Protein–RNA interactions for Protein: Q9HBJ7

USP29, Ubiquitin carboxyl-terminal hydrolase 29, humanhuman

Predictions only

Length 922 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP29Q9HBJ7 ABBA01031674.1-201ENST00000635145 728 ntBASIC19.44■□□□□ 0.7
USP29Q9HBJ7 ATRIP-201ENST00000320211 2590 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
USP29Q9HBJ7 PCCB-216ENST00000483687 1727 ntTSL 3 BASIC19.44■□□□□ 0.7
USP29Q9HBJ7 ZHX3-212ENST00000558993 1528 ntTSL 5 BASIC19.44■□□□□ 0.7
USP29Q9HBJ7 FOXI1-201ENST00000306268 1990 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
USP29Q9HBJ7 SRI-203ENST00000419179 1307 ntTSL 2 BASIC19.44■□□□□ 0.7
USP29Q9HBJ7 MFSD1-201ENST00000264266 1594 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
USP29Q9HBJ7 ARAP1-AS2-201ENST00000500163 1824 ntTSL 2 BASIC19.44■□□□□ 0.7
USP29Q9HBJ7 GTF3A-201ENST00000381140 1383 ntAPPRIS ALT2 TSL 1 (best) BASIC19.44■□□□□ 0.7
USP29Q9HBJ7 SPIRE2-201ENST00000378247 3235 ntAPPRIS P2 TSL 1 (best) BASIC19.44■□□□□ 0.7
USP29Q9HBJ7 SNX11-203ENST00000452859 1601 ntTSL 2 BASIC19.43■□□□□ 0.7
USP29Q9HBJ7 KRT24-201ENST00000264651 1881 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
USP29Q9HBJ7 CCNJ-202ENST00000403870 2830 ntTSL 5 BASIC19.43■□□□□ 0.7
USP29Q9HBJ7 PLCB2-204ENST00000557821 4517 ntAPPRIS ALT1 TSL 1 (best) BASIC19.43■□□□□ 0.7
USP29Q9HBJ7 DLGAP4-201ENST00000339266 5016 ntAPPRIS ALT2 TSL 5 BASIC19.43■□□□□ 0.7
USP29Q9HBJ7 PNPLA2-201ENST00000336615 2428 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
USP29Q9HBJ7 AK3-202ENST00000381809 2736 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
USP29Q9HBJ7 DNM1-206ENST00000475805 2710 ntAPPRIS ALT1 TSL 2 BASIC19.43■□□□□ 0.7
USP29Q9HBJ7 IFFO1-212ENST00000619571 2724 ntTSL 2 BASIC19.43■□□□□ 0.7
USP29Q9HBJ7 MFSD10-202ENST00000355443 1753 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
USP29Q9HBJ7 PRR5-201ENST00000006251 1767 ntTSL 2 BASIC19.43■□□□□ 0.7
USP29Q9HBJ7 NDUFB10-201ENST00000268668 705 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
USP29Q9HBJ7 CTNNBIP1-204ENST00000400904 1206 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
USP29Q9HBJ7 CCK-203ENST00000434608 747 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
USP29Q9HBJ7 AL359747.1-201ENST00000442370 536 ntTSL 2 BASIC19.43■□□□□ 0.7
USP29Q9HBJ7 KSR1P1-201ENST00000446298 240 ntBASIC19.43■□□□□ 0.7
USP29Q9HBJ7 FOSL1-204ENST00000532401 1132 ntTSL 2 BASIC19.43■□□□□ 0.7
USP29Q9HBJ7 TK2-213ENST00000563369 882 ntTSL 5 BASIC19.43■□□□□ 0.7
USP29Q9HBJ7 CD209-209ENST00000601256 994 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
USP29Q9HBJ7 DECR2-212ENST00000627716 352 ntTSL 2 BASIC19.43■□□□□ 0.7
USP29Q9HBJ7 ZNRF1-202ENST00000335325 4620 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
USP29Q9HBJ7 FAM90A1-201ENST00000307435 2342 ntAPPRIS P1 TSL 2 BASIC19.43■□□□□ 0.7
USP29Q9HBJ7 RNF139-201ENST00000303545 2637 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
USP29Q9HBJ7 CUTC-202ENST00000370476 1346 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
USP29Q9HBJ7 LONP1-215ENST00000593119 2918 ntTSL 2 BASIC19.43■□□□□ 0.7
USP29Q9HBJ7 SOX4-201ENST00000244745 5852 ntAPPRIS P1 BASIC19.43■□□□□ 0.7
USP29Q9HBJ7 NECTIN3-211ENST00000493615 1876 ntAPPRIS ALT2 TSL 2 BASIC19.43■□□□□ 0.7
USP29Q9HBJ7 NAF1-202ENST00000422287 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC19.43■□□□□ 0.7
USP29Q9HBJ7 CNOT9-209ENST00000627282 1621 ntTSL 2 BASIC19.43■□□□□ 0.7
USP29Q9HBJ7 ZBTB8A-201ENST00000316459 1943 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
USP29Q9HBJ7 FGFBP3-201ENST00000311575 2545 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
USP29Q9HBJ7 PCDH8-202ENST00000377942 5088 ntAPPRIS P4 TSL 1 (best) BASIC19.43■□□□□ 0.7
USP29Q9HBJ7 GAS2L1P2-202ENST00000442849 2262 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
USP29Q9HBJ7 SLC16A13-201ENST00000308027 1748 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
USP29Q9HBJ7 ANO7L1-203ENST00000602586 1720 ntBASIC19.42■□□□□ 0.7
USP29Q9HBJ7 SCARF1-202ENST00000348987 2619 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
USP29Q9HBJ7 FN3KRP-201ENST00000269373 1849 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
USP29Q9HBJ7 AP5S1-203ENST00000379573 1848 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
USP29Q9HBJ7 SUMF2-202ENST00000342190 1876 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
USP29Q9HBJ7 ARRB1-201ENST00000360025 1895 ntAPPRIS P3 TSL 1 (best) BASIC19.42■□□□□ 0.7
USP29Q9HBJ7 KLHL40-201ENST00000287777 2517 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
USP29Q9HBJ7 ADK-206ENST00000541550 2222 ntTSL 2 BASIC19.42■□□□□ 0.7
USP29Q9HBJ7 CLDND2-201ENST00000291715 974 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
USP29Q9HBJ7 SPAG16-207ENST00000432529 1250 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
USP29Q9HBJ7 AC091390.4-202ENST00000476426 537 ntBASIC19.42■□□□□ 0.7
USP29Q9HBJ7 LINC01184-202ENST00000501173 949 ntTSL 5 BASIC19.42■□□□□ 0.7
USP29Q9HBJ7 ROPN1L-202ENST00000503804 1291 ntAPPRIS P1 TSL 2 BASIC19.42■□□□□ 0.7
USP29Q9HBJ7 PPOX-219ENST00000544598 813 ntTSL 2 BASIC19.42■□□□□ 0.7
USP29Q9HBJ7 GBGT1-208ENST00000540636 1934 ntTSL 2 BASIC19.42■□□□□ 0.7
USP29Q9HBJ7 COBL-210ENST00000632460 1941 ntTSL 5 BASIC19.42■□□□□ 0.7
USP29Q9HBJ7 ABHD14B-202ENST00000361143 1636 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
USP29Q9HBJ7 SCFD2-204ENST00000611795 1320 ntTSL 5 BASIC19.42■□□□□ 0.7
USP29Q9HBJ7 FMR1-207ENST00000439526 3699 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
USP29Q9HBJ7 ZNF787-202ENST00000587279 1657 ntTSL 2 BASIC19.42■□□□□ 0.7
USP29Q9HBJ7 SLC2A11-204ENST00000398356 2388 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
USP29Q9HBJ7 FAM213B-201ENST00000378424 2765 ntAPPRIS ALT2 TSL 5 BASIC19.42■□□□□ 0.7
USP29Q9HBJ7 CPEB2-207ENST00000507071 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
USP29Q9HBJ7 TRIM63-201ENST00000374272 1770 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
USP29Q9HBJ7 AC005082.1-201ENST00000413042 2259 ntBASIC19.41■□□□□ 0.7
USP29Q9HBJ7 NUMBL-202ENST00000540131 1931 ntAPPRIS ALT2 TSL 2 BASIC19.41■□□□□ 0.7
USP29Q9HBJ7 AP1AR-202ENST00000309703 2337 ntAPPRIS ALT1 TSL 1 (best) BASIC19.41■□□□□ 0.7
USP29Q9HBJ7 RCC2P6-201ENST00000526625 1557 ntBASIC19.41■□□□□ 0.7
USP29Q9HBJ7 HBEGF-201ENST00000230990 2386 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
USP29Q9HBJ7 NEUROD2-201ENST00000302584 2041 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
USP29Q9HBJ7 GAL3ST1-206ENST00000406955 1635 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
USP29Q9HBJ7 CECR2-202ENST00000342247 6178 ntAPPRIS ALT2 TSL 5 BASIC19.41■□□□□ 0.7
USP29Q9HBJ7 PTTG1IP-204ENST00000445724 2497 ntTSL 2 BASIC19.41■□□□□ 0.7
USP29Q9HBJ7 GORASP1-206ENST00000422110 2523 ntTSL 2 BASIC19.41■□□□□ 0.7
USP29Q9HBJ7 IL17C-201ENST00000244241 1044 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
USP29Q9HBJ7 TMEM223-201ENST00000307366 1288 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
USP29Q9HBJ7 CPZ-201ENST00000315782 2136 ntAPPRIS P3 TSL 1 (best) BASIC19.41■□□□□ 0.7
USP29Q9HBJ7 UBE2I-203ENST00000397514 2976 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
USP29Q9HBJ7 AP002982.1-201ENST00000492365 877 ntBASIC19.41■□□□□ 0.7
USP29Q9HBJ7 ANAPC11-207ENST00000572639 578 ntAPPRIS P1 TSL 3 BASIC19.41■□□□□ 0.7
USP29Q9HBJ7 L34079.3-201ENST00000600242 546 ntTSL 4 BASIC19.41■□□□□ 0.7
USP29Q9HBJ7 ATG4B-226ENST00000625810 370 ntTSL 4 BASIC19.41■□□□□ 0.7
USP29Q9HBJ7 GSTM4-201ENST00000326729 1321 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
USP29Q9HBJ7 STX5-202ENST00000377897 1785 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
USP29Q9HBJ7 TCP11-209ENST00000444780 1841 ntAPPRIS ALT2 TSL 2 BASIC19.41■□□□□ 0.7
USP29Q9HBJ7 CELF2-217ENST00000638035 1849 ntAPPRIS P3 TSL 5 BASIC19.41■□□□□ 0.7
USP29Q9HBJ7 ASIC3-202ENST00000349064 1895 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
USP29Q9HBJ7 P2RX2-206ENST00000389110 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
USP29Q9HBJ7 TBX20-201ENST00000408931 1871 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
USP29Q9HBJ7 PSTPIP1-203ENST00000558012 1896 ntAPPRIS P2 TSL 1 (best) BASIC19.41■□□□□ 0.7
USP29Q9HBJ7 MCU-202ENST00000373053 2949 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
USP29Q9HBJ7 USP36-203ENST00000542802 6063 ntAPPRIS P2 TSL 1 (best) BASIC19.41■□□□□ 0.7
USP29Q9HBJ7 GPR137-204ENST00000438980 1596 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
USP29Q9HBJ7 IGFALS-202ENST00000415638 2136 ntTSL 2 BASIC19.4■□□□□ 0.7
USP29Q9HBJ7 COPS7A-215ENST00000543155 2127 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
USP29Q9HBJ7 KCNIP4-206ENST00000447367 1641 ntTSL 5 BASIC19.4■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 54.1 ms