Protein–RNA interactions for Protein: P51784

USP11, Ubiquitin carboxyl-terminal hydrolase 11, humanhuman

Predictions only

Length 963 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP11P51784 VLDLR-AS1-205ENST00000599229 1346 ntTSL 1 (best) BASIC21.3■■□□□ 1
USP11P51784 PCGF6-201ENST00000337211 1950 ntTSL 1 (best) BASIC21.3■■□□□ 1
USP11P51784 AC087289.5-201ENST00000586076 3175 ntBASIC21.3■■□□□ 1
USP11P51784 CCK-202ENST00000396169 1527 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
USP11P51784 AGAP2-AS1-201ENST00000542466 1500 ntTSL 1 (best) BASIC21.3■■□□□ 1
USP11P51784 NKX1-2-201ENST00000451024 3364 ntAPPRIS P1 TSL 5 BASIC21.3■■□□□ 1
USP11P51784 TRABD-203ENST00000395827 2172 ntAPPRIS P3 TSL 5 BASIC21.3■■□□□ 1
USP11P51784 AIRE-201ENST00000291582 2257 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
USP11P51784 PCSK6-214ENST00000611716 4409 ntAPPRIS P4 TSL 1 (best) BASIC21.3■■□□□ 1
USP11P51784 CCND3-204ENST00000414200 1724 ntTSL 2 BASIC21.3■■□□□ 1
USP11P51784 UBTF-203ENST00000393606 2683 ntTSL 1 (best) BASIC21.3■■□□□ 1
USP11P51784 FAM210CP-201ENST00000445714 574 ntBASIC21.3■■□□□ 1
USP11P51784 CCNJL-205ENST00000519673 940 ntTSL 2 BASIC21.3■■□□□ 1
USP11P51784 TK2-213ENST00000563369 882 ntTSL 5 BASIC21.3■■□□□ 1
USP11P51784 NUDT17-201ENST00000334513 1473 ntAPPRIS P1 TSL 5 BASIC21.3■■□□□ 1
USP11P51784 OGFOD2-205ENST00000454694 1488 ntTSL 1 (best) BASIC21.3■■□□□ 1
USP11P51784 MFSD1-201ENST00000264266 1594 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
USP11P51784 CDK4-202ENST00000312990 1650 ntTSL 1 (best) BASIC21.3■■□□□ 1
USP11P51784 CASP9-210ENST00000546424 4463 ntAPPRIS ALT2 TSL 5 BASIC21.3■■□□□ 1
USP11P51784 ACTG1-201ENST00000331925 1994 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
USP11P51784 ACD-202ENST00000393919 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC21.3■■□□□ 1
USP11P51784 ARHGAP5-203ENST00000396582 5786 ntTSL 1 (best) BASIC21.3■■□□□ 1
USP11P51784 TMEM235-202ENST00000421688 2490 ntAPPRIS P1 TSL 5 BASIC21.3■■□□□ 1
USP11P51784 RTBDN-201ENST00000322912 1328 ntAPPRIS P3 TSL 1 (best) BASIC21.29■■□□□ 1
USP11P51784 ARID3C-201ENST00000378909 1411 ntAPPRIS P1 TSL 2 BASIC21.29■■□□□ 1
USP11P51784 AC007743.1-203ENST00000447423 1623 ntTSL 2 BASIC21.29■■□□□ 1
USP11P51784 C7orf49-202ENST00000424142 1738 ntTSL 2 BASIC21.29■■□□□ 1
USP11P51784 RNF165-205ENST00000588679 2904 ntBASIC21.29■■□□□ 1
USP11P51784 ZNF398-202ENST00000475153 2860 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
USP11P51784 NFKBIZ-201ENST00000326151 2058 ntTSL 2 BASIC21.29■■□□□ 1
USP11P51784 BX323043.1-201ENST00000641006 1765 ntBASIC21.29■■□□□ 1
USP11P51784 NFYC-AS1-201ENST00000606277 1687 ntBASIC21.29■■□□□ 1
USP11P51784 ATP6V1G2-205ENST00000303892 1588 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
USP11P51784 CD164L2-202ENST00000374027 1457 ntAPPRIS P3 TSL 1 (best) BASIC21.29■■□□□ 1
USP11P51784 GPR6-201ENST00000275169 1089 ntAPPRIS P1 BASIC21.29■■□□□ 1
USP11P51784 ENSA-205ENST00000361532 792 ntTSL 2 BASIC21.29■■□□□ 1
USP11P51784 MIR564-202ENST00000385049 94 ntBASIC21.29■■□□□ 1
USP11P51784 AC134772.1-201ENST00000438872 885 ntTSL 3 BASIC21.29■■□□□ 1
USP11P51784 BX664615.1-201ENST00000443558 458 ntBASIC21.29■■□□□ 1
USP11P51784 LY6E-214ENST00000522971 857 ntAPPRIS P2 TSL 2 BASIC21.29■■□□□ 1
USP11P51784 CFL2-205ENST00000555765 632 ntTSL 2 BASIC21.29■■□□□ 1
USP11P51784 NEK4P2-201ENST00000580004 1012 ntBASIC21.29■■□□□ 1
USP11P51784 ATP5D-207ENST00000591660 637 ntAPPRIS P1 TSL 3 BASIC21.29■■□□□ 1
USP11P51784 CALM3-208ENST00000596362 1203 ntAPPRIS P1 TSL 2 BASIC21.29■■□□□ 1
USP11P51784 SCPEP1-216ENST00000631024 444 ntTSL 5 BASIC21.29■■□□□ 1
USP11P51784 RNF187-203ENST00000639044 708 ntAPPRIS P2 TSL 1 (best) BASIC21.29■■□□□ 1
USP11P51784 PRSS36-202ENST00000418068 2446 ntTSL 2 BASIC21.29■■□□□ 1
USP11P51784 RAB7A-201ENST00000265062 2244 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
USP11P51784 RPP25-201ENST00000322177 3049 ntAPPRIS P1 BASIC21.29■■□□□ 1
USP11P51784 FAM213B-204ENST00000419916 2749 ntAPPRIS P3 TSL 1 (best) BASIC21.28■■□□□ 1
USP11P51784 KMT5B-201ENST00000304363 5837 ntAPPRIS P1 TSL 5 BASIC21.28■■□□□ 1
USP11P51784 TXNRD2-203ENST00000400519 3155 ntAPPRIS ALT2 TSL 1 (best) BASIC21.28■■□□□ 1
USP11P51784 SAMD11-211ENST00000616125 2230 ntAPPRIS ALT2 TSL 5 BASIC21.28■■□□□ 1
USP11P51784 DMRT2-201ENST00000259622 2459 ntTSL 2 BASIC21.28■■□□□ 1
USP11P51784 ZNF420-201ENST00000304239 1945 ntTSL 2 BASIC21.28■■□□□ 1
USP11P51784 GTPBP3-222ENST00000600625 2493 ntTSL 1 (best) BASIC21.28■■□□□ 1
USP11P51784 GDPD1-201ENST00000284116 1821 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
USP11P51784 LINC01063-201ENST00000441644 348 ntTSL 3 BASIC21.28■■□□□ 1
USP11P51784 AC007563.2-201ENST00000447289 552 ntTSL 5 BASIC21.28■■□□□ 1
USP11P51784 AC104596.1-202ENST00000507486 759 ntTSL 3 BASIC21.28■■□□□ 1
USP11P51784 CDKN3-209ENST00000556102 938 ntTSL 5 BASIC21.28■■□□□ 1
USP11P51784 NT5C-210ENST00000582160 860 ntTSL 2 BASIC21.28■■□□□ 1
USP11P51784 LPCAT3-201ENST00000261407 2268 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
USP11P51784 IDH3G-202ENST00000370092 1712 ntTSL 5 BASIC21.28■■□□□ 1
USP11P51784 RSAD1-201ENST00000258955 2528 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
USP11P51784 KRT14-201ENST00000167586 1662 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
USP11P51784 AC036111.1-201ENST00000533973 1582 ntBASIC21.27■■□□□ 1
USP11P51784 NAGPA-AS1-202ENST00000632058 2265 ntTSL 2 BASIC21.27■■□□□ 1
USP11P51784 RASSF7-205ENST00000454668 1450 ntAPPRIS ALT2 TSL 1 (best) BASIC21.27■■□□□ 1
USP11P51784 SEMA3D-202ENST00000444867 1605 ntTSL 1 (best) BASIC21.27■■□□□ 1
USP11P51784 BUD23-201ENST00000265758 1230 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
USP11P51784 HSD11B1L-205ENST00000422535 730 ntTSL 1 (best) BASIC21.27■■□□□ 1
USP11P51784 MUC1-212ENST00000457295 1161 ntAPPRIS ALT2 TSL 2 BASIC21.27■■□□□ 1
USP11P51784 RABAC1-210ENST00000601891 628 ntTSL 3 BASIC21.27■■□□□ 1
USP11P51784 TPSB2-201ENST00000606293 1165 ntAPPRIS ALT2 TSL 1 (best) BASIC21.27■■□□□ 1
USP11P51784 AC009477.2-201ENST00000635976 171 ntAPPRIS P1 BASIC21.27■■□□□ 1
USP11P51784 MTMR9LP-203ENST00000426597 1545 ntBASIC21.27■■□□□ 1
USP11P51784 AP001922.1-201ENST00000499390 1504 ntTSL 1 (best) BASIC21.27■■□□□ 1
USP11P51784 INSR-201ENST00000302850 4721 ntAPPRIS P3 TSL 1 (best) BASIC21.27■■□□□ 1
USP11P51784 SHF-201ENST00000290894 2500 ntAPPRIS P3 TSL 2 BASIC21.27■■□□□ 1
USP11P51784 AP003356.1-202ENST00000517910 2770 ntTSL 2 BASIC21.27■■□□□ 1
USP11P51784 SYT8-202ENST00000381968 1424 ntAPPRIS P2 TSL 5 BASIC21.27■■□□□ 1
USP11P51784 TBL1Y-203ENST00000383032 2407 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
USP11P51784 ZAR1L-202ENST00000533490 1564 ntAPPRIS P1 TSL 5 BASIC21.27■□□□□ 0.99
USP11P51784 EIF5A-204ENST00000416016 1336 ntAPPRIS P1 TSL 1 (best) BASIC21.27■□□□□ 0.99
USP11P51784 GAS6-201ENST00000327773 2490 ntAPPRIS P1 TSL 1 (best) BASIC21.27■□□□□ 0.99
USP11P51784 AIPL1-209ENST00000575265 2111 ntAPPRIS ALT2 TSL 1 (best) BASIC21.26■□□□□ 0.99
USP11P51784 DMWD-201ENST00000270223 3305 ntAPPRIS P2 TSL 1 (best) BASIC21.26■□□□□ 0.99
USP11P51784 PON1-201ENST00000222381 2568 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
USP11P51784 C22orf39-205ENST00000542103 1523 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
USP11P51784 RNF212-202ENST00000382968 2335 ntAPPRIS P3 TSL 1 (best) BASIC21.26■□□□□ 0.99
USP11P51784 AC138696.1-201ENST00000522452 2897 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
USP11P51784 COL15A1-205ENST00000610452 5422 ntAPPRIS ALT2 TSL 5 BASIC21.26■□□□□ 0.99
USP11P51784 METTL5-201ENST00000260953 1010 ntAPPRIS P2 TSL 1 (best) BASIC21.26■□□□□ 0.99
USP11P51784 NDUFA12-201ENST00000327772 635 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
USP11P51784 AC093620.1-201ENST00000342963 583 ntTSL 3 BASIC21.26■□□□□ 0.99
USP11P51784 BEX3-204ENST00000372645 913 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
USP11P51784 ROMO1-202ENST00000374072 350 ntTSL 5 BASIC21.26■□□□□ 0.99
USP11P51784 MLLT10-205ENST00000377100 1136 ntTSL 2 BASIC21.26■□□□□ 0.99
USP11P51784 LINC01381-201ENST00000431650 466 ntTSL 3 BASIC21.26■□□□□ 0.99
Retrieved 100 of 98,524 protein–RNA pairs in 35.9 ms