Protein–RNA interactions for Protein: P18887

XRCC1, DNA repair protein XRCC1, humanhuman

Predicted RBP Predictions only

Length 633 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
XRCC1P18887 FIP1L1-202ENST00000337488 2198 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
XRCC1P18887 FIP1L1-203ENST00000358575 2180 ntAPPRIS P4 TSL 2 BASIC18.81■□□□□ 0.6
XRCC1P18887 TRABD-203ENST00000395827 2172 ntAPPRIS P3 TSL 5 BASIC18.81■□□□□ 0.6
XRCC1P18887 BANP-223ENST00000538234 2372 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
XRCC1P18887 NR1H2-210ENST00000598168 1915 ntAPPRIS ALT2 TSL 5 BASIC18.81■□□□□ 0.6
XRCC1P18887 EMC6-201ENST00000248378 653 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
XRCC1P18887 PLPP2-201ENST00000269812 1228 ntTSL 3 BASIC18.81■□□□□ 0.6
XRCC1P18887 NDUFS6-201ENST00000274137 1082 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
XRCC1P18887 CAPN10-203ENST00000352879 862 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
XRCC1P18887 DERL1-203ENST00000419562 918 ntTSL 2 BASIC18.81■□□□□ 0.6
XRCC1P18887 AC008040.2-201ENST00000461049 708 ntBASIC18.81■□□□□ 0.6
XRCC1P18887 AC091390.4-202ENST00000476426 537 ntBASIC18.81■□□□□ 0.6
XRCC1P18887 ADGRD1-AS1-202ENST00000542980 1277 ntTSL 4 BASIC18.81■□□□□ 0.6
XRCC1P18887 ZNF205-206ENST00000620094 2309 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
XRCC1P18887 SOCS3-201ENST00000330871 2734 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
XRCC1P18887 RTEL1-204ENST00000370003 2273 ntTSL 2 BASIC18.81■□□□□ 0.6
XRCC1P18887 MZT1-201ENST00000377818 2299 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
XRCC1P18887 SLC16A3-222ENST00000619321 2015 ntAPPRIS P1 TSL 5 BASIC18.81■□□□□ 0.6
XRCC1P18887 DCLK2-207ENST00000635524 2153 ntAPPRIS ALT2 TSL 5 BASIC18.81■□□□□ 0.6
XRCC1P18887 SLC52A2-209ENST00000530047 1757 ntAPPRIS P1 TSL 2 BASIC18.81■□□□□ 0.6
XRCC1P18887 SBNO2-201ENST00000361757 4923 ntAPPRIS P4 TSL 1 (best) BASIC18.81■□□□□ 0.6
XRCC1P18887 GGPS1-206ENST00000488594 1396 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
XRCC1P18887 EIF4ENIF1-202ENST00000344710 3115 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
XRCC1P18887 PAOX-201ENST00000278060 1858 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
XRCC1P18887 PAQR4-202ENST00000318782 2793 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
XRCC1P18887 RAP1GAP-204ENST00000374761 3318 ntTSL 5 BASIC18.8■□□□□ 0.6
XRCC1P18887 BPIFB3-201ENST00000375494 1454 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
XRCC1P18887 ZNF821-221ENST00000611294 1833 ntTSL 3 BASIC18.8■□□□□ 0.6
XRCC1P18887 HOXA9-202ENST00000396345 797 ntTSL 2 BASIC18.8■□□□□ 0.6
XRCC1P18887 AZIN1-AS1-215ENST00000522939 644 ntTSL 2 BASIC18.8■□□□□ 0.6
XRCC1P18887 NAPSB-206ENST00000562112 1266 ntBASIC18.8■□□□□ 0.6
XRCC1P18887 ZNF134-203ENST00000600344 483 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
XRCC1P18887 AC145285.6-201ENST00000604632 637 ntBASIC18.8■□□□□ 0.6
XRCC1P18887 NFKBIL1-201ENST00000376145 1401 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
XRCC1P18887 CPEB2-207ENST00000507071 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
XRCC1P18887 FOXI3-201ENST00000428390 2804 ntAPPRIS P1 TSL 3 BASIC18.8■□□□□ 0.6
XRCC1P18887 HDAC4-201ENST00000345617 8976 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
XRCC1P18887 HDAC4-215ENST00000543185 8990 ntTSL 5 BASIC18.8■□□□□ 0.6
XRCC1P18887 ACBD4-207ENST00000586346 1579 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
XRCC1P18887 CPT2-207ENST00000636867 2643 ntTSL 5 BASIC18.8■□□□□ 0.6
XRCC1P18887 SEPT8-216ENST00000620483 4335 ntTSL 5 BASIC18.8■□□□□ 0.6
XRCC1P18887 SLC16A13-201ENST00000308027 1748 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
XRCC1P18887 ATP6V0A2-201ENST00000330342 6542 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
XRCC1P18887 C2CD2-202ENST00000380486 6345 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
XRCC1P18887 AGAP4-201ENST00000311652 2715 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
XRCC1P18887 IMP3-201ENST00000314852 2028 ntAPPRIS P1 TSL 2 BASIC18.79■□□□□ 0.6
XRCC1P18887 CYP2D8P-201ENST00000433633 1490 ntBASIC18.79■□□□□ 0.6
XRCC1P18887 GMPPA-213ENST00000622191 1473 ntTSL 5 BASIC18.79■□□□□ 0.6
XRCC1P18887 PABPC1L-204ENST00000255136 2129 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
XRCC1P18887 PALM3-201ENST00000340790 2262 ntAPPRIS P2 TSL 5 BASIC18.79■□□□□ 0.6
XRCC1P18887 NRN1-204ENST00000622188 1795 ntTSL 2 BASIC18.79■□□□□ 0.6
XRCC1P18887 SNAPIN-201ENST00000368685 1030 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
XRCC1P18887 CRYGFP-201ENST00000418459 633 ntBASIC18.79■□□□□ 0.6
XRCC1P18887 C20orf166-AS1-202ENST00000436101 761 ntTSL 5 BASIC18.79■□□□□ 0.6
XRCC1P18887 FAM207BP-201ENST00000447172 505 ntBASIC18.79■□□□□ 0.6
XRCC1P18887 TAPBP-236ENST00000456592 817 ntTSL 5 BASIC18.79■□□□□ 0.6
XRCC1P18887 AC003982.1-201ENST00000477404 484 ntTSL 2 BASIC18.79■□□□□ 0.6
XRCC1P18887 PDCD6-206ENST00000507528 1088 ntAPPRIS ALT1 TSL 1 (best) BASIC18.79■□□□□ 0.6
XRCC1P18887 AC090970.2-201ENST00000561318 865 ntTSL 5 BASIC18.79■□□□□ 0.6
XRCC1P18887 SLC39A11-207ENST00000579732 1004 ntTSL 2 BASIC18.79■□□□□ 0.6
XRCC1P18887 CLDND2-203ENST00000601435 575 ntAPPRIS P1 TSL 3 BASIC18.79■□□□□ 0.6
XRCC1P18887 OAZ1-211ENST00000602676 1148 ntAPPRIS P3 TSL 5 BASIC18.79■□□□□ 0.6
XRCC1P18887 AL590627.2-201ENST00000637510 144 ntTSL 5 BASIC18.79■□□□□ 0.6
XRCC1P18887 SPAST-203ENST00000615843 5212 ntAPPRIS P4 TSL 1 (best) BASIC18.79■□□□□ 0.6
XRCC1P18887 SLC25A39-202ENST00000377095 1565 ntAPPRIS ALT1 TSL 1 (best) BASIC18.79■□□□□ 0.6
XRCC1P18887 CXorf49-202ENST00000535490 1715 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
XRCC1P18887 CXorf49B-202ENST00000542739 1715 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
XRCC1P18887 FAM57A-201ENST00000301324 2013 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
XRCC1P18887 NAP1L5-201ENST00000323061 2321 ntAPPRIS P1 BASIC18.79■□□□□ 0.6
XRCC1P18887 AKT1S1-207ENST00000391835 3075 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
XRCC1P18887 ACTR3B-203ENST00000397282 1692 ntTSL 2 BASIC18.79■□□□□ 0.6
XRCC1P18887 PNMA8B-202ENST00000599531 5308 ntAPPRIS P1 BASIC18.79■□□□□ 0.6
XRCC1P18887 KRT8-216ENST00000552551 2126 ntAPPRIS P1 TSL 2 BASIC18.79■□□□□ 0.6
XRCC1P18887 ANKS3-202ENST00000446014 2265 ntTSL 5 BASIC18.79■□□□□ 0.6
XRCC1P18887 SORCS2-203ENST00000507866 6152 ntAPPRIS P2 TSL 1 (best) BASIC18.79■□□□□ 0.6
XRCC1P18887 ADAMTS8-201ENST00000257359 4010 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
XRCC1P18887 FAM222A-202ENST00000538780 3294 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
XRCC1P18887 MAGED2-203ENST00000375053 2066 ntAPPRIS P2 TSL 1 (best) BASIC18.78■□□□□ 0.6
XRCC1P18887 CAMK4-210ENST00000512453 1640 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
XRCC1P18887 RBFOX1-215ENST00000553186 2196 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
XRCC1P18887 PRELID3A-201ENST00000336990 1715 ntAPPRIS P1 TSL 2 BASIC18.78■□□□□ 0.6
XRCC1P18887 FAM187A-202ENST00000412523 1748 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
XRCC1P18887 PRELID3A-202ENST00000440960 1716 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
XRCC1P18887 AC008060.1-201ENST00000401499 1551 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
XRCC1P18887 PPP1R3F-202ENST00000376188 2443 ntTSL 2 BASIC18.78■□□□□ 0.6
XRCC1P18887 AL445686.2-201ENST00000577528 1445 ntTSL 3 BASIC18.78■□□□□ 0.6
XRCC1P18887 PMVK-201ENST00000368467 1280 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
XRCC1P18887 AL731557.1-201ENST00000425264 744 ntTSL 3 BASIC18.78■□□□□ 0.6
XRCC1P18887 AL954642.1-201ENST00000428088 538 ntTSL 3 BASIC18.78■□□□□ 0.6
XRCC1P18887 AL359399.1-201ENST00000557610 462 ntTSL 3 BASIC18.78■□□□□ 0.6
XRCC1P18887 SLC25A1P4-201ENST00000567977 778 ntBASIC18.78■□□□□ 0.6
XRCC1P18887 AC010947.1-201ENST00000623454 693 ntBASIC18.78■□□□□ 0.6
XRCC1P18887 LTBP4-201ENST00000204005 5032 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
XRCC1P18887 ACSF2-201ENST00000300441 2235 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
XRCC1P18887 BAIAP2-204ENST00000428708 2095 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
XRCC1P18887 NCF1-201ENST00000289473 1396 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
XRCC1P18887 AP1AR-202ENST00000309703 2337 ntAPPRIS ALT1 TSL 1 (best) BASIC18.78■□□□□ 0.6
XRCC1P18887 LINC00461-203ENST00000504246 2300 ntTSL 2 BASIC18.78■□□□□ 0.6
XRCC1P18887 CLEC10A-201ENST00000254868 1797 ntAPPRIS P3 TSL 1 (best) BASIC18.78■□□□□ 0.6
XRCC1P18887 TAL1-202ENST00000371884 4642 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 24.7 ms