Protein–RNA interactions for Protein: Q9BWF2

TRAIP, E3 ubiquitin-protein ligase TRAIP, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAIPQ9BWF2 CR769767.2-201ENST00000622735 460 ntBASIC20.64■□□□□ 0.89
TRAIPQ9BWF2 AP000550.4-202ENST00000639755 178 ntBASIC20.64■□□□□ 0.89
TRAIPQ9BWF2 DOC2A-201ENST00000350119 2071 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
TRAIPQ9BWF2 ST3GAL3-204ENST00000335430 1805 ntTSL 5 BASIC20.64■□□□□ 0.89
TRAIPQ9BWF2 ABCC5-204ENST00000392579 1848 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
TRAIPQ9BWF2 RIIAD1-201ENST00000326413 1772 ntTSL 2 BASIC20.64■□□□□ 0.89
TRAIPQ9BWF2 SLC11A2-208ENST00000546743 1740 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
TRAIPQ9BWF2 MYO15B-232ENST00000610510 9195 ntAPPRIS P1 TSL 5 BASIC20.64■□□□□ 0.89
TRAIPQ9BWF2 AMDHD1-201ENST00000266736 2260 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
TRAIPQ9BWF2 DDX59-201ENST00000331314 2289 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
TRAIPQ9BWF2 SCO1-203ENST00000577427 1601 ntTSL 3 BASIC20.64■□□□□ 0.89
TRAIPQ9BWF2 KLF16-201ENST00000250916 2890 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
TRAIPQ9BWF2 FAM216A-201ENST00000377673 1582 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
TRAIPQ9BWF2 PHKG2-202ENST00000424889 1566 ntTSL 2 BASIC20.63■□□□□ 0.89
TRAIPQ9BWF2 POLI-202ENST00000406285 2030 ntTSL 2 BASIC20.63■□□□□ 0.89
TRAIPQ9BWF2 MYH14-206ENST00000596571 5988 ntAPPRIS ALT2 TSL 5 BASIC20.63■□□□□ 0.89
TRAIPQ9BWF2 TAX1BP3-201ENST00000225525 1377 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
TRAIPQ9BWF2 NOP56-201ENST00000329276 2400 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
TRAIPQ9BWF2 GOLGA6L5P-202ENST00000515341 1828 ntBASIC20.63■□□□□ 0.89
TRAIPQ9BWF2 GGT1-205ENST00000403838 1033 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
TRAIPQ9BWF2 MALL-203ENST00000427178 1070 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
TRAIPQ9BWF2 AL671277.2-201ENST00000458060 996 ntBASIC20.63■□□□□ 0.89
TRAIPQ9BWF2 AF250324.1-201ENST00000506276 703 ntTSL 3 BASIC20.63■□□□□ 0.89
TRAIPQ9BWF2 GRP-204ENST00000529320 824 ntAPPRIS ALT2 TSL 1 (best) BASIC20.63■□□□□ 0.89
TRAIPQ9BWF2 RAP1B-229ENST00000543393 874 ntTSL 3 BASIC20.63■□□□□ 0.89
TRAIPQ9BWF2 NBPF14-202ENST00000593495 1082 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
TRAIPQ9BWF2 AC064853.5-201ENST00000641976 258 ntAPPRIS P1 BASIC20.63■□□□□ 0.89
TRAIPQ9BWF2 NEU4-201ENST00000325935 2288 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
TRAIPQ9BWF2 TMPRSS5-201ENST00000299882 2232 ntAPPRIS P3 TSL 1 (best) BASIC20.63■□□□□ 0.89
TRAIPQ9BWF2 ITPKB-203ENST00000429204 6162 ntAPPRIS P1 TSL 5 BASIC20.63■□□□□ 0.89
TRAIPQ9BWF2 CACNA1A-246ENST00000637736 8340 ntAPPRIS ALT2 TSL 5 BASIC20.63■□□□□ 0.89
TRAIPQ9BWF2 USP48-201ENST00000308271 4595 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
TRAIPQ9BWF2 MED25-201ENST00000312865 2332 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
TRAIPQ9BWF2 PIANP-201ENST00000320591 2323 ntAPPRIS P3 TSL 1 (best) BASIC20.62■□□□□ 0.89
TRAIPQ9BWF2 RBM26-207ENST00000622611 5230 ntTSL 2 BASIC20.62■□□□□ 0.89
TRAIPQ9BWF2 NLRP6-201ENST00000312165 2679 ntAPPRIS P3 TSL 1 (best) BASIC20.62■□□□□ 0.89
TRAIPQ9BWF2 MARK2-202ENST00000361128 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
TRAIPQ9BWF2 DLGAP4-201ENST00000339266 5016 ntAPPRIS ALT2 TSL 5 BASIC20.62■□□□□ 0.89
TRAIPQ9BWF2 DMRT2-201ENST00000259622 2459 ntTSL 2 BASIC20.62■□□□□ 0.89
TRAIPQ9BWF2 CIRBP-201ENST00000320936 1328 ntAPPRIS P3 TSL 1 (best) BASIC20.62■□□□□ 0.89
TRAIPQ9BWF2 CIRBP-207ENST00000586472 1303 ntAPPRIS P3 TSL 3 BASIC20.62■□□□□ 0.89
TRAIPQ9BWF2 SEC11C-202ENST00000509791 2054 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
TRAIPQ9BWF2 CTBP2-205ENST00000411419 2036 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
TRAIPQ9BWF2 ITPKB-202ENST00000366784 3146 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
TRAIPQ9BWF2 BET1L-202ENST00000332865 533 ntTSL 5 BASIC20.62■□□□□ 0.89
TRAIPQ9BWF2 DDRGK1-202ENST00000380201 1128 ntTSL 2 BASIC20.62■□□□□ 0.89
TRAIPQ9BWF2 ST6GALNAC4P1-201ENST00000435385 499 ntBASIC20.62■□□□□ 0.89
TRAIPQ9BWF2 C16orf91-201ENST00000442039 978 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
TRAIPQ9BWF2 KRT18P38-201ENST00000449496 1282 ntBASIC20.62■□□□□ 0.89
TRAIPQ9BWF2 SNX5-210ENST00000481323 562 ntTSL 3 BASIC20.62■□□□□ 0.89
TRAIPQ9BWF2 LCN10-205ENST00000497771 723 ntAPPRIS P2 TSL 1 (best) BASIC20.62■□□□□ 0.89
TRAIPQ9BWF2 FAM53C-211ENST00000513056 923 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
TRAIPQ9BWF2 AP000777.3-201ENST00000538705 491 ntTSL 3 BASIC20.62■□□□□ 0.89
TRAIPQ9BWF2 AC021739.3-201ENST00000557908 855 ntTSL 2 BASIC20.62■□□□□ 0.89
TRAIPQ9BWF2 MTHFS-202ENST00000559722 948 ntTSL 2 BASIC20.62■□□□□ 0.89
TRAIPQ9BWF2 CENPS-CORT-205ENST00000602787 571 ntAPPRIS P1 TSL 3 BASIC20.62■□□□□ 0.89
TRAIPQ9BWF2 AL772307.1-201ENST00000639363 1066 ntTSL 2 BASIC20.62■□□□□ 0.89
TRAIPQ9BWF2 SCARB1-201ENST00000261693 2611 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
TRAIPQ9BWF2 PFDN6-206ENST00000463584 1915 ntTSL 3 BASIC20.62■□□□□ 0.89
TRAIPQ9BWF2 ADAMTS19-205ENST00000638972 5089 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
TRAIPQ9BWF2 RELB-202ENST00000505236 2219 ntAPPRIS ALT2 TSL 5 BASIC20.62■□□□□ 0.89
TRAIPQ9BWF2 RHOBTB2-201ENST00000251822 5451 ntAPPRIS P3 TSL 1 (best) BASIC20.62■□□□□ 0.89
TRAIPQ9BWF2 IRF7-202ENST00000348655 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
TRAIPQ9BWF2 RBM45-201ENST00000286070 1785 ntAPPRIS P2 TSL 1 (best) BASIC20.62■□□□□ 0.89
TRAIPQ9BWF2 TREX1-205ENST00000625293 1783 ntBASIC20.62■□□□□ 0.89
TRAIPQ9BWF2 ZXDB-201ENST00000374888 5894 ntAPPRIS P1 BASIC20.61■□□□□ 0.89
TRAIPQ9BWF2 BTNL9-210ENST00000515271 1444 ntTSL 2 BASIC20.61■□□□□ 0.89
TRAIPQ9BWF2 EVC-201ENST00000264956 6431 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
TRAIPQ9BWF2 BACE2-202ENST00000330333 2993 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
TRAIPQ9BWF2 FAM109B-201ENST00000321753 2335 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
TRAIPQ9BWF2 RUBCN-206ENST00000449205 1603 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
TRAIPQ9BWF2 GPR139-202ENST00000570682 1613 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
TRAIPQ9BWF2 TCP11-204ENST00000373979 1882 ntAPPRIS P3 TSL 5 BASIC20.61■□□□□ 0.89
TRAIPQ9BWF2 NDUFA1-201ENST00000371437 766 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
TRAIPQ9BWF2 COPS8-203ENST00000409334 794 ntTSL 5 BASIC20.61■□□□□ 0.89
TRAIPQ9BWF2 DAP-202ENST00000432074 1048 ntTSL 2 BASIC20.61■□□□□ 0.89
TRAIPQ9BWF2 AL359075.1-203ENST00000462729 1002 ntBASIC20.61■□□□□ 0.89
TRAIPQ9BWF2 EHMT1-211ENST00000482340 691 ntTSL 5 BASIC20.61■□□□□ 0.89
TRAIPQ9BWF2 GCSHP2-201ENST00000560971 527 ntBASIC20.61■□□□□ 0.89
TRAIPQ9BWF2 ILKAP-212ENST00000622223 1088 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
TRAIPQ9BWF2 SPINK2-207ENST00000631082 392 ntTSL 5 BASIC20.61■□□□□ 0.89
TRAIPQ9BWF2 SREBF2-209ENST00000612482 5365 ntTSL 5 BASIC20.61■□□□□ 0.89
TRAIPQ9BWF2 PLCB2-204ENST00000557821 4517 ntAPPRIS ALT1 TSL 1 (best) BASIC20.61■□□□□ 0.89
TRAIPQ9BWF2 AL020996.1-203ENST00000536896 2307 ntBASIC20.61■□□□□ 0.89
TRAIPQ9BWF2 AC098818.2-201ENST00000564925 2320 ntBASIC20.61■□□□□ 0.89
TRAIPQ9BWF2 BST1-201ENST00000265016 1480 ntAPPRIS P2 TSL 1 (best) BASIC20.61■□□□□ 0.89
TRAIPQ9BWF2 CD2AP-201ENST00000359314 5412 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
TRAIPQ9BWF2 KRT8P3-201ENST00000519669 1449 ntBASIC20.61■□□□□ 0.89
TRAIPQ9BWF2 IFNL4-203ENST00000634680 1421 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
TRAIPQ9BWF2 MAFG-AS1-201ENST00000582106 1895 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
TRAIPQ9BWF2 PRKAG2-203ENST00000418337 2318 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
TRAIPQ9BWF2 C5orf47-201ENST00000340147 2522 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
TRAIPQ9BWF2 AC005332.7-201ENST00000614046 2005 ntBASIC20.6■□□□□ 0.89
TRAIPQ9BWF2 DMKN-208ENST00000424570 1293 ntAPPRIS ALT2 TSL 1 (best) BASIC20.6■□□□□ 0.89
TRAIPQ9BWF2 AL133410.2-201ENST00000425499 696 ntTSL 5 BASIC20.6■□□□□ 0.89
TRAIPQ9BWF2 AC004540.1-201ENST00000439120 891 ntTSL 2 BASIC20.6■□□□□ 0.89
TRAIPQ9BWF2 LINC01063-201ENST00000441644 348 ntTSL 3 BASIC20.6■□□□□ 0.89
TRAIPQ9BWF2 AC005091.1-201ENST00000441955 1190 ntTSL 3 BASIC20.6■□□□□ 0.89
TRAIPQ9BWF2 C5orf49-202ENST00000509627 1020 ntAPPRIS ALT2 TSL 1 (best) BASIC20.6■□□□□ 0.89
TRAIPQ9BWF2 LY6E-213ENST00000522528 606 ntTSL 3 BASIC20.6■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 24.6 ms