Protein–RNA interactions for Protein: P48065

SLC6A12, Sodium- and chloride-dependent betaine transporter, humanhuman

Predictions only

Length 614 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC6A12P48065 METRN-204ENST00000568223 3325 ntAPPRIS P2 TSL 1 (best) BASIC18.21■□□□□ 0.51
SLC6A12P48065 RNF170-205ENST00000526349 1338 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
SLC6A12P48065 GLYCTK-202ENST00000436784 1982 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.5
SLC6A12P48065 SH3BP1-201ENST00000357436 2852 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
SLC6A12P48065 GALE-201ENST00000374497 1488 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
SLC6A12P48065 IGFALS-202ENST00000415638 2136 ntTSL 2 BASIC18.2■□□□□ 0.5
SLC6A12P48065 AL365232.1-201ENST00000423730 1636 ntAPPRIS P1 TSL 5 BASIC18.2■□□□□ 0.5
SLC6A12P48065 ANKS3-202ENST00000446014 2265 ntTSL 5 BASIC18.2■□□□□ 0.5
SLC6A12P48065 USP36-203ENST00000542802 6063 ntAPPRIS P2 TSL 1 (best) BASIC18.2■□□□□ 0.5
SLC6A12P48065 DBX1-201ENST00000524983 1380 ntAPPRIS P1 TSL 5 BASIC18.2■□□□□ 0.5
SLC6A12P48065 AVL9-209ENST00000640103 1367 ntTSL 5 BASIC18.2■□□□□ 0.5
SLC6A12P48065 NPEPL1-203ENST00000525817 1780 ntTSL 2 BASIC18.2■□□□□ 0.5
SLC6A12P48065 PRR5-201ENST00000006251 1767 ntTSL 2 BASIC18.2■□□□□ 0.5
SLC6A12P48065 ZBTB8A-201ENST00000316459 1943 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
SLC6A12P48065 EMC6-201ENST00000248378 653 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
SLC6A12P48065 NDUFS6-201ENST00000274137 1082 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
SLC6A12P48065 TPPP3-201ENST00000290942 1116 ntAPPRIS P1 TSL 2 BASIC18.2■□□□□ 0.5
SLC6A12P48065 TMEM240-201ENST00000378733 718 ntAPPRIS P1 TSL 2 BASIC18.2■□□□□ 0.5
SLC6A12P48065 TPPP3-202ENST00000393957 1058 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
SLC6A12P48065 CT47A1-201ENST00000433030 1288 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
SLC6A12P48065 RBM17P1-201ENST00000453646 1190 ntBASIC18.2■□□□□ 0.5
SLC6A12P48065 DBNL-214ENST00000456905 1241 ntTSL 2 BASIC18.2■□□□□ 0.5
SLC6A12P48065 DHDH-203ENST00000522614 776 ntTSL 5 BASIC18.2■□□□□ 0.5
SLC6A12P48065 TGIF1-219ENST00000551541 990 ntTSL 2 BASIC18.2■□□□□ 0.5
SLC6A12P48065 AC005943.1-201ENST00000585937 1002 ntAPPRIS P1 TSL 3 BASIC18.2■□□□□ 0.5
SLC6A12P48065 TNNT1-208ENST00000587465 1065 ntAPPRIS ALT2 TSL 5 BASIC18.2■□□□□ 0.5
SLC6A12P48065 GRAMD4P8-201ENST00000605465 1115 ntBASIC18.2■□□□□ 0.5
SLC6A12P48065 AC016737.2-201ENST00000609273 358 ntTSL 3 BASIC18.2■□□□□ 0.5
SLC6A12P48065 IGFBP4-201ENST00000269593 2200 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
SLC6A12P48065 OGG1-203ENST00000302036 2220 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
SLC6A12P48065 TNKS2-201ENST00000371627 6157 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
SLC6A12P48065 AL445686.2-201ENST00000577528 1445 ntTSL 3 BASIC18.2■□□□□ 0.5
SLC6A12P48065 TMEM129-202ENST00000382936 2810 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
SLC6A12P48065 TMEM250-201ENST00000418388 2823 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
SLC6A12P48065 CYR61-201ENST00000451137 2290 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
SLC6A12P48065 CLN3-204ENST00000357857 1720 ntTSL 2 BASIC18.2■□□□□ 0.5
SLC6A12P48065 RAX2-201ENST00000555633 2414 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
SLC6A12P48065 MIB2-231ENST00000518681 3116 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
SLC6A12P48065 NPR3-204ENST00000434067 2715 ntTSL 5 BASIC18.2■□□□□ 0.5
SLC6A12P48065 ZNF302-214ENST00000613363 2893 ntAPPRIS ALT2 TSL 4 BASIC18.2■□□□□ 0.5
SLC6A12P48065 ZNF655-202ENST00000320583 1601 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
SLC6A12P48065 TRIM63-201ENST00000374272 1770 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
SLC6A12P48065 NUMBL-202ENST00000540131 1931 ntAPPRIS ALT2 TSL 2 BASIC18.19■□□□□ 0.5
SLC6A12P48065 SNAP47-201ENST00000315781 2367 ntAPPRIS P3 TSL 1 (best) BASIC18.19■□□□□ 0.5
SLC6A12P48065 CITED2-201ENST00000367651 2354 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
SLC6A12P48065 FMR1-207ENST00000439526 3699 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
SLC6A12P48065 CXorf40A-208ENST00000434353 1524 ntAPPRIS ALT1 TSL 5 BASIC18.19■□□□□ 0.5
SLC6A12P48065 SPSB1-201ENST00000328089 3120 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
SLC6A12P48065 RASGRP1-201ENST00000310803 5023 ntAPPRIS P2 TSL 1 (best) BASIC18.19■□□□□ 0.5
SLC6A12P48065 RASGRP1-204ENST00000539159 5021 ntAPPRIS ALT1 TSL 5 BASIC18.19■□□□□ 0.5
SLC6A12P48065 AL109659.2-201ENST00000606809 1674 ntBASIC18.19■□□□□ 0.5
SLC6A12P48065 CTNND2-201ENST00000304623 5481 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
SLC6A12P48065 AL357033.4-201ENST00000617703 1807 ntBASIC18.19■□□□□ 0.5
SLC6A12P48065 AC005082.1-201ENST00000413042 2259 ntBASIC18.19■□□□□ 0.5
SLC6A12P48065 FA2H-201ENST00000219368 2424 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
SLC6A12P48065 AC009113.1-201ENST00000570267 2443 ntBASIC18.19■□□□□ 0.5
SLC6A12P48065 ANKRD10-202ENST00000310847 1193 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
SLC6A12P48065 TRIM61-201ENST00000329314 1582 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
SLC6A12P48065 ASIC3-202ENST00000349064 1895 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
SLC6A12P48065 ICA1-206ENST00000402384 2458 ntAPPRIS P3 TSL 2 BASIC18.19■□□□□ 0.5
SLC6A12P48065 CRYGFP-201ENST00000418459 633 ntBASIC18.19■□□□□ 0.5
SLC6A12P48065 TMEM263-208ENST00000551489 621 ntTSL 4 BASIC18.19■□□□□ 0.5
SLC6A12P48065 FAM98C-205ENST00000588262 826 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
SLC6A12P48065 AC018755.2-202ENST00000429354 1926 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
SLC6A12P48065 MTERF2-202ENST00000392830 1763 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
SLC6A12P48065 TMEM104-202ENST00000417024 1781 ntTSL 2 BASIC18.19■□□□□ 0.5
SLC6A12P48065 GAS7-205ENST00000542249 1799 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
SLC6A12P48065 CAMK4-210ENST00000512453 1640 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
SLC6A12P48065 APBB1-210ENST00000530885 1626 ntTSL 2 BASIC18.19■□□□□ 0.5
SLC6A12P48065 KRT13-208ENST00000587544 1456 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
SLC6A12P48065 MYEOV-201ENST00000308946 2287 ntAPPRIS P3 TSL 1 (best) BASIC18.19■□□□□ 0.5
SLC6A12P48065 GAL3ST4-204ENST00000423751 1695 ntTSL 3 BASIC18.18■□□□□ 0.5
SLC6A12P48065 SNX4-201ENST00000251775 2513 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
SLC6A12P48065 KRT24-201ENST00000264651 1881 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
SLC6A12P48065 AC116565.2-201ENST00000637674 1854 ntTSL 2 BASIC18.18■□□□□ 0.5
SLC6A12P48065 GLS-201ENST00000320717 4834 ntAPPRIS P3 TSL 1 (best) BASIC18.18■□□□□ 0.5
SLC6A12P48065 SHISA5-220ENST00000619810 2385 ntTSL 2 BASIC18.18■□□□□ 0.5
SLC6A12P48065 ST3GAL4-203ENST00000392669 1724 ntAPPRIS ALT1 TSL 1 (best) BASIC18.18■□□□□ 0.5
SLC6A12P48065 ZNF692-204ENST00000451251 2065 ntAPPRIS ALT2 TSL 2 BASIC18.18■□□□□ 0.5
SLC6A12P48065 TRPC1-203ENST00000476941 3061 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
SLC6A12P48065 RNF165-205ENST00000588679 2904 ntBASIC18.18■□□□□ 0.5
SLC6A12P48065 TWIST2-202ENST00000612363 1404 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
SLC6A12P48065 STX6-204ENST00000542060 4809 ntTSL 2 BASIC18.18■□□□□ 0.5
SLC6A12P48065 HBA1-201ENST00000320868 577 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
SLC6A12P48065 PRR31-201ENST00000371629 978 ntTSL 2 BASIC18.18■□□□□ 0.5
SLC6A12P48065 TIMM17B-201ENST00000376582 950 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
SLC6A12P48065 HDAC11-203ENST00000402271 1018 ntTSL 3 BASIC18.18■□□□□ 0.5
SLC6A12P48065 LINC00620-201ENST00000419618 996 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
SLC6A12P48065 AL445645.1-201ENST00000451318 1019 ntTSL 2 BASIC18.18■□□□□ 0.5
SLC6A12P48065 SNORA78-201ENST00000459373 127 ntBASIC18.18■□□□□ 0.5
SLC6A12P48065 PHF11-218ENST00000496623 1173 ntAPPRIS ALT2 TSL 2 BASIC18.18■□□□□ 0.5
SLC6A12P48065 AP005263.1-201ENST00000579126 914 ntTSL 2 BASIC18.18■□□□□ 0.5
SLC6A12P48065 CYGB-204ENST00000589342 815 ntTSL 3 BASIC18.18■□□□□ 0.5
SLC6A12P48065 ADORA1-208ENST00000618295 862 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
SLC6A12P48065 RUBCN-206ENST00000449205 1603 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
SLC6A12P48065 CPSF3-201ENST00000238112 2345 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
SLC6A12P48065 ZIC4-209ENST00000473123 1481 ntAPPRIS P1 TSL 2 BASIC18.18■□□□□ 0.5
SLC6A12P48065 KLHL40-201ENST00000287777 2517 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
SLC6A12P48065 UVSSA-207ENST00000511216 2927 ntAPPRIS P2 TSL 1 (best) BASIC18.18■□□□□ 0.5
SLC6A12P48065 TFAP4-201ENST00000204517 2215 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 36.5 ms