Protein–RNA interactions for Protein: Q9H400

LIME1, Lck-interacting transmembrane adapter 1, humanhuman

Predictions only

Length 295 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1Q9H400 MALL-203ENST00000427178 1070 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
LIME1Q9H400 AC005091.1-201ENST00000441955 1190 ntTSL 3 BASIC16.55■□□□□ 0.24
LIME1Q9H400 AC137630.1-201ENST00000452042 782 ntTSL 4 BASIC16.55■□□□□ 0.24
LIME1Q9H400 PRAP1-202ENST00000463201 587 ntAPPRIS ALT2 TSL 1 (best) BASIC16.55■□□□□ 0.24
LIME1Q9H400 GFOD2-207ENST00000602855 819 ntTSL 3 BASIC16.55■□□□□ 0.24
LIME1Q9H400 FBXO41-204ENST00000520530 3293 ntAPPRIS P1 TSL 5 BASIC16.55■□□□□ 0.24
LIME1Q9H400 PCBP3-206ENST00000400314 2202 ntAPPRIS P2 TSL 5 BASIC16.55■□□□□ 0.24
LIME1Q9H400 NRM-203ENST00000376421 1734 ntAPPRIS P2 TSL 1 (best) BASIC16.55■□□□□ 0.24
LIME1Q9H400 TCAIM-203ENST00000396078 2178 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
LIME1Q9H400 IKBKG-214ENST00000618670 2069 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
LIME1Q9H400 TMEM179-201ENST00000341595 2513 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
LIME1Q9H400 MON1A-202ENST00000417270 2527 ntAPPRIS ALT2 TSL 5 BASIC16.55■□□□□ 0.24
LIME1Q9H400 AC069544.2-201ENST00000640019 2528 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
LIME1Q9H400 NTRK1-201ENST00000358660 2492 ntAPPRIS ALT2 TSL 2 BASIC16.55■□□□□ 0.24
LIME1Q9H400 LINC01465-201ENST00000408887 1940 ntBASIC16.55■□□□□ 0.24
LIME1Q9H400 SPAG4-201ENST00000374273 1453 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
LIME1Q9H400 RGMA-208ENST00000556658 1889 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
LIME1Q9H400 FOLH1-203ENST00000343844 2258 ntTSL 2 BASIC16.54■□□□□ 0.24
LIME1Q9H400 IQCJ-SCHIP1-207ENST00000638749 2633 ntAPPRIS P3 TSL 1 (best) BASIC16.54■□□□□ 0.24
LIME1Q9H400 PLEKHM2-202ENST00000375799 4122 ntAPPRIS P2 TSL 1 (best) BASIC16.54■□□□□ 0.24
LIME1Q9H400 LGALS9C-209ENST00000581545 1378 ntTSL 5 BASIC16.54■□□□□ 0.24
LIME1Q9H400 KIF22-201ENST00000160827 2113 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
LIME1Q9H400 AKR7A3-201ENST00000361640 1710 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
LIME1Q9H400 MTURN-201ENST00000324453 5937 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
LIME1Q9H400 EVL-202ENST00000402714 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC16.54■□□□□ 0.24
LIME1Q9H400 CENPX-201ENST00000306704 751 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
LIME1Q9H400 CFL1-201ENST00000308162 1234 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
LIME1Q9H400 Telomerase-vert.1-201ENST00000363312 438 ntBASIC16.54■□□□□ 0.24
LIME1Q9H400 MRPL43-205ENST00000370234 798 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
LIME1Q9H400 MAP1LC3A-203ENST00000397709 698 ntAPPRIS P1 TSL 3 BASIC16.54■□□□□ 0.24
LIME1Q9H400 HDAC11-204ENST00000404040 967 ntTSL 3 BASIC16.54■□□□□ 0.24
LIME1Q9H400 DAP-202ENST00000432074 1048 ntTSL 2 BASIC16.54■□□□□ 0.24
LIME1Q9H400 AC074183.1-201ENST00000439105 782 ntTSL 5 BASIC16.54■□□□□ 0.24
LIME1Q9H400 HIGD1A-204ENST00000452906 585 ntTSL 2 BASIC16.54■□□□□ 0.24
LIME1Q9H400 DIO1-206ENST00000525202 558 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
LIME1Q9H400 AP002433.1-201ENST00000525548 964 ntTSL 3 BASIC16.54■□□□□ 0.24
LIME1Q9H400 AP003041.3-201ENST00000527151 707 ntBASIC16.54■□□□□ 0.24
LIME1Q9H400 AC022154.1-201ENST00000600303 766 ntTSL 3 BASIC16.54■□□□□ 0.24
LIME1Q9H400 GOLGA2P11-201ENST00000562660 1621 ntBASIC16.54■□□□□ 0.24
LIME1Q9H400 IL4I1-201ENST00000341114 2349 ntAPPRIS P4 TSL 1 (best) BASIC16.54■□□□□ 0.24
LIME1Q9H400 FBXL20-202ENST00000394294 2309 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
LIME1Q9H400 MEN1-206ENST00000377321 2614 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
LIME1Q9H400 OTUD1-201ENST00000376495 2933 ntAPPRIS P1 BASIC16.54■□□□□ 0.24
LIME1Q9H400 FKRP-202ENST00000391909 2801 ntAPPRIS P1 TSL 2 BASIC16.54■□□□□ 0.24
LIME1Q9H400 ING1-201ENST00000333219 5119 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
LIME1Q9H400 RAX2-201ENST00000555633 2414 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
LIME1Q9H400 KRT8P45-201ENST00000414328 1447 ntBASIC16.53■□□□□ 0.24
LIME1Q9H400 SOX12-201ENST00000342665 4630 ntAPPRIS P1 BASIC16.53■□□□□ 0.24
LIME1Q9H400 KLHL21-206ENST00000610898 1945 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
LIME1Q9H400 JPT1-203ENST00000409753 1605 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
LIME1Q9H400 C16orf58-202ENST00000430477 2471 ntAPPRIS P2 TSL 1 (best) BASIC16.53■□□□□ 0.24
LIME1Q9H400 AL032819.2-201ENST00000624543 2162 ntBASIC16.53■□□□□ 0.24
LIME1Q9H400 MARK2-204ENST00000402010 4728 ntAPPRIS ALT2 TSL 1 (best) BASIC16.53■□□□□ 0.24
LIME1Q9H400 ASAP2-202ENST00000315273 5582 ntAPPRIS ALT2 TSL 1 (best) BASIC16.53■□□□□ 0.24
LIME1Q9H400 MPG-201ENST00000219431 1193 ntAPPRIS P4 TSL 3 BASIC16.53■□□□□ 0.24
LIME1Q9H400 S100A11-201ENST00000271638 594 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
LIME1Q9H400 YPEL3-201ENST00000398838 935 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
LIME1Q9H400 C21orf91-202ENST00000400558 1090 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
LIME1Q9H400 AC112907.2-201ENST00000448639 330 ntBASIC16.53■□□□□ 0.24
LIME1Q9H400 AL451069.1-201ENST00000455414 634 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
LIME1Q9H400 FAM86C2P-201ENST00000525180 435 ntTSL 4 BASIC16.53■□□□□ 0.24
LIME1Q9H400 CMTM3-210ENST00000565666 769 ntTSL 3 BASIC16.53■□□□□ 0.24
LIME1Q9H400 AL512604.3-201ENST00000569583 964 ntBASIC16.53■□□□□ 0.24
LIME1Q9H400 AC008622.2-201ENST00000617006 1229 ntBASIC16.53■□□□□ 0.24
LIME1Q9H400 RNF187-203ENST00000639044 708 ntAPPRIS P2 TSL 1 (best) BASIC16.53■□□□□ 0.24
LIME1Q9H400 KLHDC4-203ENST00000347925 1821 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
LIME1Q9H400 WDSUB1-203ENST00000392796 1812 ntAPPRIS P1 TSL 2 BASIC16.53■□□□□ 0.24
LIME1Q9H400 DBNL-217ENST00000468694 2068 ntAPPRIS ALT2 TSL 2 BASIC16.53■□□□□ 0.24
LIME1Q9H400 TMEM250-201ENST00000418388 2823 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
LIME1Q9H400 TBC1D10A-204ENST00000403477 1950 ntAPPRIS ALT2 TSL 2 BASIC16.53■□□□□ 0.24
LIME1Q9H400 TTC19-201ENST00000261647 3002 ntAPPRIS P2 TSL 1 (best) BASIC16.53■□□□□ 0.24
LIME1Q9H400 TULP1-201ENST00000229771 2162 ntAPPRIS P2 TSL 1 (best) BASIC16.53■□□□□ 0.24
LIME1Q9H400 HMGA1-205ENST00000447654 2159 ntAPPRIS P4 TSL 1 (best) BASIC16.53■□□□□ 0.24
LIME1Q9H400 SLC34A3-202ENST00000538474 2162 ntAPPRIS P1 TSL 5 BASIC16.53■□□□□ 0.24
LIME1Q9H400 CCNJ-203ENST00000465148 2677 ntAPPRIS P1 TSL 2 BASIC16.53■□□□□ 0.24
LIME1Q9H400 DTX4-201ENST00000227451 5642 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
LIME1Q9H400 AGTR1-201ENST00000349243 2356 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
LIME1Q9H400 FAM189B-204ENST00000368368 2609 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
LIME1Q9H400 GRIN1-208ENST00000371561 5149 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
LIME1Q9H400 GGT2-201ENST00000401924 2366 ntAPPRIS P1 TSL 5 BASIC16.52■□□□□ 0.24
LIME1Q9H400 ETS1-207ENST00000531611 2134 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
LIME1Q9H400 SEMA7A-203ENST00000543145 2304 ntTSL 2 BASIC16.52■□□□□ 0.24
LIME1Q9H400 SEPT6-202ENST00000354228 1576 ntAPPRIS P4 TSL 1 (best) BASIC16.52■□□□□ 0.24
LIME1Q9H400 RBM14-RBM4-201ENST00000412278 1566 ntAPPRIS P1 TSL 2 BASIC16.52■□□□□ 0.24
LIME1Q9H400 LIN54-209ENST00000510557 2257 ntTSL 2 BASIC16.52■□□□□ 0.24
LIME1Q9H400 LRRC42-203ENST00000371370 2037 ntAPPRIS P1 TSL 2 BASIC16.52■□□□□ 0.24
LIME1Q9H400 GALNT8-202ENST00000433855 5977 ntTSL 2 BASIC16.52■□□□□ 0.24
LIME1Q9H400 ARHGAP9-202ENST00000393797 2912 ntAPPRIS ALT2 TSL 1 (best) BASIC16.52■□□□□ 0.24
LIME1Q9H400 LAMP1-201ENST00000332556 2699 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
LIME1Q9H400 POC1A-202ENST00000394970 1999 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
LIME1Q9H400 SLC5A10-205ENST00000417251 1984 ntTSL 2 BASIC16.52■□□□□ 0.24
LIME1Q9H400 ARHGAP22-210ENST00000477708 1951 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
LIME1Q9H400 PFKFB3-217ENST00000626882 1965 ntTSL 5 BASIC16.52■□□□□ 0.24
LIME1Q9H400 KRTAP5-10-201ENST00000398531 1176 ntAPPRIS P1 BASIC16.52■□□□□ 0.24
LIME1Q9H400 UBE2J2-205ENST00000400930 1021 ntTSL 5 BASIC16.52■□□□□ 0.24
LIME1Q9H400 AC246785.2-201ENST00000432512 513 ntBASIC16.52■□□□□ 0.24
LIME1Q9H400 TRIM73-203ENST00000437796 1169 ntAPPRIS P2 TSL 1 (best) BASIC16.52■□□□□ 0.24
LIME1Q9H400 PSMB5-205ENST00000493471 1117 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
LIME1Q9H400 AC127526.4-201ENST00000527970 983 ntTSL 3 BASIC16.52■□□□□ 0.24
LIME1Q9H400 AL132780.2-201ENST00000557615 1021 ntTSL 3 BASIC16.52■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 34.9 ms