntTSL 5 BASIC17.24■□□□□ 0.35
DDX28Q9NUL7 PLCB2-201ENST00000260402 4616 ntAPPRIS P3 TSL 2 BASIC17.24■□□□□ 0.35
DDX28Q9NUL7 TWF1-201ENST00000395510 3045 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
DDX28Q9NUL7 RNF121-201ENST00000361756 2625 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
DDX28Q9NUL7 SNX7-205ENST00000529992 1589 ntTSL 2 BASIC17.24■□□□□ 0.35
DDX28Q9NUL7 GSR-201ENST00000221130 3119 ntAPPRIS P3 TSL 1 (best) BASIC17.24■□□□□ 0.35
DDX28Q9NUL7 GRM2-204ENST00000442933 2064 ntTSL 5 BASIC17.24■□□□□ 0.35
DDX28Q9NUL7 FAM66B-201ENST00000529456 1432 ntTSL 2 BASIC17.24■□□□□ 0.35
DDX28Q9NUL7 CENPT-208ENST00000562787 2345 ntAPPRIS P2 TSL 2 BASIC17.24■□□□□ 0.35
DDX28Q9NUL7 EMC6-202ENST00000397133 762 ntAPPRIS P1 TSL 2 BASIC17.24■□□□□ 0.35
DDX28Q9NUL7 AC012146.1-202ENST00000413077 474 ntTSL 2 BASIC17.24■□□□□ 0.35
DDX28Q9NUL7 TSPY20P-201ENST00000450910 630 ntBASIC17.24■□□□□ 0.35
DDX28Q9NUL7 WWTR1-AS1-203ENST00000495094 975 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
DDX28Q9NUL7 CKLF-CMTM1-204ENST00000532838 587 ntAPPRIS ALT2 TSL 4 BASIC17.24■□□□□ 0.35
DDX28Q9NUL7 KRT18P6-201ENST00000555540 1265 ntBASIC17.24■□□□□ 0.35
DDX28Q9NUL7 AC090527.2-201ENST00000564080 1060 ntAPPRIS P1 TSL 3 BASIC17.24■□□□□ 0.35
DDX28Q9NUL7 ASGR1-204ENST00000572879 797 ntTSL 5 BASIC17.24■□□□□ 0.35
DDX28Q9NUL7 TNNI3-207ENST00000588882 669 ntTSL 2 BASIC17.24■□□□□ 0.35
DDX28Q9NUL7 PTMS-207ENST00000619580 1150 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
DDX28Q9NUL7 HSD11B1L-219ENST00000581893 1540 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
DDX28Q9NUL7 WT1-211ENST00000639907 1545 ntAPPRIS ALT2 TSL 2 BASIC17.24■□□□□ 0.35
DDX28Q9NUL7 FAM57A-201ENST00000301324 2013 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
DDX28Q9NUL7 SEMA5B-202ENST00000357599 4792 ntAPPRIS P3 TSL 1 (best) BASIC17.24■□□□□ 0.35
DDX28Q9NUL7 FAM184A-201ENST00000338891 4141 ntAPPRIS P4 TSL 1 (best) BASIC17.24■□□□□ 0.35
DDX28Q9NUL7 KCNE5-201ENST00000372101 1473 ntAPPRIS P1 BASIC17.24■□□□□ 0.35
DDX28Q9NUL7 DBNDD2-206ENST00000372720 1481 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
DDX28Q9NUL7 AC018553.1-201ENST00000616682 1458 ntBASIC17.24■□□□□ 0.35
DDX28Q9NUL7 ZNF346-201ENST00000358149 2314 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
DDX28Q9NUL7 EPOR-208ENST00000592375 2086 ntTSL 2 BASIC17.24■□□□□ 0.35
DDX28Q9NUL7 RREB1-204ENST00000379938 8778 ntAPPRIS P3 TSL 1 (best) BASIC17.24■□□□□ 0.35
DDX28Q9NUL7 ACTN3-203ENST00000513398 2939 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
DDX28Q9NUL7 LLGL2-203ENST00000392550 3509 ntAPPRIS P2 TSL 1 (best) BASIC17.24■□□□□ 0.35
DDX28Q9NUL7 CARD11-203ENST00000396946 4366 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
DDX28Q9NUL7 DPF1-209ENST00000456296 1562 ntAPPRIS P1 TSL 5 BASIC17.23■□□□□ 0.35
DDX28Q9NUL7 ZNF346-209ENST00000512315 1575 ntTSL 2 BASIC17.23■□□□□ 0.35
DDX28Q9NUL7 LINC01465-201ENST00000408887 1940 ntBASIC17.23■□□□□ 0.35
DDX28Q9NUL7 PTAR1-205ENST00000472967 1689 ntTSL 2 BASIC17.23■□□□□ 0.35
DDX28Q9NUL7 LHX8-202ENST00000356261 1764 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
DDX28Q9NUL7 NRN1-204ENST00000622188 1795 ntTSL 2 BASIC17.23■□□□□ 0.35
DDX28Q9NUL7 ANKRD13D-216ENST00000514166 2138 ntTSL 2 BASIC17.23■□□□□ 0.35
DDX28Q9NUL7 BSCL2-207ENST00000407022 1516 ntAPPRIS P3 TSL 1 (best) BASIC17.23■□□□□ 0.35
DDX28Q9NUL7 RAB4B-EGLN2-201ENST00000594136 2554 ntAPPRIS P1 TSL 2 BASIC17.23■□□□□ 0.35
DDX28Q9NUL7 N4BP1-201ENST00000262384 7106 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
DDX28Q9NUL7 DVL2-201ENST00000005340 3018 ntAPPRIS P2 TSL 1 (best) BASIC17.23■□□□□ 0.35
DDX28Q9NUL7 SNAP23-201ENST00000249647 2687 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
DDX28Q9NUL7 ICA1-201ENST00000265577 2309 ntAPPRIS ALT1 TSL 5 BASIC17.23■□□□□ 0.35
DDX28Q9NUL7 QPRT-202ENST00000395384 2343 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
DDX28Q9NUL7 SBK2-201ENST00000344158 1056 ntAPPRIS P1 TSL 2 BASIC17.23■□□□□ 0.35
DDX28Q9NUL7 CBY3-201ENST00000376974 785 ntAPPRIS P1 TSL 2 BASIC17.23■□□□□ 0.35
DDX28Q9NUL7 N4BP2L1-203ENST00000380133 903 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
DDX28Q9NUL7 CALM3-202ENST00000391918 702 ntTSL 2 BASIC17.23■□□□□ 0.35
DDX28Q9NUL7 CYYR1-202ENST00000400043 735 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
DDX28Q9NUL7 SBK2-202ENST00000413299 1085 ntAPPRIS P1 TSL 5 BASIC17.23■□□□□ 0.35
DDX28Q9NUL7 PPP1R14BP2-201ENST00000426284 444 ntBASIC17.23■□□□□ 0.35
DDX28Q9NUL7 METTL21A-207ENST00000442521 1003 ntAPPRIS P1 TSL 2 BASIC17.23■□□□□ 0.35
DDX28Q9NUL7 HAGLR-207ENST00000452365 661 ntTSL 4 BASIC17.23■□□□□ 0.35
DDX28Q9NUL7 AC006252.1-201ENST00000483834 1101 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
DDX28Q9NUL7 HES2-206ENST00000489730 730 ntTSL 2 BASIC17.23■□□□□ 0.35
DDX28Q9NUL7 AC092143.2-201ENST00000554623 985 ntTSL 3 BASIC17.23■□□□□ 0.35
DDX28Q9NUL7 MYC-209ENST00000641252 345 ntBASIC17.23■□□□□ 0.35
DDX28Q9NUL7 PALM-201ENST00000264560 2755 ntAPPRIS ALT2 TSL 4 BASIC17.23■□□□□ 0.35
DDX28Q9NUL7 APMAP-201ENST00000217456 2430 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
DDX28Q9NUL7 CAMKK2-206ENST00000402834 2051 ntAPPRIS P4 TSL 1 (best) BASIC17.23■□□□□ 0.35
DDX28Q9NUL7 FAM184A-214ENST00000621231 4048 ntTSL 5 BASIC17.23■□□□□ 0.35
DDX28Q9NUL7 ZBTB45-202ENST00000594051 2541 ntAPPRIS P1 TSL 2 BASIC17.23■□□□□ 0.35
DDX28Q9NUL7 PGM5-202ENST00000396396 3338 ntAPPRIS P1 TSL 2 BASIC17.23■□□□□ 0.35
DDX28Q9NUL7 SERPINB6-204ENST00000380529 1370 ntAPPRIS P1 TSL 2 BASIC17.23■□□□□ 0.35
DDX28Q9NUL7 PCBP3-205ENST00000400310 2168 ntTSL 2 BASIC17.23■□□□□ 0.35
DDX28Q9NUL7 PARD3-205ENST00000374773 3420 ntTSL 5 BASIC17.23■□□□□ 0.35
DDX28Q9NUL7 CA11-201ENST00000084798 1844 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
DDX28Q9NUL7 CAMKMT-201ENST00000378494 1495 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
DDX28Q9NUL7 ZNF771-202ENST00000434417 1454 ntAPPRIS P1 TSL 2 BASIC17.23■□□□□ 0.35
DDX28Q9NUL7 RNF128-201ENST00000255499 2817 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
DDX28Q9NUL7 PKDREJ-201ENST00000253255 7693 ntAPPRIS P1 BASIC17.23■□□□□ 0.35
DDX28Q9NUL7 GRK6-201ENST00000355472 2939 ntAPPRIS P3 TSL 1 (best) BASIC17.23■□□□□ 0.35
DDX28Q9NUL7 ARHGDIA-202ENST00000400721 1568 ntTSL 2 BASIC17.23■□□□□ 0.35
DDX28Q9NUL7 CCT7-215ENST00000539919 2031 ntTSL 2 BASIC17.23■□□□□ 0.35
DDX28Q9NUL7 XKR4-203ENST00000622811 3907 ntAPPRIS P1 TSL 5 BASIC17.23■□□□□ 0.35
DDX28Q9NUL7 ARHGEF19-201ENST00000270747 3029 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
DDX28Q9NUL7 CARD9-201ENST00000371732 2123 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
DDX28Q9NUL7 KRT18-207ENST00000550600 1696 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
DDX28Q9NUL7 CACNA1A-202ENST00000573710 7569 ntAPPRIS ALT2 TSL 5 BASIC17.23■□□□□ 0.35
DDX28Q9NUL7 INTS11-250ENST00000620829 1862 ntTSL 2 BASIC17.22■□□□□ 0.35
DDX28Q9NUL7 PGAP1-204ENST00000409475 2443 ntTSL 2 BASIC17.22■□□□□ 0.35
DDX28Q9NUL7 ABHD1-201ENST00000316470 1400 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
DDX28Q9NUL7 COX20-203ENST00000411948 2631 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
DDX28Q9NUL7 CASP6-201ENST00000265164 1548 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
DDX28Q9NUL7 PPM1D-204ENST00000629650 1525 ntTSL 5 BASIC17.22■□□□□ 0.35
DDX28Q9NUL7 KSR1-201ENST00000268763 2806 ntAPPRIS ALT2 TSL 5 BASIC17.22■□□□□ 0.35
DDX28Q9NUL7 SUPT4H1-202ENST00000577396 1643 ntTSL 2 BASIC17.22■□□□□ 0.35
DDX28Q9NUL7 OR6D1P-203ENST00000641209 4860 ntBASIC17.22■□□□□ 0.35
DDX28Q9NUL7 LTBP2-205ENST00000556690 5614 ntAPPRIS ALT2 TSL 5 BASIC17.22■□□□□ 0.35
DDX28Q9NUL7 DIXDC1-208ENST00000615255 4825 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
DDX28Q9NUL7 MT3-201ENST00000200691 569 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
DDX28Q9NUL7 APCDD1-201ENST00000355285 3809 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
DDX28Q9NUL7 GPR3-201ENST00000374024 2115 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
DDX28Q9NUL7 RER1-204ENST00000378518 522 ntTSL 3 BASIC17.22■□□□□ 0.35
DDX28Q9NUL7 IL15RA-208ENST00000397251 1046 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
DDX28Q9NUL7 RHEB-204ENST00000472642 900 ntTSL 3 BASIC17.22■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 29.1 ms