Protein–RNA interactions for Protein: P55344

LIM2, Lens fiber membrane intrinsic protein, humanhuman

Predictions only

Length 173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIM2P55344 DBX1-201ENST00000524983 1380 ntAPPRIS P1 TSL 5 BASIC17.91■□□□□ 0.46
LIM2P55344 AC006333.2-201ENST00000607957 2099 ntBASIC17.91■□□□□ 0.46
LIM2P55344 APBB1-210ENST00000530885 1626 ntTSL 2 BASIC17.9■□□□□ 0.46
LIM2P55344 GRB10-205ENST00000401949 2627 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
LIM2P55344 KRT81-201ENST00000327741 1929 ntAPPRIS P2 TSL 1 (best) BASIC17.9■□□□□ 0.46
LIM2P55344 ZIC4-209ENST00000473123 1481 ntAPPRIS P1 TSL 2 BASIC17.9■□□□□ 0.46
LIM2P55344 HAUS4-217ENST00000555367 1454 ntTSL 5 BASIC17.9■□□□□ 0.46
LIM2P55344 NFATC4-220ENST00000555393 2235 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
LIM2P55344 RELB-201ENST00000221452 2294 ntAPPRIS P2 TSL 1 (best) BASIC17.9■□□□□ 0.46
LIM2P55344 CPEB2-202ENST00000345451 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC17.9■□□□□ 0.46
LIM2P55344 CAPS-201ENST00000452990 1789 ntTSL 5 BASIC17.9■□□□□ 0.46
LIM2P55344 AC139491.1-201ENST00000512675 1516 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
LIM2P55344 AHCYL1-203ENST00000393614 4313 ntTSL 2 BASIC17.9■□□□□ 0.46
LIM2P55344 MMP23A-201ENST00000234610 1017 ntBASIC17.9■□□□□ 0.46
LIM2P55344 ZFYVE1-202ENST00000394207 1183 ntTSL 2 BASIC17.9■□□□□ 0.46
LIM2P55344 C5orf49-202ENST00000509627 1020 ntAPPRIS ALT2 TSL 1 (best) BASIC17.9■□□□□ 0.46
LIM2P55344 AC008763.3-201ENST00000597959 777 ntAPPRIS P1 TSL 4 BASIC17.9■□□□□ 0.46
LIM2P55344 SPINK2-206ENST00000618802 608 ntTSL 3 BASIC17.9■□□□□ 0.46
LIM2P55344 TCP11-209ENST00000444780 1841 ntAPPRIS ALT2 TSL 2 BASIC17.9■□□□□ 0.46
LIM2P55344 GPR42-201ENST00000454971 1804 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
LIM2P55344 JAKMIP1-208ENST00000637373 1362 ntTSL 5 BASIC17.9■□□□□ 0.46
LIM2P55344 HOXB6-201ENST00000225648 1660 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
LIM2P55344 VBP1-201ENST00000286428 1686 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
LIM2P55344 RNF114-201ENST00000244061 2503 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
LIM2P55344 KRT8P3-201ENST00000519669 1449 ntBASIC17.89■□□□□ 0.46
LIM2P55344 PRRT1-202ENST00000375150 1726 ntTSL 1 (best) BASIC17.89■□□□□ 0.46
LIM2P55344 IFNLR1-202ENST00000327575 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC17.89■□□□□ 0.45
LIM2P55344 PDLIM3-202ENST00000284770 1766 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
LIM2P55344 FKBP8-206ENST00000596558 1756 ntAPPRIS ALT1 TSL 2 BASIC17.89■□□□□ 0.45
LIM2P55344 KRT15-203ENST00000393976 2394 ntAPPRIS P1 TSL 5 BASIC17.89■□□□□ 0.45
LIM2P55344 PER3-203ENST00000377541 1524 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
LIM2P55344 TMPRSS5-209ENST00000544634 1524 ntTSL 2 BASIC17.89■□□□□ 0.45
LIM2P55344 KRAS-201ENST00000256078 1119 ntAPPRIS P4 TSL 1 (best) BASIC17.89■□□□□ 0.45
LIM2P55344 TPPP3-201ENST00000290942 1116 ntAPPRIS P1 TSL 2 BASIC17.89■□□□□ 0.45
LIM2P55344 TPPP3-202ENST00000393957 1058 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
LIM2P55344 CACYBP-202ENST00000405362 1059 ntTSL 5 BASIC17.89■□□□□ 0.45
LIM2P55344 AL050404.1-201ENST00000424566 802 ntTSL 2 BASIC17.89■□□□□ 0.45
LIM2P55344 AL365295.1-202ENST00000456100 562 ntTSL 4 BASIC17.89■□□□□ 0.45
LIM2P55344 CA15P1-201ENST00000481698 905 ntBASIC17.89■□□□□ 0.45
LIM2P55344 ANK1-211ENST00000522231 1060 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
LIM2P55344 ANK1-212ENST00000522543 1160 ntTSL 2 BASIC17.89■□□□□ 0.45
LIM2P55344 ATG4B-226ENST00000625810 370 ntTSL 4 BASIC17.89■□□□□ 0.45
LIM2P55344 RPS27A-211ENST00000639844 606 ntTSL 5 BASIC17.89■□□□□ 0.45
LIM2P55344 GJB6-204ENST00000400066 1927 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
LIM2P55344 USP39-202ENST00000409025 1946 ntTSL 5 BASIC17.89■□□□□ 0.45
LIM2P55344 EVX1-202ENST00000496902 2955 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
LIM2P55344 FAM57A-201ENST00000301324 2013 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
LIM2P55344 CCDC88B-202ENST00000356786 4915 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
LIM2P55344 ACVR1B-205ENST00000541224 1791 ntTSL 2 BASIC17.89■□□□□ 0.45
LIM2P55344 KRT8P9-201ENST00000558927 1449 ntBASIC17.89■□□□□ 0.45
LIM2P55344 LDLRAD4-211ENST00000587757 2171 ntTSL 2 BASIC17.89■□□□□ 0.45
LIM2P55344 CABP7-201ENST00000216144 3259 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
LIM2P55344 P2RY6-203ENST00000393591 1829 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
LIM2P55344 KATNBL1P6-202ENST00000562413 1466 ntBASIC17.88■□□□□ 0.45
LIM2P55344 LRRC20-205ENST00000395010 2959 ntTSL 3 BASIC17.88■□□□□ 0.45
LIM2P55344 CD151-201ENST00000322008 1548 ntAPPRIS P2 TSL 1 (best) BASIC17.88■□□□□ 0.45
LIM2P55344 TNFRSF1A-213ENST00000540022 1527 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
LIM2P55344 STXBP2-203ENST00000441779 1914 ntTSL 2 BASIC17.88■□□□□ 0.45
LIM2P55344 C1orf198-201ENST00000366663 3858 ntAPPRIS P3 TSL 1 (best) BASIC17.88■□□□□ 0.45
LIM2P55344 NDRG2-227ENST00000554143 1980 ntAPPRIS ALT1 TSL 2 BASIC17.88■□□□□ 0.45
LIM2P55344 GOSR2-226ENST00000639287 2367 ntTSL 5 BASIC17.88■□□□□ 0.45
LIM2P55344 TNFRSF19-202ENST00000382258 1625 ntAPPRIS P4 TSL 1 (best) BASIC17.88■□□□□ 0.45
LIM2P55344 ADAM33-202ENST00000356518 3677 ntAPPRIS P3 TSL 1 (best) BASIC17.88■□□□□ 0.45
LIM2P55344 SYBU-232ENST00000533171 2498 ntAPPRIS ALT2 TSL 2 BASIC17.88■□□□□ 0.45
LIM2P55344 FOXP4-202ENST00000373057 3300 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
LIM2P55344 ACP1-205ENST00000407983 703 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
LIM2P55344 AL731557.1-201ENST00000425264 744 ntTSL 3 BASIC17.88■□□□□ 0.45
LIM2P55344 CT47A1-201ENST00000433030 1288 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
LIM2P55344 AL365259.1-203ENST00000451660 707 ntTSL 3 BASIC17.88■□□□□ 0.45
LIM2P55344 TAPBP-236ENST00000456592 817 ntTSL 5 BASIC17.88■□□□□ 0.45
LIM2P55344 TMEM185A-204ENST00000507237 903 ntTSL 2 BASIC17.88■□□□□ 0.45
LIM2P55344 AC098864.1-204ENST00000513752 805 ntTSL 4 BASIC17.88■□□□□ 0.45
LIM2P55344 MLF2-210ENST00000542154 838 ntAPPRIS P1 TSL 5 BASIC17.88■□□□□ 0.45
LIM2P55344 SMIM1-203ENST00000561886 491 ntTSL 2 BASIC17.88■□□□□ 0.45
LIM2P55344 COX20-203ENST00000411948 2631 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
LIM2P55344 WDR34-201ENST00000372715 1755 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
LIM2P55344 AK3-202ENST00000381809 2736 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
LIM2P55344 KMT2B-201ENST00000420124 8469 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
LIM2P55344 SLC35A2-217ENST00000635589 1424 ntTSL 2 BASIC17.88■□□□□ 0.45
LIM2P55344 C16orf59-210ENST00000569496 1911 ntAPPRIS ALT2 TSL 5 BASIC17.88■□□□□ 0.45
LIM2P55344 GALE-201ENST00000374497 1488 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
LIM2P55344 PRR5-ARHGAP8-201ENST00000352766 2043 ntAPPRIS P1 TSL 2 BASIC17.88■□□□□ 0.45
LIM2P55344 SRMS-201ENST00000217188 1516 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
LIM2P55344 KLHL17-201ENST00000338591 2560 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
LIM2P55344 TSR1-201ENST00000301364 5188 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
LIM2P55344 ADAP1-205ENST00000449296 2093 ntTSL 2 BASIC17.87■□□□□ 0.45
LIM2P55344 OBSL1-204ENST00000404537 5841 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
LIM2P55344 LINC01819-201ENST00000422351 2156 ntTSL 5 BASIC17.87■□□□□ 0.45
LIM2P55344 CASP16P-202ENST00000575497 2161 ntTSL 2 BASIC17.87■□□□□ 0.45
LIM2P55344 AGAP4-201ENST00000311652 2715 ntAPPRIS ALT2 TSL 1 (best) BASIC17.87■□□□□ 0.45
LIM2P55344 DNM1-206ENST00000475805 2710 ntAPPRIS ALT1 TSL 2 BASIC17.87■□□□□ 0.45
LIM2P55344 UAP1-204ENST00000367926 2294 ntAPPRIS P3 TSL 1 (best) BASIC17.87■□□□□ 0.45
LIM2P55344 ADGRA2-201ENST00000315215 6270 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
LIM2P55344 PARS2-201ENST00000371279 2347 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
LIM2P55344 FLT1-207ENST00000615840 6453 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
LIM2P55344 DMD-208ENST00000378680 1858 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
LIM2P55344 ESPN-205ENST00000461727 1869 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
LIM2P55344 FGFBP3-201ENST00000311575 2545 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
LIM2P55344 LGALS7B-201ENST00000314980 483 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
LIM2P55344 TIMM17B-201ENST00000376582 950 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Retrieved 100 of 98,524 protein–RNA pairs in 84.6 ms