Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 DUSP23-203ENST00000368109 729 ntAPPRIS P1 TSL 2 BASIC17.74■□□□□ 0.43
SOX3P41225 C9orf129-201ENST00000375419 1154 ntAPPRIS P1 TSL 5 BASIC17.74■□□□□ 0.43
SOX3P41225 CACYBP-202ENST00000405362 1059 ntTSL 5 BASIC17.74■□□□□ 0.43
SOX3P41225 CRYGFP-201ENST00000418459 633 ntBASIC17.74■□□□□ 0.43
SOX3P41225 AC003982.1-201ENST00000477404 484 ntTSL 2 BASIC17.74■□□□□ 0.43
SOX3P41225 LINC01184-202ENST00000501173 949 ntTSL 5 BASIC17.74■□□□□ 0.43
SOX3P41225 ADGRD1-AS1-202ENST00000542980 1277 ntTSL 4 BASIC17.74■□□□□ 0.43
SOX3P41225 TARBP2-220ENST00000552857 916 ntTSL 5 BASIC17.74■□□□□ 0.43
SOX3P41225 AC103746.1-201ENST00000617440 1133 ntTSL 3 BASIC17.74■□□□□ 0.43
SOX3P41225 DBNL-217ENST00000468694 2068 ntAPPRIS ALT2 TSL 2 BASIC17.74■□□□□ 0.43
SOX3P41225 ZNF815P-204ENST00000434898 1737 ntBASIC17.74■□□□□ 0.43
SOX3P41225 ABHD14A-ACY1-202ENST00000463937 1705 ntAPPRIS ALT2 TSL 5 BASIC17.74■□□□□ 0.43
SOX3P41225 RAP1GAP-204ENST00000374761 3318 ntTSL 5 BASIC17.74■□□□□ 0.43
SOX3P41225 PARP15-202ENST00000464300 2156 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
SOX3P41225 FN3KRP-201ENST00000269373 1849 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
SOX3P41225 PRKAR2A-206ENST00000454963 1849 ntAPPRIS P1 TSL 2 BASIC17.74■□□□□ 0.43
SOX3P41225 GTF2IP4-202ENST00000544802 3609 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
SOX3P41225 EEF1A2-201ENST00000217182 2006 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
SOX3P41225 DNLZ-202ENST00000371739 2934 ntTSL 5 BASIC17.74■□□□□ 0.43
SOX3P41225 ASMTL-201ENST00000381317 2027 ntAPPRIS P3 TSL 1 (best) BASIC17.74■□□□□ 0.43
SOX3P41225 ASMTL-202ENST00000381333 2035 ntAPPRIS ALT2 TSL 2 BASIC17.74■□□□□ 0.43
SOX3P41225 MMP28-204ENST00000615136 2033 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
SOX3P41225 PGAP3-206ENST00000579146 2220 ntTSL 2 BASIC17.74■□□□□ 0.43
SOX3P41225 CACTIN-201ENST00000221899 2797 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
SOX3P41225 C6orf223-202ENST00000439969 2757 ntTSL 2 BASIC17.74■□□□□ 0.43
SOX3P41225 RREB1-203ENST00000379933 5826 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
SOX3P41225 NFKBIL1-201ENST00000376145 1401 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
SOX3P41225 TMSB4X-203ENST00000380636 1702 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
SOX3P41225 CWH43-201ENST00000226432 2472 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
SOX3P41225 SLC22A17-204ENST00000397267 2455 ntAPPRIS P4 TSL 5 BASIC17.73■□□□□ 0.43
SOX3P41225 CFAP46-201ENST00000368585 1825 ntAPPRIS ALT2 TSL 2 BASIC17.73■□□□□ 0.43
SOX3P41225 ITGB5-201ENST00000296181 4372 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
SOX3P41225 DOLPP1-203ENST00000406974 2037 ntTSL 2 BASIC17.73■□□□□ 0.43
SOX3P41225 NDUFS6-201ENST00000274137 1082 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
SOX3P41225 ANK1-206ENST00000348036 622 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
SOX3P41225 PMVK-201ENST00000368467 1280 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
SOX3P41225 DLEU2-203ENST00000425586 1267 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
SOX3P41225 AC009487.1-202ENST00000437683 402 ntTSL 2 BASIC17.73■□□□□ 0.43
SOX3P41225 KCNMA1-220ENST00000481070 896 ntTSL 2 BASIC17.73■□□□□ 0.43
SOX3P41225 FDX2-206ENST00000492239 773 ntTSL 2 BASIC17.73■□□□□ 0.43
SOX3P41225 FMR1-AS1_2.1-201ENST00000613724 127 ntBASIC17.73■□□□□ 0.43
SOX3P41225 TSC22D4-202ENST00000393991 1469 ntTSL 2 BASIC17.73■□□□□ 0.43
SOX3P41225 PTAR1-205ENST00000472967 1689 ntTSL 2 BASIC17.73■□□□□ 0.43
SOX3P41225 TMEM235-203ENST00000550981 1786 ntTSL 2 BASIC17.73■□□□□ 0.43
SOX3P41225 AC104417.2-201ENST00000562989 1793 ntBASIC17.73■□□□□ 0.43
SOX3P41225 CARMIL2-201ENST00000334583 4687 ntAPPRIS P3 TSL 1 (best) BASIC17.73■□□□□ 0.43
SOX3P41225 EMX2-203ENST00000553456 2897 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
SOX3P41225 PKN1-201ENST00000242783 3069 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
SOX3P41225 KIF16B-206ENST00000636835 5109 ntAPPRIS ALT2 TSL 1 (best) BASIC17.73■□□□□ 0.43
SOX3P41225 KRT8P41-201ENST00000533985 1514 ntBASIC17.72■□□□□ 0.43
SOX3P41225 C11orf49-201ENST00000278460 1645 ntAPPRIS P3 TSL 1 (best) BASIC17.72■□□□□ 0.43
SOX3P41225 TXNRD3-205ENST00000640797 1824 ntAPPRIS ALT2 TSL 2 BASIC17.72■□□□□ 0.43
SOX3P41225 ACHE-205ENST00000419336 1906 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
SOX3P41225 CCDC17-202ENST00000421127 2216 ntAPPRIS ALT2 TSL 2 BASIC17.72■□□□□ 0.43
SOX3P41225 FAM90A1-201ENST00000307435 2342 ntAPPRIS P1 TSL 2 BASIC17.72■□□□□ 0.43
SOX3P41225 LONP1-215ENST00000593119 2918 ntTSL 2 BASIC17.72■□□□□ 0.43
SOX3P41225 ENOPH1-203ENST00000509635 1874 ntTSL 3 BASIC17.72■□□□□ 0.43
SOX3P41225 SLC25A39-202ENST00000377095 1565 ntAPPRIS ALT1 TSL 1 (best) BASIC17.72■□□□□ 0.43
SOX3P41225 CYP2D8P-201ENST00000433633 1490 ntBASIC17.72■□□□□ 0.43
SOX3P41225 NCF1-201ENST00000289473 1396 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
SOX3P41225 GLRB-205ENST00000512619 728 ntTSL 3 BASIC17.72■□□□□ 0.43
SOX3P41225 NCAM1-AS1-201ENST00000526229 1081 ntTSL 2 BASIC17.72■□□□□ 0.43
SOX3P41225 NAPSB-206ENST00000562112 1266 ntBASIC17.72■□□□□ 0.43
SOX3P41225 AP005242.2-201ENST00000580065 1175 ntBASIC17.72■□□□□ 0.43
SOX3P41225 AL445433.2-201ENST00000425113 2544 ntTSL 2 BASIC17.72■□□□□ 0.43
SOX3P41225 ZNF274-212ENST00000617501 2538 ntAPPRIS P4 TSL 1 (best) BASIC17.72■□□□□ 0.43
SOX3P41225 LINC01356-201ENST00000401018 1819 ntTSL 2 BASIC17.72■□□□□ 0.43
SOX3P41225 RPS6KB2-201ENST00000312629 1733 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
SOX3P41225 NOS1AP-206ENST00000530878 2894 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
SOX3P41225 TRMT2A-203ENST00000404751 2498 ntAPPRIS ALT2 TSL 2 BASIC17.72■□□□□ 0.43
SOX3P41225 C6orf89-203ENST00000373685 1400 ntAPPRIS ALT2 TSL 5 BASIC17.72■□□□□ 0.43
SOX3P41225 CUTC-202ENST00000370476 1346 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
SOX3P41225 HSPB8-201ENST00000281938 2152 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
SOX3P41225 LAG3-201ENST00000203629 1974 ntAPPRIS P2 TSL 1 (best) BASIC17.71■□□□□ 0.43
SOX3P41225 ACTL6A-201ENST00000392662 1899 ntTSL 2 BASIC17.71■□□□□ 0.43
SOX3P41225 MYH7B-201ENST00000262873 6293 ntAPPRIS P2 TSL 1 (best) BASIC17.71■□□□□ 0.43
SOX3P41225 OGFOD2-201ENST00000228922 1780 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
SOX3P41225 FAM69B-201ENST00000371691 2410 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
SOX3P41225 ANKRD29-201ENST00000322980 1658 ntTSL 2 BASIC17.71■□□□□ 0.43
SOX3P41225 C21orf91-203ENST00000400559 1593 ntAPPRIS ALT1 TSL 5 BASIC17.71■□□□□ 0.43
SOX3P41225 LRRC4B-202ENST00000599957 3019 ntAPPRIS P1 TSL 3 BASIC17.71■□□□□ 0.43
SOX3P41225 CAPN10-203ENST00000352879 862 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
SOX3P41225 AL731557.1-201ENST00000425264 744 ntTSL 3 BASIC17.71■□□□□ 0.43
SOX3P41225 AL954642.1-201ENST00000428088 538 ntTSL 3 BASIC17.71■□□□□ 0.43
SOX3P41225 FBXO32-202ENST00000443022 1227 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
SOX3P41225 TAPBP-236ENST00000456592 817 ntTSL 5 BASIC17.71■□□□□ 0.43
SOX3P41225 ZNF667-AS1-206ENST00000591797 535 ntTSL 5 BASIC17.71■□□□□ 0.43
SOX3P41225 CLDND2-203ENST00000601435 575 ntAPPRIS P1 TSL 3 BASIC17.71■□□□□ 0.43
SOX3P41225 OAZ1-211ENST00000602676 1148 ntAPPRIS P3 TSL 5 BASIC17.71■□□□□ 0.43
SOX3P41225 AC012306.2-201ENST00000609350 630 ntBASIC17.71■□□□□ 0.43
SOX3P41225 RPS27A-211ENST00000639844 606 ntTSL 5 BASIC17.71■□□□□ 0.43
SOX3P41225 AC097493.4-201ENST00000641197 219 ntBASIC17.71■□□□□ 0.43
SOX3P41225 MYEOV-201ENST00000308946 2287 ntAPPRIS P3 TSL 1 (best) BASIC17.71■□□□□ 0.43
SOX3P41225 ETV4-204ENST00000545089 1628 ntTSL 2 BASIC17.71■□□□□ 0.43
SOX3P41225 RAB4A-201ENST00000366690 2966 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
SOX3P41225 OSTM1-201ENST00000193322 4467 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
SOX3P41225 NOMO2-201ENST00000330537 4352 ntAPPRIS ALT2 TSL 5 BASIC17.71■□□□□ 0.43
SOX3P41225 TCTA-201ENST00000273590 2146 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.42
SOX3P41225 CDK11A-205ENST00000378633 2458 ntTSL 1 (best) BASIC17.71■□□□□ 0.42
SOX3P41225 CDC42EP2-201ENST00000279249 2023 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 37 ms