Protein–RNA interactions for Protein: Q02388

COL7A1, Collagen alpha-1(VII) chain, humanhuman

Predictions only

Length 2,944 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1Q02388 DOC2A-201ENST00000350119 2071 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
COL7A1Q02388 JAKMIP1-208ENST00000637373 1362 ntTSL 5 BASIC13.49□□□□□ -0.25
COL7A1Q02388 MELTF-202ENST00000296351 1650 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
COL7A1Q02388 TSSC4-201ENST00000333256 1686 ntAPPRIS P3 TSL 1 (best) BASIC13.49□□□□□ -0.25
COL7A1Q02388 NTN5-201ENST00000270235 1836 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
COL7A1Q02388 TMEM91-209ENST00000539627 1843 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
COL7A1Q02388 PMPCA-203ENST00000399219 1987 ntTSL 2 BASIC13.49□□□□□ -0.25
COL7A1Q02388 DGUOK-201ENST00000264093 1144 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
COL7A1Q02388 RUFY1-201ENST00000319449 2646 ntAPPRIS P3 TSL 1 (best) BASIC13.49□□□□□ -0.25
COL7A1Q02388 DGUOK-202ENST00000348222 880 ntTSL 2 BASIC13.49□□□□□ -0.25
COL7A1Q02388 ROMO1-204ENST00000374078 498 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
COL7A1Q02388 YWHAZ-203ENST00000395951 964 ntAPPRIS P1 TSL 2 BASIC13.49□□□□□ -0.25
COL7A1Q02388 AL023284.2-201ENST00000405850 579 ntBASIC13.49□□□□□ -0.25
COL7A1Q02388 IMP4-203ENST00000409935 958 ntTSL 5 BASIC13.49□□□□□ -0.25
COL7A1Q02388 ZNF295-AS1-202ENST00000429739 783 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
COL7A1Q02388 LINC01534-202ENST00000433232 554 ntTSL 3 BASIC13.49□□□□□ -0.25
COL7A1Q02388 AC092159.3-201ENST00000439196 571 ntTSL 4 BASIC13.49□□□□□ -0.25
COL7A1Q02388 EZH2-208ENST00000483967 2466 ntAPPRIS ALT1 TSL 2 BASIC13.49□□□□□ -0.25
COL7A1Q02388 LINC00565-201ENST00000562710 2331 ntBASIC13.49□□□□□ -0.25
COL7A1Q02388 AC010240.3-201ENST00000607688 395 ntBASIC13.49□□□□□ -0.25
COL7A1Q02388 DGUOK-208ENST00000629438 1029 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
COL7A1Q02388 CD164L2-202ENST00000374027 1457 ntAPPRIS P3 TSL 1 (best) BASIC13.49□□□□□ -0.25
COL7A1Q02388 TFEB-211ENST00000420312 1996 ntTSL 5 BASIC13.48□□□□□ -0.25
COL7A1Q02388 LAMTOR5-201ENST00000256644 868 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
COL7A1Q02388 TEX30-206ENST00000376032 1165 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
COL7A1Q02388 MINOS1P3-201ENST00000457048 203 ntBASIC13.48□□□□□ -0.25
COL7A1Q02388 LAMTOR5-204ENST00000483260 694 ntTSL 2 BASIC13.48□□□□□ -0.25
COL7A1Q02388 AC007193.2-201ENST00000596807 472 ntTSL 3 BASIC13.48□□□□□ -0.25
COL7A1Q02388 LAMTOR5-206ENST00000602318 634 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
COL7A1Q02388 AC124864.1-201ENST00000623408 392 ntBASIC13.48□□□□□ -0.25
COL7A1Q02388 KMT5C-201ENST00000255613 2308 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
COL7A1Q02388 AC073314.1-201ENST00000568729 2216 ntBASIC13.48□□□□□ -0.25
COL7A1Q02388 GAS7-210ENST00000579158 1528 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
COL7A1Q02388 ARHGDIA-201ENST00000269321 1906 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
COL7A1Q02388 AC004982.2-201ENST00000609497 1578 ntTSL 2 BASIC13.48□□□□□ -0.25
COL7A1Q02388 AC007375.3-201ENST00000600936 2314 ntBASIC13.48□□□□□ -0.25
COL7A1Q02388 WDR34-201ENST00000372715 1755 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
COL7A1Q02388 SLC38A11-203ENST00000409149 1621 ntAPPRIS P2 TSL 2 BASIC13.48□□□□□ -0.25
COL7A1Q02388 CPNE7-202ENST00000319518 2409 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
COL7A1Q02388 TM2D1-201ENST00000294613 1250 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
COL7A1Q02388 DPY30-201ENST00000295066 631 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
COL7A1Q02388 DPY30-202ENST00000342166 708 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
COL7A1Q02388 TM2D1-204ENST00000371180 1248 ntTSL 5 BASIC13.48□□□□□ -0.25
COL7A1Q02388 TMEM128-202ENST00000382753 1221 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
COL7A1Q02388 LINC01413-201ENST00000564843 772 ntTSL 3 BASIC13.48□□□□□ -0.25
COL7A1Q02388 AL449423.1-201ENST00000578935 435 ntTSL 3 BASIC13.48□□□□□ -0.25
COL7A1Q02388 TM2D1-212ENST00000606498 969 ntAPPRIS P1 TSL 5 BASIC13.48□□□□□ -0.25
COL7A1Q02388 FAM197Y3-203ENST00000618346 717 ntBASIC13.48□□□□□ -0.25
COL7A1Q02388 MALAT1-215ENST00000619449 794 ntTSL 3 BASIC13.48□□□□□ -0.25
COL7A1Q02388 ILDR1-203ENST00000393631 1456 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
COL7A1Q02388 DNAJB5-201ENST00000312316 2391 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
COL7A1Q02388 ANKRD18DP-204ENST00000455355 1975 ntBASIC13.48□□□□□ -0.25
COL7A1Q02388 MTUS2-202ENST00000380808 1793 ntAPPRIS P3 TSL 1 (best) BASIC13.48□□□□□ -0.25
COL7A1Q02388 ADAP1-218ENST00000617043 1946 ntTSL 2 BASIC13.47□□□□□ -0.25
COL7A1Q02388 NAT6-204ENST00000443094 1464 ntAPPRIS ALT2 TSL 1 (best) BASIC13.47□□□□□ -0.25
COL7A1Q02388 IL6R-208ENST00000622330 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC13.47□□□□□ -0.25
COL7A1Q02388 UPF3AP3-201ENST00000420996 769 ntBASIC13.47□□□□□ -0.25
COL7A1Q02388 GPX1P2-201ENST00000429271 606 ntBASIC13.47□□□□□ -0.25
COL7A1Q02388 AC012640.2-201ENST00000561606 901 ntBASIC13.47□□□□□ -0.25
COL7A1Q02388 AC034105.1-201ENST00000563488 319 ntBASIC13.47□□□□□ -0.25
COL7A1Q02388 PAQR4-204ENST00000574988 869 ntTSL 2 BASIC13.47□□□□□ -0.25
COL7A1Q02388 PSMA6-216ENST00000627895 484 ntTSL 5 BASIC13.47□□□□□ -0.25
COL7A1Q02388 BIN1-207ENST00000357970 2497 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
COL7A1Q02388 POMGNT1-201ENST00000371984 2728 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
COL7A1Q02388 MSC-201ENST00000325509 2023 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
COL7A1Q02388 PYCR3-207ENST00000495276 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC13.47□□□□□ -0.25
COL7A1Q02388 PTDSS2-201ENST00000308020 2445 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
COL7A1Q02388 AP006284.1-201ENST00000527620 2210 ntTSL 2 BASIC13.47□□□□□ -0.25
COL7A1Q02388 ILDR2-203ENST00000469934 1950 ntAPPRIS ALT2 TSL 5 BASIC13.47□□□□□ -0.25
COL7A1Q02388 PAQR6-212ENST00000540423 1729 ntTSL 3 BASIC13.47□□□□□ -0.25
COL7A1Q02388 ACVR1B-205ENST00000541224 1791 ntTSL 2 BASIC13.47□□□□□ -0.25
COL7A1Q02388 CHTOP-204ENST00000368694 2096 ntAPPRIS P3 TSL 1 (best) BASIC13.47□□□□□ -0.25
COL7A1Q02388 LCK-214ENST00000619559 2099 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
COL7A1Q02388 DPF3-204ENST00000546183 1514 ntTSL 2 BASIC13.47□□□□□ -0.25
COL7A1Q02388 ELL3-201ENST00000319359 2352 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
COL7A1Q02388 PRSS27-201ENST00000302641 1130 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
COL7A1Q02388 C22orf39-203ENST00000399568 1005 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
COL7A1Q02388 DDT-203ENST00000403754 569 ntTSL 3 BASIC13.47□□□□□ -0.25
COL7A1Q02388 AL591424.1-201ENST00000442569 1213 ntBASIC13.47□□□□□ -0.25
COL7A1Q02388 AC008825.1-201ENST00000504398 452 ntTSL 3 BASIC13.47□□□□□ -0.25
COL7A1Q02388 GPR32P1-201ENST00000601788 811 ntBASIC13.47□□□□□ -0.25
COL7A1Q02388 RABAC1-210ENST00000601891 628 ntTSL 3 BASIC13.47□□□□□ -0.25
COL7A1Q02388 AL049840.3-201ENST00000602669 611 ntBASIC13.47□□□□□ -0.25
COL7A1Q02388 SMIM24-201ENST00000215531 1329 ntAPPRIS P2 TSL 1 (best) BASIC13.47□□□□□ -0.25
COL7A1Q02388 TMEM59L-201ENST00000262817 1613 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
COL7A1Q02388 FBRSL1-201ENST00000434748 5568 ntAPPRIS P2 TSL 1 (best) BASIC13.47□□□□□ -0.25
COL7A1Q02388 AC012615.6-201ENST00000593201 1697 ntTSL 2 BASIC13.47□□□□□ -0.25
COL7A1Q02388 MAMSTR-203ENST00000594582 1693 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
COL7A1Q02388 EEF1D-204ENST00000423316 2378 ntAPPRIS P4 TSL 5 BASIC13.47□□□□□ -0.25
COL7A1Q02388 THAP3-203ENST00000377627 2053 ntAPPRIS P3 TSL 2 BASIC13.47□□□□□ -0.25
COL7A1Q02388 SMPDL3A-203ENST00000539041 1755 ntTSL 2 BASIC13.47□□□□□ -0.25
COL7A1Q02388 TCP11-209ENST00000444780 1841 ntAPPRIS ALT2 TSL 2 BASIC13.47□□□□□ -0.25
COL7A1Q02388 TH-202ENST00000333684 1535 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
COL7A1Q02388 TDRD10-202ENST00000368482 2331 ntAPPRIS P3 TSL 1 (best) BASIC13.47□□□□□ -0.25
COL7A1Q02388 PF4-201ENST00000296029 604 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
COL7A1Q02388 AP000688.4-201ENST00000436303 446 ntTSL 3 BASIC13.46□□□□□ -0.25
COL7A1Q02388 AP001625.2-201ENST00000442605 575 ntTSL 2 BASIC13.46□□□□□ -0.25
COL7A1Q02388 VENTXP7-201ENST00000475503 772 ntBASIC13.46□□□□□ -0.25
COL7A1Q02388 ANAPC11-204ENST00000571024 668 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
COL7A1Q02388 ANAPC11-218ENST00000582222 523 ntTSL 2 BASIC13.46□□□□□ -0.25
Retrieved 100 of 98,524 protein–RNA pairs in 24.3 ms