Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 AL162231.1-203ENST00000416454 465 ntAPPRIS ALT2 TSL 2 BASIC14.6□□□□□ -0.07
CCDC140Q96MF4 AL390955.1-201ENST00000428694 934 ntBASIC14.6□□□□□ -0.07
CCDC140Q96MF4 CT47A1-201ENST00000433030 1288 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
CCDC140Q96MF4 AC134349.1-201ENST00000543969 385 ntTSL 3 BASIC14.6□□□□□ -0.07
CCDC140Q96MF4 PDCD5-207ENST00000590247 699 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
CCDC140Q96MF4 AC068587.9-201ENST00000641814 219 ntBASIC14.6□□□□□ -0.07
CCDC140Q96MF4 AP001351.1-201ENST00000501397 1865 ntTSL 2 BASIC14.6□□□□□ -0.07
CCDC140Q96MF4 AC138356.1-201ENST00000330539 2086 ntTSL 2 BASIC14.6□□□□□ -0.07
CCDC140Q96MF4 METRN-204ENST00000568223 3325 ntAPPRIS P2 TSL 1 (best) BASIC14.6□□□□□ -0.07
CCDC140Q96MF4 SPSB1-201ENST00000328089 3120 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
CCDC140Q96MF4 SPAG1-206ENST00000520643 1723 ntTSL 2 BASIC14.6□□□□□ -0.07
CCDC140Q96MF4 AC027031.2-201ENST00000521369 1318 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
CCDC140Q96MF4 TEX13A-202ENST00000609007 1349 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
CCDC140Q96MF4 GFI1-201ENST00000294702 2784 ntAPPRIS P1 TSL 2 BASIC14.6□□□□□ -0.07
CCDC140Q96MF4 DNAJC8-201ENST00000263697 1759 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
CCDC140Q96MF4 APIP-201ENST00000395787 1366 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
CCDC140Q96MF4 LRCH3-207ENST00000441090 2034 ntTSL 2 BASIC14.59□□□□□ -0.07
CCDC140Q96MF4 CFAP46-201ENST00000368585 1825 ntAPPRIS ALT2 TSL 2 BASIC14.59□□□□□ -0.07
CCDC140Q96MF4 ARSA-203ENST00000395619 1824 ntAPPRIS P1 TSL 5 BASIC14.59□□□□□ -0.07
CCDC140Q96MF4 HEXDC-203ENST00000577944 1820 ntTSL 5 BASIC14.59□□□□□ -0.07
CCDC140Q96MF4 AL138781.2-201ENST00000617896 1843 ntBASIC14.59□□□□□ -0.07
CCDC140Q96MF4 OTUD1-201ENST00000376495 2933 ntAPPRIS P1 BASIC14.59□□□□□ -0.07
CCDC140Q96MF4 HOXB6-201ENST00000225648 1660 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
CCDC140Q96MF4 ZNF787-202ENST00000587279 1657 ntTSL 2 BASIC14.59□□□□□ -0.07
CCDC140Q96MF4 CPZ-201ENST00000315782 2136 ntAPPRIS P3 TSL 1 (best) BASIC14.59□□□□□ -0.07
CCDC140Q96MF4 PAQR6-201ENST00000292291 1908 ntAPPRIS P3 TSL 1 (best) BASIC14.59□□□□□ -0.07
CCDC140Q96MF4 COBL-210ENST00000632460 1941 ntTSL 5 BASIC14.59□□□□□ -0.07
CCDC140Q96MF4 GALE-201ENST00000374497 1488 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
CCDC140Q96MF4 MARK1-202ENST00000366918 5169 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
CCDC140Q96MF4 TMEM235-201ENST00000374946 2409 ntTSL 5 BASIC14.59□□□□□ -0.07
CCDC140Q96MF4 PRODH-215ENST00000610940 2405 ntAPPRIS P3 TSL 1 (best) BASIC14.59□□□□□ -0.07
CCDC140Q96MF4 HAUS1-201ENST00000282058 1125 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
CCDC140Q96MF4 PRR31-201ENST00000371629 978 ntTSL 2 BASIC14.59□□□□□ -0.07
CCDC140Q96MF4 LINC02256-201ENST00000561999 366 ntTSL 3 BASIC14.59□□□□□ -0.07
CCDC140Q96MF4 RCC2P3-201ENST00000418112 1537 ntBASIC14.59□□□□□ -0.07
CCDC140Q96MF4 MTMR9LP-203ENST00000426597 1545 ntBASIC14.59□□□□□ -0.07
CCDC140Q96MF4 CXorf40A-208ENST00000434353 1524 ntAPPRIS ALT1 TSL 5 BASIC14.59□□□□□ -0.07
CCDC140Q96MF4 CCNA1-202ENST00000440264 1758 ntAPPRIS P1 TSL 2 BASIC14.59□□□□□ -0.07
CCDC140Q96MF4 SEPT9-246ENST00000592951 1793 ntAPPRIS ALT2 TSL 2 BASIC14.59□□□□□ -0.07
CCDC140Q96MF4 SLC29A2-201ENST00000311161 2262 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
CCDC140Q96MF4 ZBTB48-202ENST00000377674 2293 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
CCDC140Q96MF4 RASSF1-210ENST00000616212 1842 ntTSL 2 BASIC14.59□□□□□ -0.07
CCDC140Q96MF4 TAPT1-201ENST00000405303 4591 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
CCDC140Q96MF4 APBB1-210ENST00000530885 1626 ntTSL 2 BASIC14.59□□□□□ -0.07
CCDC140Q96MF4 RBM26-202ENST00000438724 5152 ntAPPRIS ALT1 TSL 1 (best) BASIC14.59□□□□□ -0.07
CCDC140Q96MF4 DGKI-202ENST00000424189 4163 ntAPPRIS ALT2 TSL 5 BASIC14.59□□□□□ -0.07
CCDC140Q96MF4 GPR83-202ENST00000539203 1909 ntTSL 5 BASIC14.58□□□□□ -0.07
CCDC140Q96MF4 IFNL4-203ENST00000634680 1421 ntAPPRIS ALT2 TSL 1 (best) BASIC14.58□□□□□ -0.07
CCDC140Q96MF4 ENTPD6-201ENST00000354989 2708 ntAPPRIS ALT2 TSL 1 (best) BASIC14.58□□□□□ -0.07
CCDC140Q96MF4 RNPEPL1-201ENST00000270357 5658 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.07
CCDC140Q96MF4 ANO7L1-203ENST00000602586 1720 ntBASIC14.58□□□□□ -0.07
CCDC140Q96MF4 FAM72C-202ENST00000584486 2297 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
CCDC140Q96MF4 AC004890.2-202ENST00000463462 1494 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
CCDC140Q96MF4 TRIP4-201ENST00000261884 2045 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
CCDC140Q96MF4 LRCH4-201ENST00000310300 2552 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
CCDC140Q96MF4 MEN1-205ENST00000377316 2868 ntTSL 5 BASIC14.58□□□□□ -0.08
CCDC140Q96MF4 HCN2-201ENST00000251287 3408 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
CCDC140Q96MF4 SREBF2-209ENST00000612482 5365 ntTSL 5 BASIC14.58□□□□□ -0.08
CCDC140Q96MF4 KRT81-202ENST00000615839 1505 ntAPPRIS ALT2 TSL 5 BASIC14.58□□□□□ -0.08
CCDC140Q96MF4 TPPP3-201ENST00000290942 1116 ntAPPRIS P1 TSL 2 BASIC14.58□□□□□ -0.08
CCDC140Q96MF4 TPPP3-202ENST00000393957 1058 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
CCDC140Q96MF4 HDAC11-205ENST00000404548 577 ntTSL 4 BASIC14.58□□□□□ -0.08
CCDC140Q96MF4 MIR1238-201ENST00000408483 83 ntBASIC14.58□□□□□ -0.08
CCDC140Q96MF4 AL596275.1-201ENST00000423464 877 ntBASIC14.58□□□□□ -0.08
CCDC140Q96MF4 TSPY15P-201ENST00000457163 923 ntBASIC14.58□□□□□ -0.08
CCDC140Q96MF4 KCNIP3-205ENST00000468529 985 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
CCDC140Q96MF4 CA15P1-201ENST00000481698 905 ntBASIC14.58□□□□□ -0.08
CCDC140Q96MF4 AC026412.1-201ENST00000507290 1033 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
CCDC140Q96MF4 SIVA1-207ENST00000556195 674 ntTSL 3 BASIC14.58□□□□□ -0.08
CCDC140Q96MF4 FITM1-202ENST00000559294 800 ntBASIC14.58□□□□□ -0.08
CCDC140Q96MF4 AC008763.3-201ENST00000597959 777 ntAPPRIS P1 TSL 4 BASIC14.58□□□□□ -0.08
CCDC140Q96MF4 AC008622.2-201ENST00000617006 1229 ntBASIC14.58□□□□□ -0.08
CCDC140Q96MF4 CROCCP2-205ENST00000639481 1296 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
CCDC140Q96MF4 SLC38A10-201ENST00000288439 2708 ntAPPRIS P3 TSL 1 (best) BASIC14.58□□□□□ -0.08
CCDC140Q96MF4 AC096719.1-201ENST00000510705 1874 ntTSL 5 BASIC14.58□□□□□ -0.08
CCDC140Q96MF4 NAF1-202ENST00000422287 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC14.58□□□□□ -0.08
CCDC140Q96MF4 HAUS4-218ENST00000555986 1626 ntTSL 5 BASIC14.58□□□□□ -0.08
CCDC140Q96MF4 ACADS-201ENST00000242592 1950 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
CCDC140Q96MF4 HIBADH-201ENST00000265395 1990 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
CCDC140Q96MF4 NCF1-201ENST00000289473 1396 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
CCDC140Q96MF4 C7orf49-202ENST00000424142 1738 ntTSL 2 BASIC14.58□□□□□ -0.08
CCDC140Q96MF4 TLE3-201ENST00000317509 5207 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
CCDC140Q96MF4 EDN3-204ENST00000371028 2397 ntAPPRIS P4 TSL 5 BASIC14.58□□□□□ -0.08
CCDC140Q96MF4 SLC35A2-217ENST00000635589 1424 ntTSL 2 BASIC14.58□□□□□ -0.08
CCDC140Q96MF4 SNAI3-AS1-205ENST00000568633 2096 ntBASIC14.57□□□□□ -0.08
CCDC140Q96MF4 DEF8-211ENST00000563795 1767 ntTSL 5 BASIC14.57□□□□□ -0.08
CCDC140Q96MF4 ZFP92-201ENST00000338647 6105 ntAPPRIS P1 TSL 5 BASIC14.57□□□□□ -0.08
CCDC140Q96MF4 TULP1-201ENST00000229771 2162 ntAPPRIS P2 TSL 1 (best) BASIC14.57□□□□□ -0.08
CCDC140Q96MF4 ATP6V1G2-205ENST00000303892 1588 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
CCDC140Q96MF4 AL050404.1-201ENST00000424566 802 ntTSL 2 BASIC14.57□□□□□ -0.08
CCDC140Q96MF4 CD209-209ENST00000601256 994 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
CCDC140Q96MF4 LRRC36-201ENST00000329956 2395 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
CCDC140Q96MF4 PPP2R5A-201ENST00000261461 3128 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
CCDC140Q96MF4 EFHC1-206ENST00000635760 2030 ntTSL 5 BASIC14.57□□□□□ -0.08
CCDC140Q96MF4 ZNF211-204ENST00000347302 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC14.57□□□□□ -0.08
CCDC140Q96MF4 ZNF302-214ENST00000613363 2893 ntAPPRIS ALT2 TSL 4 BASIC14.57□□□□□ -0.08
CCDC140Q96MF4 LINC00466-207ENST00000634725 1736 ntTSL 5 BASIC14.57□□□□□ -0.08
CCDC140Q96MF4 RENBP-202ENST00000393700 1388 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
CCDC140Q96MF4 SLC6A9-201ENST00000357730 2168 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
CCDC140Q96MF4 FAM213A-206ENST00000615554 2213 ntAPPRIS P1 TSL 5 BASIC14.57□□□□□ -0.08
Retrieved 100 of 98,524 protein–RNA pairs in 22.2 ms